PDB Chemical Component 5HG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5HG
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O36 |
P30 |
1.531 |
1.479 |
| P30 |
O32 |
1.525 |
1.610 |
| P30 |
O34 |
1.521 |
1.610 |
| P30 |
C28 |
1.809 |
1.823 |
| O32 |
HO32 |
0.950 |
0.967 |
| O34 |
HO34 |
0.950 |
0.967 |
| C28 |
O26 |
1.433 |
1.430 |
| C28 |
H281 |
1.100 |
1.090 |
| C28 |
H282 |
1.100 |
1.090 |
| O26 |
C24 |
1.428 |
1.429 |
| C24 |
C22 |
1.533 |
1.529 |
| C24 |
H241 |
1.100 |
1.089 |
| C24 |
H242 |
1.100 |
1.090 |
| C22 |
N17 |
1.460 |
1.465 |
| C22 |
H221 |
1.100 |
1.090 |
| C22 |
H222 |
1.100 |
1.090 |
| N17 |
C15 |
1.350 |
1.363 |
| N17 |
C3 |
1.335 |
1.372 |
| C15 |
N13 |
1.365 |
1.301 |
| C15 |
H15 |
1.080 |
1.081 |
| N13 |
C2 |
1.347 |
1.355 |
| C2 |
C3 |
1.479 |
1.405 |
| C2 |
C1 |
1.475 |
1.405 |
| C3 |
N4 |
1.361 |
1.329 |
| N4 |
C5 |
1.345 |
1.316 |
| C5 |
N6 |
1.358 |
1.321 |
| C5 |
H5 |
1.081 |
1.080 |
| N6 |
C1 |
1.364 |
1.328 |
| C1 |
N20 |
1.361 |
1.384 |
| N20 |
H201 |
1.000 |
0.970 |
| N20 |
H202 |
1.000 |
0.971 |
Bond Angles for 5HG
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O36 |
P30 |
O32 |
114.9 |
109.5 |
| O36 |
P30 |
O34 |
113.5 |
109.5 |
| O36 |
P30 |
C28 |
104.8 |
109.5 |
| O32 |
P30 |
O34 |
112.5 |
109.5 |
| O32 |
P30 |
C28 |
106.9 |
109.5 |
| P30 |
O32 |
HO32 |
109.5 |
106.8 |
| O34 |
P30 |
C28 |
102.8 |
109.5 |
| P30 |
O34 |
HO34 |
109.5 |
106.8 |
| P30 |
C28 |
O26 |
106.0 |
109.5 |
| P30 |
C28 |
H281 |
111.4 |
109.5 |
| P30 |
C28 |
H282 |
110.6 |
109.5 |
| O26 |
C28 |
H281 |
111.4 |
109.5 |
| O26 |
C28 |
H282 |
110.6 |
109.4 |
| C28 |
O26 |
C24 |
114.7 |
106.8 |
| H281 |
C28 |
H282 |
106.9 |
109.5 |
| O26 |
C24 |
C22 |
107.8 |
109.5 |
| O26 |
C24 |
H241 |
110.4 |
109.5 |
| O26 |
C24 |
H242 |
110.1 |
109.5 |
| C22 |
C24 |
H241 |
110.4 |
109.5 |
| C22 |
C24 |
H242 |
110.0 |
109.5 |
| C24 |
C22 |
N17 |
110.5 |
109.5 |
| C24 |
C22 |
H221 |
108.9 |
109.5 |
| C24 |
C22 |
H222 |
109.2 |
109.5 |
| H241 |
C24 |
H242 |
108.1 |
109.4 |
| N17 |
C22 |
H221 |
108.9 |
109.5 |
| N17 |
C22 |
H222 |
109.1 |
109.5 |
| C22 |
N17 |
C15 |
124.9 |
126.3 |
| C22 |
N17 |
C3 |
126.5 |
126.3 |
| H221 |
C22 |
H222 |
110.2 |
109.4 |
| C15 |
N17 |
C3 |
108.6 |
107.4 |
| N17 |
C15 |
N13 |
111.5 |
110.0 |
| N17 |
C15 |
H15 |
124.2 |
125.0 |
| N17 |
C3 |
C2 |
106.0 |
106.0 |
| N17 |
C3 |
N4 |
134.8 |
134.9 |
| N13 |
C15 |
H15 |
124.3 |
125.0 |
| C15 |
N13 |
C2 |
106.8 |
109.4 |
| N13 |
C2 |
C3 |
107.2 |
107.1 |
| N13 |
C2 |
C1 |
135.5 |
134.7 |
| C3 |
C2 |
C1 |
117.4 |
118.2 |
| C2 |
C3 |
N4 |
119.3 |
119.1 |
| C2 |
C1 |
N6 |
117.2 |
118.5 |
| C2 |
C1 |
N20 |
120.6 |
120.8 |
| C3 |
N4 |
C5 |
120.6 |
120.6 |
| N4 |
C5 |
N6 |
123.1 |
122.4 |
| N4 |
C5 |
H5 |
118.4 |
118.8 |
| N6 |
C5 |
H5 |
118.5 |
118.8 |
| C5 |
N6 |
C1 |
122.5 |
121.2 |
| N6 |
C1 |
N20 |
122.2 |
120.8 |
| C1 |
N20 |
H201 |
109.5 |
120.0 |
| C1 |
N20 |
H202 |
109.5 |
120.0 |
| H201 |
N20 |
H202 |
109.5 |
120.0 |
Torsion Angles for 5HG
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O32 |
P30 |
O36 |
O34 |
131.5 |
120.0 |
| O32 |
P30 |
O36 |
C28 |
242.9 |
240.0 |
| O36 |
P30 |
O32 |
HO32 |
38.4 |
300.0 |
| O34 |
P30 |
O36 |
C28 |
111.4 |
120.0 |
| O36 |
P30 |
O34 |
HO34 |
231.2 |
180.0 |
| O36 |
P30 |
C28 |
O26 |
186.2 |
60.0 |
| O36 |
P30 |
C28 |
H281 |
64.9 |
300.0 |
| O36 |
P30 |
C28 |
H282 |
306.2 |
180.0 |
| O36 |
P30 |
O32 |
O34 |
228.0 |
240.0 |
| O36 |
P30 |
O32 |
C28 |
115.9 |
120.0 |
| O34 |
P30 |
O32 |
C28 |
247.9 |
240.0 |
| O32 |
P30 |
O34 |
HO34 |
98.4 |
60.0 |
| O32 |
P30 |
C28 |
O26 |
308.7 |
180.0 |
| O32 |
P30 |
C28 |
H281 |
187.4 |
60.0 |
| O32 |
P30 |
C28 |
H282 |
68.7 |
300.0 |
| O36 |
P30 |
O34 |
O32 |
132.7 |
120.0 |
| O36 |
P30 |
O34 |
C28 |
247.4 |
240.0 |
| O32 |
P30 |
O34 |
C28 |
114.7 |
120.0 |
| O34 |
P30 |
O32 |
HO32 |
170.4 |
60.0 |
| O34 |
P30 |
C28 |
O26 |
67.4 |
300.0 |
| O34 |
P30 |
C28 |
H281 |
306.0 |
180.0 |
| O34 |
P30 |
C28 |
H282 |
187.4 |
60.0 |
| O36 |
P30 |
C28 |
O32 |
237.6 |
240.0 |
| O36 |
P30 |
C28 |
O34 |
118.9 |
120.0 |
| O32 |
P30 |
C28 |
O34 |
241.3 |
240.0 |
| C28 |
P30 |
O32 |
HO32 |
282.5 |
180.0 |
| C28 |
P30 |
O34 |
HO34 |
343.8 |
300.0 |
| O26 |
C28 |
P30 |
H281 |
121.3 |
120.0 |
| O26 |
C28 |
P30 |
H282 |
240.0 |
240.0 |
| P30 |
C28 |
O26 |
C24 |
220.4 |
75.0 |
| H281 |
C28 |
P30 |
H282 |
118.7 |
120.0 |
| HO32 |
O32 |
P30 |
O34 |
170.4 |
60.0 |
| HO32 |
O32 |
P30 |
C28 |
282.5 |
180.0 |
| HO34 |
O34 |
P30 |
C28 |
343.8 |
300.0 |
| P30 |
C28 |
O26 |
H281 |
238.7 |
240.0 |
| P30 |
C28 |
O26 |
H282 |
120.0 |
120.0 |
| H281 |
C28 |
O26 |
H282 |
241.3 |
240.0 |
| C28 |
O26 |
C24 |
C22 |
259.2 |
180.0 |
| C28 |
O26 |
C24 |
H241 |
138.5 |
60.0 |
| C28 |
O26 |
C24 |
H242 |
19.2 |
300.0 |
| P30 |
C28 |
H281 |
O26 |
118.1 |
120.0 |
| P30 |
C28 |
H281 |
H282 |
239.1 |
240.0 |
| O26 |
C28 |
H281 |
H282 |
120.9 |
120.0 |
| H281 |
C28 |
O26 |
C24 |
341.7 |
195.0 |
| P30 |
C28 |
H282 |
O26 |
242.8 |
240.0 |
| P30 |
C28 |
H282 |
H281 |
121.4 |
120.0 |
| O26 |
C28 |
H282 |
H281 |
238.6 |
240.0 |
| H282 |
C28 |
O26 |
C24 |
100.4 |
315.0 |
| C24 |
O26 |
C28 |
H281 |
341.7 |
195.0 |
| C24 |
O26 |
C28 |
H282 |
100.4 |
315.0 |
| C22 |
C24 |
O26 |
H241 |
120.7 |
120.1 |
| C22 |
C24 |
O26 |
H242 |
240.0 |
240.0 |
| O26 |
C24 |
C22 |
N17 |
177.4 |
180.0 |
| O26 |
C24 |
C22 |
H221 |
57.8 |
60.0 |
| O26 |
C24 |
C22 |
H222 |
297.4 |
300.0 |
| H241 |
C24 |
O26 |
H242 |
119.3 |
119.9 |
| O26 |
C24 |
C22 |
H241 |
239.3 |
240.0 |
| O26 |
C24 |
C22 |
H242 |
120.0 |
120.0 |
| H241 |
C24 |
C22 |
H242 |
240.7 |
240.0 |
| N17 |
C22 |
C24 |
H221 |
119.6 |
120.0 |
| N17 |
C22 |
C24 |
H222 |
240.0 |
240.0 |
| C24 |
C22 |
N17 |
C15 |
105.5 |
265.0 |
| C24 |
C22 |
N17 |
C3 |
286.5 |
84.9 |
| H221 |
C22 |
C24 |
H222 |
120.4 |
119.9 |
| O26 |
C24 |
H241 |
C22 |
119.1 |
120.1 |
| O26 |
C24 |
H241 |
H242 |
239.5 |
240.1 |
| C22 |
C24 |
H241 |
H242 |
120.4 |
120.0 |
| H241 |
C24 |
C22 |
N17 |
298.1 |
300.0 |
| H241 |
C24 |
C22 |
H221 |
178.5 |
180.0 |
| H241 |
C24 |
C22 |
H222 |
58.1 |
60.0 |
| O26 |
C24 |
H242 |
C22 |
241.4 |
240.0 |
| O26 |
C24 |
H242 |
H241 |
120.7 |
119.9 |
| C22 |
C24 |
H242 |
H241 |
239.3 |
240.0 |
| H242 |
C24 |
C22 |
N17 |
57.4 |
60.0 |
| H242 |
C24 |
C22 |
H221 |
297.8 |
299.9 |
| H242 |
C24 |
C22 |
H222 |
177.4 |
180.0 |
| N17 |
C22 |
C24 |
H241 |
298.1 |
300.0 |
| N17 |
C22 |
C24 |
H242 |
57.4 |
60.0 |
| C24 |
C22 |
N17 |
H221 |
240.4 |
240.0 |
| C24 |
C22 |
N17 |
H222 |
120.0 |
120.0 |
| H221 |
C22 |
N17 |
H222 |
239.6 |
240.1 |
| C15 |
N17 |
C22 |
C3 |
179.1 |
180.1 |
| C22 |
N17 |
C15 |
N13 |
179.9 |
179.9 |
| C22 |
N17 |
C15 |
H15 |
359.9 |
359.9 |
| C22 |
N17 |
C3 |
C2 |
180.0 |
180.3 |
| C22 |
N17 |
C3 |
N4 |
0.3 |
0.1 |
| H221 |
C22 |
C24 |
H241 |
178.5 |
180.0 |
| H221 |
C22 |
C24 |
H242 |
297.8 |
299.9 |
| C24 |
C22 |
H221 |
N17 |
120.5 |
120.1 |
| C24 |
C22 |
H221 |
H222 |
240.2 |
240.0 |
| N17 |
C22 |
H221 |
H222 |
119.7 |
120.0 |
| H221 |
C22 |
N17 |
C15 |
225.2 |
25.1 |
| H221 |
C22 |
N17 |
C3 |
46.1 |
205.0 |
| H222 |
C22 |
C24 |
H241 |
58.1 |
60.0 |
| H222 |
C22 |
C24 |
H242 |
177.4 |
180.0 |
| C24 |
C22 |
H222 |
N17 |
239.2 |
240.0 |
| C24 |
C22 |
H222 |
H221 |
119.6 |
120.0 |
| N17 |
C22 |
H222 |
H221 |
240.4 |
240.0 |
| H222 |
C22 |
N17 |
C15 |
345.5 |
145.0 |
| H222 |
C22 |
N17 |
C3 |
166.5 |
324.9 |
| C15 |
N17 |
C22 |
H221 |
225.2 |
25.1 |
| C15 |
N17 |
C22 |
H222 |
345.5 |
145.0 |
| C22 |
N17 |
C15 |
C3 |
180.8 |
179.9 |
| C15 |
N17 |
C3 |
C2 |
0.8 |
0.2 |
| C15 |
N17 |
C3 |
N4 |
181.1 |
180.1 |
| N13 |
C15 |
N17 |
H15 |
180.0 |
180.0 |
| N17 |
C15 |
N13 |
C2 |
0.6 |
359.8 |
| C3 |
N17 |
C22 |
H221 |
46.1 |
205.0 |
| C3 |
N17 |
C22 |
H222 |
166.5 |
324.9 |
| C22 |
N17 |
C3 |
C15 |
179.2 |
180.1 |
| C3 |
N17 |
C15 |
N13 |
359.1 |
0.0 |
| C3 |
N17 |
C15 |
H15 |
179.1 |
180.0 |
| N13 |
C2 |
C3 |
N17 |
359.5 |
359.7 |
| N17 |
C3 |
C2 |
C1 |
179.7 |
180.4 |
| C2 |
C3 |
N17 |
N4 |
179.7 |
180.1 |
| N17 |
C3 |
N4 |
C5 |
180.2 |
180.0 |
| N13 |
C15 |
N17 |
C3 |
359.1 |
0.0 |
| N17 |
C15 |
N13 |
H15 |
180.0 |
180.0 |
| C15 |
N13 |
C2 |
C3 |
360.0 |
0.3 |
| C15 |
N13 |
C2 |
C1 |
179.7 |
179.5 |
| H15 |
C15 |
N17 |
C3 |
179.1 |
180.0 |
| N17 |
C15 |
H15 |
N13 |
180.0 |
180.0 |
| H15 |
C15 |
N13 |
C2 |
180.6 |
179.8 |
| N17 |
C3 |
C2 |
N13 |
359.5 |
359.7 |
| C2 |
N13 |
C15 |
H15 |
180.6 |
179.8 |
| C3 |
C2 |
N13 |
C1 |
180.2 |
180.9 |
| N13 |
C2 |
C3 |
N4 |
179.3 |
179.8 |
| N13 |
C2 |
C1 |
N6 |
180.7 |
180.4 |
| N13 |
C2 |
C1 |
N20 |
360.0 |
0.7 |
| N17 |
C3 |
C2 |
N4 |
180.2 |
179.9 |
| N13 |
C2 |
C3 |
C1 |
179.8 |
179.3 |
| C3 |
C2 |
C1 |
N6 |
0.4 |
359.5 |
| C3 |
C2 |
C1 |
N20 |
179.7 |
179.7 |
| C2 |
C3 |
N4 |
C5 |
0.5 |
359.8 |
| N13 |
C2 |
C1 |
C3 |
180.3 |
180.9 |
| C1 |
C2 |
C3 |
N4 |
359.5 |
0.5 |
| C5 |
N6 |
C1 |
C2 |
359.8 |
0.3 |
| N6 |
C1 |
C2 |
N20 |
180.7 |
179.8 |
| C2 |
C1 |
N20 |
H201 |
205.3 |
179.7 |
| C2 |
C1 |
N20 |
H202 |
85.3 |
359.5 |
| N17 |
C3 |
N4 |
C2 |
179.7 |
180.2 |
| N4 |
C3 |
C2 |
C1 |
359.5 |
0.5 |
| C3 |
N4 |
C5 |
N6 |
359.7 |
359.9 |
| C3 |
N4 |
C5 |
H5 |
179.7 |
180.0 |
| N6 |
C5 |
N4 |
H5 |
180.0 |
179.9 |
| N4 |
C5 |
N6 |
C1 |
0.2 |
0.1 |
| C2 |
C1 |
N6 |
C5 |
359.8 |
0.3 |
| N4 |
C5 |
N6 |
H5 |
180.0 |
180.1 |
| C5 |
N6 |
C1 |
N20 |
180.5 |
180.0 |
| N4 |
C5 |
H5 |
N6 |
180.0 |
179.9 |
| H5 |
C5 |
N6 |
C1 |
180.2 |
179.9 |
| C2 |
C1 |
N6 |
N20 |
179.3 |
180.2 |
| C1 |
N6 |
C5 |
H5 |
180.2 |
179.9 |
| N6 |
C1 |
N20 |
H201 |
24.6 |
359.9 |
| N6 |
C1 |
N20 |
H202 |
264.5 |
179.8 |
| C2 |
C1 |
N20 |
N6 |
180.8 |
179.8 |
| H201 |
N20 |
C1 |
H202 |
120.0 |
180.1 |
| C1 |
N20 |
H201 |
H202 |
239.9 |
179.9 |
| C1 |
N20 |
H202 |
H201 |
120.0 |
180.1 |