PDB Chemical Component 5H
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5H
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
S19 |
O20 |
1.443 |
1.421 |
S19 |
O21 |
1.435 |
1.421 |
S19 |
N22 |
1.745 |
1.656 |
S19 |
C24 |
1.782 |
1.762 |
N22 |
N1 |
1.478 |
1.401 |
N22 |
H22 |
1.000 |
0.970 |
C24 |
C25 |
1.411 |
1.382 |
C24 |
C30 |
1.415 |
1.382 |
C25 |
C26 |
1.405 |
1.383 |
C25 |
H25 |
1.080 |
1.080 |
C26 |
C27 |
1.410 |
1.382 |
C26 |
H26 |
1.080 |
1.079 |
C27 |
C29 |
1.410 |
1.383 |
C27 |
H27 |
1.080 |
1.079 |
C29 |
C30 |
1.407 |
1.382 |
C29 |
H29 |
1.080 |
1.080 |
C30 |
H30 |
1.080 |
1.080 |
C1 |
C2 |
1.525 |
1.507 |
C1 |
C14 |
1.551 |
1.530 |
C1 |
H11 |
1.100 |
1.090 |
C1 |
H12 |
1.100 |
1.089 |
C2 |
C4 |
1.409 |
1.383 |
C2 |
C3 |
1.406 |
1.383 |
C4 |
C5 |
1.403 |
1.382 |
C4 |
H4 |
1.080 |
1.080 |
C5 |
C8 |
1.412 |
1.383 |
C5 |
H5 |
1.080 |
1.081 |
C6 |
C8 |
1.409 |
1.383 |
C6 |
C3 |
1.402 |
1.383 |
C6 |
H6 |
1.080 |
1.080 |
C8 |
BR1 |
1.884 |
1.891 |
N1 |
C9 |
1.336 |
1.346 |
N1 |
C7 |
1.334 |
1.323 |
C9 |
S1 |
1.766 |
1.786 |
C9 |
S2 |
1.681 |
1.712 |
C14 |
C7 |
1.525 |
1.522 |
C14 |
S1 |
1.770 |
1.837 |
C14 |
H14 |
1.100 |
1.090 |
C7 |
O1 |
1.240 |
1.212 |
C3 |
H3 |
1.080 |
1.080 |
Bond Angles for 5H
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O20 |
S19 |
O21 |
120.1 |
125.4 |
O20 |
S19 |
N22 |
105.4 |
105.8 |
O20 |
S19 |
C24 |
109.3 |
105.8 |
O21 |
S19 |
N22 |
104.6 |
105.8 |
O21 |
S19 |
C24 |
109.8 |
105.8 |
N22 |
S19 |
C24 |
106.7 |
107.4 |
S19 |
N22 |
N1 |
115.6 |
120.0 |
S19 |
N22 |
H22 |
107.5 |
120.0 |
S19 |
C24 |
C25 |
120.0 |
120.0 |
S19 |
C24 |
C30 |
119.9 |
120.0 |
N1 |
N22 |
H22 |
107.5 |
120.0 |
N22 |
N1 |
C9 |
119.5 |
118.4 |
N22 |
N1 |
C7 |
126.6 |
118.3 |
C25 |
C24 |
C30 |
120.1 |
120.0 |
C24 |
C25 |
C26 |
120.0 |
120.0 |
C24 |
C25 |
H25 |
120.0 |
120.0 |
C24 |
C30 |
C29 |
120.0 |
120.1 |
C24 |
C30 |
H30 |
120.0 |
119.9 |
C26 |
C25 |
H25 |
120.0 |
120.0 |
C25 |
C26 |
C27 |
119.8 |
120.0 |
C25 |
C26 |
H26 |
120.1 |
120.0 |
C27 |
C26 |
H26 |
120.1 |
120.0 |
C26 |
C27 |
C29 |
120.6 |
120.0 |
C26 |
C27 |
H27 |
119.7 |
120.0 |
C29 |
C27 |
H27 |
119.7 |
120.0 |
C27 |
C29 |
C30 |
119.6 |
120.0 |
C27 |
C29 |
H29 |
120.2 |
120.0 |
C30 |
C29 |
H29 |
120.2 |
120.0 |
C29 |
C30 |
H30 |
120.0 |
120.0 |
C2 |
C1 |
C14 |
112.8 |
109.4 |
C2 |
C1 |
H11 |
107.7 |
109.5 |
C2 |
C1 |
H12 |
108.4 |
109.5 |
C1 |
C2 |
C4 |
120.2 |
120.0 |
C1 |
C2 |
C3 |
119.2 |
120.0 |
C14 |
C1 |
H11 |
107.7 |
109.5 |
C14 |
C1 |
H12 |
108.4 |
109.5 |
C1 |
C14 |
C7 |
111.9 |
111.3 |
C1 |
C14 |
S1 |
113.7 |
111.3 |
C1 |
C14 |
H14 |
102.9 |
111.2 |
H11 |
C1 |
H12 |
112.0 |
109.5 |
C4 |
C2 |
C3 |
120.7 |
120.0 |
C2 |
C4 |
C5 |
119.6 |
120.0 |
C2 |
C4 |
H4 |
120.2 |
120.0 |
C2 |
C3 |
C6 |
119.7 |
120.0 |
C2 |
C3 |
H3 |
120.1 |
120.0 |
C5 |
C4 |
H4 |
120.2 |
120.0 |
C4 |
C5 |
C8 |
119.8 |
120.0 |
C4 |
C5 |
H5 |
120.1 |
120.0 |
C8 |
C5 |
H5 |
120.1 |
120.0 |
C5 |
C8 |
C6 |
120.3 |
120.0 |
C5 |
C8 |
BR1 |
120.2 |
120.0 |
C8 |
C6 |
C3 |
119.9 |
120.0 |
C8 |
C6 |
H6 |
120.0 |
120.1 |
C6 |
C8 |
BR1 |
119.5 |
120.0 |
C3 |
C6 |
H6 |
120.1 |
119.9 |
C6 |
C3 |
H3 |
120.1 |
120.0 |
C9 |
N1 |
C7 |
113.8 |
123.3 |
N1 |
C9 |
S1 |
111.5 |
103.9 |
N1 |
C9 |
S2 |
127.3 |
128.1 |
N1 |
C7 |
C14 |
115.9 |
115.4 |
N1 |
C7 |
O1 |
121.3 |
122.3 |
S1 |
C9 |
S2 |
121.1 |
128.1 |
C9 |
S1 |
C14 |
92.0 |
97.6 |
C7 |
C14 |
S1 |
102.4 |
99.9 |
C7 |
C14 |
H14 |
114.0 |
111.3 |
C14 |
C7 |
O1 |
122.8 |
122.3 |
S1 |
C14 |
H14 |
112.4 |
111.3 |
Torsion Angles for 5H
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O21 |
S19 |
O20 |
N22 |
242.5 |
236.9 |
O21 |
S19 |
O20 |
C24 |
128.1 |
123.1 |
N22 |
S19 |
O20 |
C24 |
245.6 |
246.3 |
O20 |
S19 |
N22 |
N1 |
214.0 |
172.6 |
O20 |
S19 |
N22 |
H22 |
334.0 |
352.5 |
O20 |
S19 |
C24 |
C25 |
154.6 |
157.1 |
O20 |
S19 |
C24 |
C30 |
334.5 |
337.4 |
O20 |
S19 |
O21 |
N22 |
117.9 |
123.1 |
O20 |
S19 |
O21 |
C24 |
232.1 |
236.9 |
N22 |
S19 |
O21 |
C24 |
114.2 |
113.7 |
O21 |
S19 |
N22 |
N1 |
341.4 |
307.4 |
O21 |
S19 |
N22 |
H22 |
101.5 |
127.4 |
O21 |
S19 |
C24 |
C25 |
21.0 |
22.3 |
O21 |
S19 |
C24 |
C30 |
200.8 |
202.6 |
O20 |
S19 |
N22 |
O21 |
232.5 |
225.2 |
O20 |
S19 |
N22 |
C24 |
116.1 |
112.6 |
O21 |
S19 |
N22 |
C24 |
243.6 |
247.4 |
N22 |
S19 |
C24 |
C25 |
268.1 |
269.7 |
N22 |
S19 |
C24 |
C30 |
88.0 |
90.0 |
N1 |
N22 |
S19 |
H22 |
240.0 |
180.0 |
S19 |
N22 |
N1 |
C9 |
93.2 |
90.0 |
S19 |
N22 |
N1 |
C7 |
268.4 |
270.0 |
O20 |
S19 |
C24 |
O21 |
133.6 |
134.8 |
O20 |
S19 |
C24 |
N22 |
246.5 |
247.4 |
O21 |
S19 |
C24 |
N22 |
112.9 |
112.6 |
C24 |
S19 |
N22 |
N1 |
97.8 |
60.0 |
C24 |
S19 |
N22 |
H22 |
217.9 |
240.0 |
C25 |
C24 |
S19 |
C30 |
180.2 |
179.7 |
S19 |
C24 |
C25 |
C26 |
179.9 |
179.9 |
S19 |
C24 |
C25 |
H25 |
359.9 |
0.2 |
S19 |
C24 |
C30 |
C29 |
180.1 |
180.0 |
S19 |
C24 |
C30 |
H30 |
0.1 |
359.9 |
N1 |
N22 |
S19 |
C24 |
97.8 |
60.0 |
S19 |
N22 |
N1 |
H22 |
120.0 |
180.0 |
C9 |
N1 |
N22 |
C7 |
184.8 |
180.0 |
N22 |
N1 |
C9 |
S1 |
187.1 |
180.0 |
N22 |
N1 |
C9 |
S2 |
8.1 |
360.0 |
N22 |
N1 |
C7 |
C14 |
188.5 |
179.9 |
N22 |
N1 |
C7 |
O1 |
7.2 |
0.0 |
H22 |
N22 |
S19 |
C24 |
217.9 |
240.0 |
S19 |
N22 |
H22 |
N1 |
235.0 |
180.0 |
H22 |
N22 |
N1 |
C9 |
333.2 |
270.0 |
H22 |
N22 |
N1 |
C7 |
148.4 |
90.0 |
S19 |
C24 |
C25 |
C30 |
179.8 |
180.3 |
C25 |
C24 |
C30 |
C29 |
360.0 |
0.3 |
C25 |
C24 |
C30 |
H30 |
180.0 |
180.3 |
C26 |
C25 |
C24 |
H25 |
180.0 |
179.6 |
C24 |
C25 |
C26 |
C27 |
360.0 |
0.4 |
C24 |
C25 |
C26 |
H26 |
180.0 |
180.3 |
S19 |
C24 |
C30 |
C25 |
180.2 |
179.7 |
C30 |
C24 |
C25 |
C26 |
0.0 |
359.5 |
C30 |
C24 |
C25 |
H25 |
180.1 |
179.9 |
C27 |
C29 |
C30 |
C24 |
0.0 |
360.0 |
C24 |
C30 |
C29 |
H29 |
180.1 |
179.9 |
C29 |
C30 |
C24 |
H30 |
180.0 |
180.0 |
C26 |
C25 |
C24 |
C30 |
0.0 |
359.5 |
C24 |
C25 |
C26 |
H25 |
180.0 |
180.4 |
C27 |
C26 |
C25 |
H26 |
180.0 |
180.1 |
C25 |
C26 |
C27 |
C29 |
0.1 |
359.9 |
C25 |
C26 |
C27 |
H27 |
180.0 |
179.9 |
H25 |
C25 |
C24 |
C30 |
180.1 |
179.9 |
C24 |
C25 |
H25 |
C26 |
180.0 |
179.6 |
H25 |
C25 |
C26 |
C27 |
179.9 |
180.0 |
H25 |
C25 |
C26 |
H26 |
360.0 |
360.0 |
C27 |
C26 |
C25 |
H25 |
179.9 |
180.0 |
C25 |
C26 |
C27 |
H26 |
180.0 |
179.9 |
C29 |
C27 |
C26 |
H27 |
180.0 |
180.0 |
C26 |
C27 |
C29 |
C30 |
359.9 |
360.0 |
C26 |
C27 |
C29 |
H29 |
179.9 |
180.0 |
H26 |
C26 |
C25 |
H25 |
360.0 |
360.0 |
C25 |
C26 |
H26 |
C27 |
180.0 |
180.1 |
H26 |
C26 |
C27 |
C29 |
180.0 |
179.9 |
H26 |
C26 |
C27 |
H27 |
360.0 |
360.0 |
C24 |
C30 |
C29 |
C27 |
0.0 |
360.0 |
C29 |
C27 |
C26 |
H26 |
180.0 |
179.9 |
C26 |
C27 |
C29 |
H27 |
180.0 |
180.0 |
C30 |
C29 |
C27 |
H29 |
180.0 |
180.0 |
C27 |
C29 |
C30 |
H30 |
180.0 |
180.0 |
H27 |
C27 |
C26 |
H26 |
360.0 |
360.0 |
C26 |
C27 |
H27 |
C29 |
180.0 |
180.0 |
H27 |
C27 |
C29 |
C30 |
180.0 |
179.9 |
H27 |
C27 |
C29 |
H29 |
360.0 |
359.9 |
C24 |
C30 |
C29 |
H30 |
180.0 |
180.0 |
C30 |
C29 |
C27 |
H27 |
180.0 |
179.9 |
C27 |
C29 |
C30 |
H29 |
180.0 |
180.0 |
H29 |
C29 |
C27 |
H27 |
360.0 |
359.9 |
C27 |
C29 |
H29 |
C30 |
180.0 |
180.0 |
H29 |
C29 |
C30 |
H30 |
0.0 |
360.0 |
C24 |
C30 |
H30 |
C29 |
180.0 |
180.0 |
H30 |
C30 |
C29 |
H29 |
0.0 |
360.0 |
C14 |
C1 |
C2 |
H11 |
118.6 |
240.0 |
C14 |
C1 |
C2 |
H12 |
240.0 |
120.0 |
C2 |
C1 |
C14 |
C7 |
50.3 |
181.0 |
C2 |
C1 |
C14 |
S1 |
294.9 |
70.5 |
C2 |
C1 |
C14 |
H14 |
173.1 |
305.7 |
H11 |
C1 |
C2 |
H12 |
121.4 |
240.0 |
C4 |
C2 |
C1 |
C3 |
179.5 |
180.0 |
C1 |
C2 |
C4 |
C5 |
180.4 |
179.7 |
C1 |
C2 |
C4 |
H4 |
0.5 |
360.0 |
C1 |
C2 |
C3 |
C6 |
179.6 |
180.0 |
C1 |
C2 |
C3 |
H3 |
359.6 |
0.1 |
C2 |
C1 |
C14 |
H11 |
241.4 |
120.0 |
C2 |
C1 |
C14 |
H12 |
120.0 |
240.0 |
C14 |
C1 |
C2 |
C4 |
252.9 |
270.0 |
C14 |
C1 |
C2 |
C3 |
73.4 |
90.0 |
H11 |
C1 |
C14 |
H12 |
238.6 |
120.0 |
N1 |
C7 |
C14 |
C1 |
221.4 |
242.4 |
C9 |
S1 |
C14 |
C1 |
139.1 |
117.6 |
C7 |
C14 |
C1 |
S1 |
115.4 |
110.5 |
C7 |
C14 |
C1 |
H14 |
237.1 |
235.3 |
C1 |
C14 |
C7 |
O1 |
42.7 |
62.3 |
S1 |
C14 |
C1 |
H14 |
121.8 |
124.8 |
C2 |
C1 |
H11 |
C14 |
121.8 |
240.0 |
C2 |
C1 |
H11 |
H12 |
240.9 |
120.0 |
H11 |
C1 |
C2 |
C4 |
134.3 |
30.0 |
H11 |
C1 |
C2 |
C3 |
314.8 |
210.0 |
C14 |
C1 |
H11 |
H12 |
119.1 |
240.0 |
H11 |
C1 |
C14 |
C7 |
168.9 |
61.0 |
H11 |
C1 |
C14 |
S1 |
53.5 |
310.5 |
H11 |
C1 |
C14 |
H14 |
291.7 |
185.7 |
C2 |
C1 |
H12 |
C14 |
237.3 |
120.0 |
C2 |
C1 |
H12 |
H11 |
118.7 |
240.0 |
H12 |
C1 |
C2 |
C4 |
12.9 |
150.0 |
H12 |
C1 |
C2 |
C3 |
193.4 |
330.0 |
C14 |
C1 |
H12 |
H11 |
241.4 |
120.1 |
H12 |
C1 |
C14 |
C7 |
290.2 |
300.9 |
H12 |
C1 |
C14 |
S1 |
174.9 |
190.5 |
H12 |
C1 |
C14 |
H14 |
53.1 |
65.7 |
C4 |
C2 |
C1 |
C14 |
252.9 |
270.0 |
C4 |
C2 |
C1 |
H11 |
134.3 |
30.0 |
C4 |
C2 |
C1 |
H12 |
12.9 |
150.0 |
C1 |
C2 |
C4 |
C3 |
180.5 |
180.0 |
C4 |
C2 |
C3 |
C6 |
0.1 |
360.0 |
C4 |
C2 |
C3 |
H3 |
180.2 |
180.1 |
C5 |
C4 |
C2 |
H4 |
180.0 |
179.7 |
C2 |
C4 |
C5 |
C8 |
0.1 |
0.7 |
C2 |
C4 |
C5 |
H5 |
180.0 |
180.0 |
C3 |
C2 |
C1 |
C14 |
73.4 |
90.0 |
C3 |
C2 |
C1 |
H11 |
314.8 |
210.0 |
C3 |
C2 |
C1 |
H12 |
193.4 |
330.0 |
C1 |
C2 |
C3 |
C4 |
179.5 |
180.0 |
C3 |
C2 |
C4 |
C5 |
359.9 |
359.7 |
C3 |
C2 |
C4 |
H4 |
179.9 |
180.0 |
C8 |
C6 |
C3 |
C2 |
359.9 |
0.0 |
C2 |
C3 |
C6 |
H6 |
179.9 |
180.0 |
C6 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
C5 |
C4 |
C2 |
C3 |
359.9 |
359.7 |
C2 |
C4 |
C5 |
H4 |
180.0 |
180.3 |
C8 |
C5 |
C4 |
H5 |
180.0 |
180.6 |
C4 |
C5 |
C8 |
C6 |
360.0 |
359.3 |
C4 |
C5 |
C8 |
BR1 |
180.0 |
179.7 |
H4 |
C4 |
C2 |
C3 |
179.9 |
180.0 |
C2 |
C4 |
H4 |
C5 |
180.0 |
179.7 |
H4 |
C4 |
C5 |
C8 |
180.0 |
180.3 |
H4 |
C4 |
C5 |
H5 |
360.0 |
359.7 |
C8 |
C5 |
C4 |
H4 |
180.0 |
180.3 |
C4 |
C5 |
C8 |
H5 |
180.0 |
179.4 |
C5 |
C8 |
C6 |
C3 |
0.1 |
0.3 |
C5 |
C8 |
C6 |
H6 |
180.1 |
180.3 |
C6 |
C8 |
C5 |
BR1 |
180.0 |
179.7 |
H5 |
C5 |
C4 |
H4 |
360.0 |
359.7 |
C4 |
C5 |
H5 |
C8 |
180.0 |
180.6 |
H5 |
C5 |
C8 |
C6 |
180.0 |
180.0 |
H5 |
C5 |
C8 |
BR1 |
360.0 |
0.3 |
C2 |
C3 |
C6 |
C8 |
359.9 |
0.0 |
C6 |
C8 |
C5 |
H5 |
180.0 |
180.0 |
C5 |
C8 |
C6 |
BR1 |
180.0 |
180.3 |
C3 |
C6 |
C8 |
H6 |
180.0 |
180.0 |
C8 |
C6 |
C3 |
H3 |
179.8 |
179.9 |
C2 |
C3 |
C6 |
H3 |
180.0 |
180.1 |
C8 |
C6 |
C3 |
H6 |
180.0 |
180.0 |
C3 |
C6 |
C8 |
BR1 |
180.1 |
180.0 |
C8 |
C6 |
H6 |
C3 |
180.0 |
180.0 |
H6 |
C6 |
C8 |
BR1 |
0.1 |
360.0 |
H6 |
C6 |
C3 |
H3 |
359.9 |
359.9 |
BR1 |
C8 |
C5 |
H5 |
360.0 |
0.3 |
C5 |
C8 |
BR1 |
C6 |
180.0 |
179.7 |
BR1 |
C8 |
C6 |
C3 |
180.1 |
180.0 |
BR1 |
C8 |
C6 |
H6 |
0.1 |
360.0 |
C9 |
N1 |
N22 |
H22 |
333.2 |
270.0 |
N22 |
N1 |
C9 |
C7 |
175.8 |
180.0 |
C9 |
N1 |
C7 |
C14 |
3.9 |
359.9 |
C9 |
N1 |
C7 |
O1 |
182.6 |
180.0 |
S1 |
C9 |
N1 |
S2 |
179.0 |
180.1 |
N1 |
C9 |
S1 |
C14 |
341.5 |
360.0 |
C7 |
N1 |
N22 |
H22 |
148.4 |
90.0 |
N22 |
N1 |
C7 |
C9 |
184.6 |
180.0 |
C1 |
C14 |
C7 |
N1 |
221.4 |
242.4 |
C7 |
N1 |
C9 |
S1 |
11.4 |
0.0 |
C7 |
N1 |
C9 |
S2 |
192.3 |
180.0 |
N1 |
C7 |
C14 |
S1 |
343.5 |
0.0 |
N1 |
C7 |
C14 |
H14 |
105.1 |
117.7 |
C14 |
C7 |
N1 |
O1 |
181.3 |
179.9 |
C1 |
C14 |
S1 |
C9 |
139.1 |
117.6 |
S1 |
C9 |
N1 |
C7 |
11.4 |
0.0 |
N1 |
C9 |
S1 |
S2 |
180.9 |
179.9 |
C7 |
C14 |
S1 |
C9 |
18.2 |
360.0 |
C9 |
S1 |
C14 |
H14 |
255.4 |
242.4 |
S2 |
C9 |
N1 |
C7 |
192.3 |
180.0 |
N1 |
C9 |
S2 |
S1 |
178.9 |
180.1 |
S2 |
C9 |
S1 |
C14 |
160.6 |
180.1 |
C7 |
C14 |
C1 |
H11 |
168.9 |
61.0 |
C7 |
C14 |
C1 |
H12 |
290.2 |
300.9 |
C1 |
C14 |
C7 |
S1 |
237.9 |
242.3 |
C1 |
C14 |
C7 |
H14 |
116.3 |
124.7 |
N1 |
C7 |
C14 |
O1 |
178.6 |
180.1 |
C9 |
S1 |
C14 |
C7 |
18.2 |
360.0 |
S1 |
C14 |
C7 |
H14 |
238.4 |
242.4 |
S1 |
C14 |
C1 |
H11 |
53.5 |
310.5 |
S1 |
C14 |
C1 |
H12 |
174.9 |
190.5 |
C1 |
C14 |
S1 |
C7 |
120.9 |
117.7 |
C1 |
C14 |
S1 |
H14 |
243.7 |
235.3 |
C14 |
S1 |
C9 |
S2 |
160.6 |
180.1 |
C7 |
C14 |
S1 |
H14 |
122.8 |
117.6 |
S1 |
C14 |
C7 |
O1 |
164.8 |
180.0 |
H14 |
C14 |
C1 |
H11 |
291.7 |
185.7 |
H14 |
C14 |
C1 |
H12 |
53.1 |
65.7 |
C1 |
C14 |
H14 |
C7 |
238.6 |
235.2 |
C1 |
C14 |
H14 |
S1 |
122.6 |
124.8 |
C7 |
C14 |
H14 |
S1 |
244.1 |
249.5 |
H14 |
C14 |
C7 |
O1 |
286.5 |
297.6 |
N1 |
C7 |
O1 |
C14 |
181.4 |
179.9 |
O1 |
C7 |
C14 |
S1 |
164.8 |
180.0 |
O1 |
C7 |
C14 |
H14 |
286.5 |
297.6 |
C2 |
C3 |
H3 |
C6 |
180.0 |
179.9 |
H3 |
C3 |
C6 |
H6 |
359.9 |
359.9 |