PDB Chemical Component 5HT

Ideal Model

Chemical Description

Name 5-HYDROXY-THYMIDINE
Formula C10 H16 N2 O6
Formal charge 0
Molecular weight 260.244 g/mol
Component type DNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 34
Chiral atom count 4
Chiral atoms C4' C3' C1' C5
Observed leaving atoms HO5' HO3'
Bond count 35
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-hydroxythymidine
Systematic name (OpenEye OEToolkits) (5R)-5-hydroxy-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-1,3-diazinane-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@@]1(O)CN([C@H]2C[C@H](O)[C@@H](CO)O2)C(=O)NC1=O
SMILES (CACTVS) C[C]1(O)CN([CH]2C[CH](O)[CH](CO)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) C[C@]1(CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)O)O
InChI descriptor InChI=1S/C10H16N2O6/c1-10(17)4-12(9(16)11-8(10)15)7-2-5(14)6(3-13)18-7/h5-7,13-14,17H,2-4H2,1H3,(H,11,15,16)/t5-,6+,7+,10+/m0/s1
InChIKey descriptor MRODUHNLAXSPFV-MPXCPUAZSA-N

Status Information

Last modified 2011-06-04
Created 2000-02-24
Release status REL
Model PDB code 1EHL
Processing site RCSB