PDB Chemical Component 5HE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5HE

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.513 1.530
C2 C3 1.511 1.508
C3 C4 1.330 1.310
C4 C5 1.510 1.507
C5 C6 1.510 1.507
C6 C7 1.329 1.310
C7 C8 1.510 1.507
C8 C9 1.510 1.507
C9 C10 1.330 1.310
C10 C11 1.510 1.507
C11 C13 1.510 1.508
C13 C14 1.331 1.329
C14 C16 1.460 1.472
C16 C17 1.330 1.329
C17 C18 1.511 1.507
C18 C19 1.524 1.530
C18 O3 1.431 1.429
C19 C20 1.524 1.530
C20 C21 1.524 1.530
C21 C22 1.511 1.507
C22 O23 1.250 1.342
C22 O24 1.250 1.208
C1 H1C1 1.100 1.090
C1 H1C2 1.100 1.090
C1 H1C3 1.100 1.090
C2 H2C1 1.100 1.091
C2 H2C2 1.100 1.089
C3 H3 1.080 1.080
C4 H4 1.080 1.080
C5 H5C1 1.100 1.090
C5 H5C2 1.100 1.090
C6 H6 1.080 1.080
C7 H7 1.080 1.080
C8 H8C1 1.100 1.090
C8 H8C2 1.100 1.090
C9 H9 1.080 1.080
C10 H10 1.080 1.080
C11 H111 1.100 1.090
C11 H112 1.100 1.090
C13 H13 1.080 1.079
C14 H14 1.080 1.080
C16 H16 1.080 1.079
C17 H17 1.080 1.080
C18 H18 1.100 1.090
C19 H191 1.100 1.090
C19 H192 1.100 1.090
O3 HA 0.950 0.966
C20 H201 1.100 1.091
C20 H202 1.100 1.090
C21 H211 1.100 1.090
C21 H212 1.100 1.090
O23 H23 0.950 0.967

Bond Angles for 5HE

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 C2 C3 109.5 109.5
C2 C1 H1C1 109.5 109.5
C2 C1 H1C2 109.4 109.5
C2 C1 H1C3 109.4 109.5
C1 C2 H2C1 109.4 109.5
C1 C2 H2C2 109.5 109.5
C2 C3 C4 120.0 120.0
C3 C2 H2C1 109.5 109.4
C3 C2 H2C2 109.5 109.4
C2 C3 H3 120.0 120.0
C3 C4 C5 120.0 120.0
C4 C3 H3 120.0 120.0
C3 C4 H4 120.0 120.0
C4 C5 C6 109.5 109.5
C5 C4 H4 120.0 120.0
C4 C5 H5C1 109.5 109.5
C4 C5 H5C2 109.4 109.4
C5 C6 C7 120.0 120.0
C6 C5 H5C1 109.5 109.5
C6 C5 H5C2 109.5 109.5
C5 C6 H6 120.0 120.0
C6 C7 C8 120.0 120.0
C7 C6 H6 120.0 120.1
C6 C7 H7 120.0 119.9
C7 C8 C9 109.5 109.4
C8 C7 H7 120.0 120.0
C7 C8 H8C1 109.4 109.5
C7 C8 H8C2 109.4 109.4
C8 C9 C10 120.0 120.0
C9 C8 H8C1 109.5 109.5
C9 C8 H8C2 109.5 109.5
C8 C9 H9 120.0 120.0
C9 C10 C11 120.0 120.0
C10 C9 H9 120.0 120.0
C9 C10 H10 120.0 120.0
C10 C11 C13 109.4 109.5
C11 C10 H10 120.0 120.0
C10 C11 H111 109.5 109.5
C10 C11 H112 109.5 109.5
C11 C13 C14 120.0 120.0
C13 C11 H111 109.5 109.4
C13 C11 H112 109.5 109.5
C11 C13 H13 120.0 120.0
C13 C14 C16 120.0 120.0
C14 C13 H13 120.0 120.0
C13 C14 H14 120.0 120.0
C14 C16 C17 120.0 120.0
C16 C14 H14 120.0 120.0
C14 C16 H16 120.0 120.0
C16 C17 C18 120.0 120.0
C17 C16 H16 120.0 120.0
C16 C17 H17 120.0 120.0
C17 C18 C19 109.5 109.4
C17 C18 O3 109.5 109.4
C18 C17 H17 120.0 120.0
C17 C18 H18 109.5 109.5
C19 C18 O3 109.5 109.5
C18 C19 C20 111.0 109.4
C19 C18 H18 109.5 109.5
C18 C19 H191 109.0 109.5
C18 C19 H192 108.6 109.5
O3 C18 H18 109.5 109.5
C18 O3 HA 109.5 114.0
C19 C20 C21 111.0 109.5
C20 C19 H191 109.0 109.5
C20 C19 H192 108.7 109.5
C19 C20 H201 109.0 109.4
C19 C20 H202 108.6 109.5
C20 C21 C22 109.5 109.5
C21 C20 H201 109.0 109.5
C21 C20 H202 108.6 109.5
C20 C21 H211 109.5 109.5
C20 C21 H212 109.5 109.5
C21 C22 O23 118.5 120.0
C21 C22 O24 118.5 120.0
C22 C21 H211 109.5 109.5
C22 C21 H212 109.5 109.4
O23 C22 O24 123.0 120.0
C22 O23 H23 109.5 117.0
H1C1 C1 H1C2 109.4 109.4
H1C1 C1 H1C3 109.4 109.4
H1C2 C1 H1C3 109.5 109.5
H2C1 C2 H2C2 109.5 109.5
H5C1 C5 H5C2 109.5 109.5
H8C1 C8 H8C2 109.5 109.5
H111 C11 H112 109.4 109.5
H191 C19 H192 110.6 109.5
H201 C20 H202 110.7 109.5
H211 C21 H212 109.4 109.5

Torsion Angles for 5HE

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1 C2 C3 C4 164.4 127.6
C3 C2 C1 H2C1 240.0 240.0
C3 C2 C1 H2C2 120.0 120.0
C1 C2 C3 H3 344.4 307.6
H1C1 C1 C2 H1C2 240.0 240.0
H1C1 C1 C2 H1C3 120.0 120.0
H1C2 C1 C2 H1C3 240.0 240.0
H2C1 C2 C1 H2C2 240.0 239.9
C3 C2 C1 H1C1 272.1 300.0
C3 C2 C1 H1C2 32.1 60.0
C3 C2 C1 H1C3 152.2 180.0
C1 C2 C3 H2C1 120.0 120.0
C1 C2 C3 H2C2 240.0 240.0
C2 C3 C4 C5 0.0 7.0
C4 C3 C2 H3 180.0 180.0
C2 C3 C4 H4 180.0 187.0
H2C1 C2 C3 H2C2 120.0 120.0
C4 C3 C2 H2C1 44.4 7.6
C4 C3 C2 H2C2 284.4 247.6
C2 C3 C4 H3 180.0 180.0
C3 C4 C5 C6 131.3 126.5
C5 C4 C3 H4 180.0 180.0
C3 C4 C5 H5C1 251.4 246.5
C3 C4 C5 H5C2 11.3 6.5
C5 C4 C3 H3 180.0 187.0
C3 C4 C5 H4 180.0 180.0
C4 C5 C6 C7 172.2 127.6
C6 C5 C4 H5C1 240.0 240.0
C6 C5 C4 H5C2 120.0 120.0
C4 C5 C6 H6 352.2 307.6
H5C1 C5 C4 H5C2 240.0 240.0
C6 C5 C4 H4 311.3 306.5
C4 C5 C6 H5C1 120.0 120.0
C4 C5 C6 H5C2 240.0 240.0
C5 C6 C7 C8 0.0 7.0
C7 C6 C5 H6 180.0 180.0
C5 C6 C7 H7 180.0 187.0
H5C1 C5 C6 H5C2 120.0 120.0
C7 C6 C5 H5C1 52.2 7.6
C7 C6 C5 H5C2 292.2 247.6
C5 C6 C7 H6 180.0 180.0
C6 C7 C8 C9 159.9 126.5
C8 C7 C6 H7 180.0 180.0
C6 C7 C8 H8C1 279.9 246.5
C6 C7 C8 H8C2 39.9 6.5
C8 C7 C6 H6 180.0 187.0
C6 C7 C8 H7 180.0 180.0
C7 C8 C9 C10 144.4 127.0
C9 C8 C7 H8C1 240.0 240.0
C9 C8 C7 H8C2 120.0 120.0
C7 C8 C9 H9 324.4 307.0
H8C1 C8 C7 H8C2 240.0 240.0
C9 C8 C7 H7 339.9 306.5
C7 C8 C9 H8C1 120.0 120.0
C7 C8 C9 H8C2 240.0 240.1
C8 C9 C10 C11 0.0 7.7
C10 C9 C8 H9 180.0 180.0
C8 C9 C10 H10 180.0 187.7
H8C1 C8 C9 H8C2 120.0 120.1
C10 C9 C8 H8C1 24.4 7.0
C10 C9 C8 H8C2 264.3 247.0
C8 C9 C10 H9 180.0 180.0
C9 C10 C11 C13 113.4 127.0
C11 C10 C9 H10 180.0 180.0
C9 C10 C11 H111 233.3 247.0
C9 C10 C11 H112 353.3 7.0
C11 C10 C9 H9 180.0 187.7
C9 C10 C11 H10 180.0 180.0
C10 C11 C13 C14 159.1 125.3
C13 C11 C10 H111 240.0 240.0
C13 C11 C10 H112 120.0 120.0
C10 C11 C13 H13 339.1 305.3
H111 C11 C10 H112 240.0 240.0
C13 C11 C10 H10 293.3 307.0
C10 C11 C13 H111 120.0 120.0
C10 C11 C13 H112 240.0 240.0
C11 C13 C14 C16 360.0 6.7
C14 C13 C11 H13 180.0 180.0
C11 C13 C14 H14 180.0 186.7
H111 C11 C13 H112 120.0 120.0
C14 C13 C11 H111 39.1 5.3
C14 C13 C11 H112 279.1 245.3
C11 C13 C14 H13 180.0 180.0
C13 C14 C16 C17 321.7 175.6
C16 C14 C13 H14 180.0 180.0
C13 C14 C16 H16 141.8 355.6
C16 C14 C13 H13 180.0 186.7
C13 C14 C16 H14 180.0 180.0
C14 C16 C17 C18 180.0 180.0
C17 C16 C14 H16 180.0 180.0
C14 C16 C17 H17 0.0 0.0
C17 C16 C14 H14 141.7 355.6
C14 C16 C17 H16 180.0 180.0
C16 C17 C18 C19 5.8 120.0
C16 C17 C18 O3 125.8 240.0
C18 C17 C16 H17 180.0 180.0
C16 C17 C18 H18 245.8 360.0
C18 C17 C16 H16 360.0 0.0
C16 C17 C18 H17 180.0 180.0
C19 C18 C17 O3 240.0 240.0
C17 C18 C19 C20 210.9 185.0
C19 C18 C17 H18 120.0 120.0
C17 C18 C19 H191 330.9 305.0
C17 C18 C19 H192 91.5 65.0
O3 C18 C17 H18 240.0 240.0
C17 C18 O3 HA 51.8 300.0
C17 C18 C19 O3 120.0 119.9
C19 C18 C17 H17 185.8 300.0
C17 C18 C19 H18 240.0 240.0
O3 C18 C19 H18 120.0 120.0
C19 C18 O3 HA 171.8 60.0
C18 C19 C20 C21 177.7 180.0
C20 C19 C18 H191 240.0 240.0
C20 C19 C18 H192 119.4 120.0
C18 C19 C20 H201 297.7 300.0
C18 C19 C20 H202 58.4 60.0
H191 C19 C18 H192 239.4 240.0
C17 C18 O3 C19 240.0 240.1
O3 C18 C17 H17 305.8 60.0
C17 C18 O3 H18 120.0 120.0
O3 C18 C19 C20 90.9 65.0
C19 C18 O3 H18 240.0 240.0
O3 C18 C19 H191 210.9 185.0
O3 C18 C19 H192 331.5 305.1
C20 C19 C18 O3 90.9 65.0
C20 C19 C18 H18 330.9 305.0
C18 C19 C20 H191 120.0 120.0
C18 C19 C20 H192 240.6 240.0
C19 C20 C21 C22 78.5 180.0
C21 C20 C19 H201 240.0 240.0
C21 C20 C19 H202 119.3 120.0
C19 C20 C21 H211 198.6 300.0
C19 C20 C21 H212 318.5 60.0
H191 C19 C20 H192 120.6 120.0
H201 C20 C19 H202 239.4 240.0
C21 C20 C19 H191 57.7 60.0
C21 C20 C19 H192 297.1 300.0
C19 C20 C21 H201 120.0 120.0
C19 C20 C21 H202 240.6 240.0
C20 C21 C22 O23 297.0 180.0
C20 C21 C22 O24 116.9 360.0
C22 C21 C20 H211 240.0 240.0
C22 C21 C20 H212 120.0 120.0
H201 C20 C21 H202 120.6 120.0
H211 C21 C20 H212 240.0 240.0
C22 C21 C20 H201 318.5 60.0
C22 C21 C20 H202 197.9 300.0
C20 C21 C22 H211 120.0 120.0
C20 C21 C22 H212 240.0 240.0
O23 C22 C21 O24 180.1 180.0
C21 C22 O23 H23 180.0 180.0
H211 C21 C22 H212 120.0 120.0
C21 C22 O23 O24 179.9 180.0
O23 C22 C21 H211 177.0 60.0
O23 C22 C21 H212 57.0 300.0
C21 C22 O24 O23 180.1 180.0
O24 C22 C21 H211 356.9 240.0
O24 C22 C21 H212 237.0 120.0
O24 C22 O23 H23 0.0 0.0
H1C1 C1 C2 C3 272.1 300.0
C2 C1 H1C1 H1C2 120.0 120.0
C2 C1 H1C1 H1C3 240.0 240.0
H1C1 C1 C2 H2C1 32.1 59.9
H1C1 C1 C2 H2C2 152.2 180.0
H1C2 C1 H1C1 H1C3 120.1 119.9
H1C2 C1 C2 C3 32.1 60.0
C2 C1 H1C2 H1C1 240.0 240.0
C2 C1 H1C2 H1C3 120.0 120.1
H1C2 C1 C2 H2C1 152.1 179.9
H1C2 C1 C2 H2C2 272.1 300.0
H1C1 C1 H1C2 H1C3 240.0 240.1
H1C3 C1 C2 C3 152.2 180.0
C2 C1 H1C3 H1C1 120.0 120.0
C2 C1 H1C3 H1C2 240.0 239.9
H1C3 C1 C2 H2C1 272.2 300.0
H1C3 C1 C2 H2C2 32.2 60.0
H1C1 C1 H1C3 H1C2 120.0 119.9
C1 C2 H2C1 C3 240.0 240.0
H2C1 C2 C1 H1C1 32.1 59.9
H2C1 C2 C1 H1C2 152.1 179.9
H2C1 C2 C1 H1C3 272.2 300.0
C1 C2 H2C1 H2C2 120.0 120.0
H2C1 C2 C3 C4 44.4 7.6
C3 C2 H2C1 H2C2 240.0 240.0
H2C1 C2 C3 H3 224.4 187.6
C1 C2 H2C2 C3 120.0 120.0
H2C2 C2 C1 H1C1 152.2 180.0
H2C2 C2 C1 H1C2 272.1 300.0
H2C2 C2 C1 H1C3 32.2 60.0
C1 C2 H2C2 H2C1 240.0 240.0
H2C2 C2 C3 C4 284.4 247.6
C3 C2 H2C2 H2C1 120.0 120.0
H2C2 C2 C3 H3 104.4 67.6
C2 C3 H3 C4 180.0 180.0
H3 C3 C2 H2C1 224.4 187.6
H3 C3 C2 H2C2 104.4 67.6
H3 C3 C4 C5 180.0 187.0
H3 C3 C4 H4 0.1 7.1
C3 C4 H4 C5 180.0 180.0
H4 C4 C3 H3 0.1 7.1
H4 C4 C5 C6 311.3 306.5
H4 C4 C5 H5C1 71.3 66.5
H4 C4 C5 H5C2 191.3 186.5
C4 C5 H5C1 C6 240.0 240.0
H5C1 C5 C4 H4 71.3 66.5
C4 C5 H5C1 H5C2 119.9 120.0
H5C1 C5 C6 C7 52.2 7.6
C6 C5 H5C1 H5C2 240.0 240.0
H5C1 C5 C6 H6 232.2 187.6
C4 C5 H5C2 C6 120.0 120.0
H5C2 C5 C4 H4 191.3 186.5
C4 C5 H5C2 H5C1 240.0 240.0
H5C2 C5 C6 C7 292.2 247.6
C6 C5 H5C2 H5C1 120.0 120.0
H5C2 C5 C6 H6 112.2 67.6
C5 C6 H6 C7 180.0 180.0
H6 C6 C5 H5C1 232.2 187.6
H6 C6 C5 H5C2 112.2 67.6
H6 C6 C7 C8 180.0 187.0
H6 C6 C7 H7 0.0 7.0
C6 C7 H7 C8 180.0 180.0
H7 C7 C6 H6 0.0 7.0
H7 C7 C8 C9 339.9 306.5
H7 C7 C8 H8C1 99.9 66.5
H7 C7 C8 H8C2 219.9 186.5
C7 C8 H8C1 C9 240.0 240.0
H8C1 C8 C7 H7 99.9 66.5
C7 C8 H8C1 H8C2 119.9 120.0
H8C1 C8 C9 C10 24.4 7.0
C9 C8 H8C1 H8C2 240.0 239.9
H8C1 C8 C9 H9 204.4 187.0
C7 C8 H8C2 C9 120.0 119.9
H8C2 C8 C7 H7 219.9 186.5
C7 C8 H8C2 H8C1 240.1 240.0
H8C2 C8 C9 C10 264.3 247.0
C9 C8 H8C2 H8C1 120.0 120.1
H8C2 C8 C9 H9 84.4 66.9
C8 C9 H9 C10 180.0 180.0
H9 C9 C8 H8C1 204.4 187.0
H9 C9 C8 H8C2 84.4 66.9
H9 C9 C10 C11 180.0 187.7
H9 C9 C10 H10 0.0 7.7
C9 C10 H10 C11 180.0 180.0
H10 C10 C9 H9 0.0 7.7
H10 C10 C11 C13 293.3 307.0
H10 C10 C11 H111 53.3 67.0
H10 C10 C11 H112 173.3 187.0
C10 C11 H111 C13 240.0 240.0
H111 C11 C10 H10 53.3 67.0
C10 C11 H111 H112 120.0 120.0
H111 C11 C13 C14 39.1 5.3
C13 C11 H111 H112 240.0 240.0
H111 C11 C13 H13 219.0 185.3
C10 C11 H112 C13 120.0 120.0
H112 C11 C10 H10 173.3 187.0
C10 C11 H112 H111 240.0 239.9
H112 C11 C13 C14 279.1 245.3
C13 C11 H112 H111 120.0 119.9
H112 C11 C13 H13 99.1 65.3
C11 C13 H13 C14 180.0 180.0
H13 C13 C11 H111 219.0 185.3
H13 C13 C11 H112 99.1 65.3
H13 C13 C14 C16 180.0 186.7
H13 C13 C14 H14 0.0 6.7
C13 C14 H14 C16 180.0 180.0
H14 C14 C13 H13 0.0 6.7
H14 C14 C16 C17 141.7 355.6
H14 C14 C16 H16 321.7 175.5
C14 C16 H16 C17 180.0 180.0
H16 C16 C14 H14 321.7 175.5
H16 C16 C17 C18 360.0 0.0
H16 C16 C17 H17 180.0 180.0
C16 C17 H17 C18 180.0 180.0
H17 C17 C16 H16 180.0 180.0
H17 C17 C18 C19 185.8 300.0
H17 C17 C18 O3 305.8 60.0
H17 C17 C18 H18 65.8 180.0
C17 C18 H18 C19 120.0 120.0
C17 C18 H18 O3 240.0 240.0
H18 C18 C17 H17 65.8 180.0
C19 C18 H18 O3 120.0 120.0
H18 C18 C19 C20 330.9 305.0
H18 C18 C19 H191 90.9 65.0
H18 C18 C19 H192 211.5 185.0
H18 C18 O3 HA 291.8 180.0
H191 C19 C18 O3 210.9 185.0
C18 C19 H191 C20 238.8 240.0
H191 C19 C18 H18 90.9 65.0
C18 C19 H191 H192 119.4 120.1
H191 C19 C20 C21 57.7 60.0
C20 C19 H191 H192 240.6 240.0
H191 C19 C20 H201 177.7 180.0
H191 C19 C20 H202 298.4 300.0
H192 C19 C18 O3 331.5 305.1
C18 C19 H192 C20 120.8 120.0
H192 C19 C18 H18 211.5 185.0
C18 C19 H192 H191 240.4 240.0
H192 C19 C20 C21 297.1 300.0
C20 C19 H192 H191 119.6 120.0
H192 C19 C20 H201 57.1 60.0
H192 C19 C20 H202 177.7 180.0
HA O3 C18 H18 291.8 180.0
C19 C20 H201 C21 238.8 240.0
H201 C20 C19 H191 177.7 180.0
H201 C20 C19 H192 57.1 60.0
C19 C20 H201 H202 119.4 120.0
H201 C20 C21 C22 318.5 60.0
C21 C20 H201 H202 240.6 240.0
H201 C20 C21 H211 78.6 180.0
H201 C20 C21 H212 198.5 300.0
C19 C20 H202 C21 120.8 120.0
H202 C20 C19 H191 298.4 300.0
H202 C20 C19 H192 177.7 180.0
C19 C20 H202 H201 240.4 240.1
H202 C20 C21 C22 197.9 300.0
C21 C20 H202 H201 119.6 120.0
H202 C20 C21 H211 317.9 60.0
H202 C20 C21 H212 77.9 180.0
C20 C21 H211 C22 240.0 240.0
H211 C21 C20 H201 78.6 180.0
H211 C21 C20 H202 317.9 60.0
C20 C21 H211 H212 120.0 120.0
H211 C21 C22 O23 177.0 60.0
H211 C21 C22 O24 356.9 240.0
C22 C21 H211 H212 240.0 240.0
C20 C21 H212 C22 120.0 120.0
H212 C21 C20 H201 198.5 300.0
H212 C21 C20 H202 77.9 180.0
C20 C21 H212 H211 240.0 240.0
H212 C21 C22 O23 57.0 300.0
H212 C21 C22 O24 237.0 120.0
C22 C21 H212 H211 120.0 120.0
H23 O23 C22 O24 0.0 0.0