PDB Chemical Component 5GX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5GX

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
CL	C02	1.684	1.735
C02	C03	1.378	1.396
C02	C29	1.464	1.384
C03	C04	1.519	1.482
C03	C16	1.448	1.410
C04	C05	1.413	1.365
C04	C15	1.411	1.409
C05	N06	1.369	1.348
N06	C07	1.493	1.464
N06	N14	1.417	1.400
C07	C08	1.527	1.507
C08	C09	1.413	1.383
C08	C13	1.399	1.382
C09	C10	1.386	1.382
C10	C11	1.423	1.382
C11	C12	1.419	1.383
C12	C13	1.413	1.383
N14	C15	1.429	1.306
C16	N17	1.449	1.354
C16	C27	1.442	1.404
N17	C18	1.330	1.311
C18	C19	1.482	1.478
C18	N26	1.460	1.370
C19	C20	1.421	1.377
C19	C24	1.403	1.411
C20	N21	1.294	1.347
N21	C22	1.435	1.465
N21	N23	1.467	1.400
N23	C24	1.344	1.305
C24	C25	1.466	1.507
N26	C27	1.373	1.380
C27	N28	1.338	1.324
N28	C29	1.391	1.318
C29	H29	1.080	1.080
C05	H05	1.080	1.080
C15	H15	1.080	1.080
C07	H071	1.100	1.090
C07	H072	1.100	1.090
C09	H09	1.080	1.080
C13	H13	1.080	1.080
C10	H10	1.080	1.080
C11	H11	1.080	1.080
C12	H12	1.080	1.079
N26	H26	1.000	0.969
C20	H20	1.081	1.080
C22	H221	1.100	1.090
C22	H222	1.100	1.090
C22	H223	1.100	1.090
C25	H251	1.100	1.090
C25	H252	1.100	1.091
C25	H253	1.100	1.089

Bond Angles for 5GX

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CL	C02	C03	119.9	120.3
CL	C02	C29	119.0	120.3
C03	C02	C29	121.0	119.4
C02	C03	C04	125.9	121.0
C02	C03	C16	118.3	117.9
C02	C29	N28	119.4	121.5
C02	C29	H29	120.3	119.2
C04	C03	C16	115.2	121.1
C03	C04	C05	121.6	126.3
C03	C04	C15	130.0	126.3
C03	C16	N17	131.3	133.6
C03	C16	C27	118.2	118.9
C05	C04	C15	107.7	107.5
C04	C05	N06	108.7	107.6
C04	C05	H05	125.7	126.2
C04	C15	N14	107.4	108.1
C04	C15	H15	126.3	125.9
C05	N06	C07	120.6	125.9
C05	N06	N14	109.2	108.2
N06	C05	H05	125.7	126.1
C07	N06	N14	130.2	125.9
N06	C07	C08	112.3	109.5
N06	C07	H071	108.8	109.5
N06	C07	H072	108.8	109.5
N06	N14	C15	106.7	108.6
C07	C08	C09	116.2	120.0
C07	C08	C13	121.8	120.0
C08	C07	H071	108.7	109.4
C08	C07	H072	108.7	109.4
C09	C08	C13	122.0	120.0
C08	C09	C10	119.4	120.0
C08	C09	H09	120.3	120.0
C08	C13	C12	118.6	120.0
C08	C13	H13	120.7	120.0
C09	C10	C11	120.1	120.0
C10	C09	H09	120.3	120.0
C09	C10	H10	119.9	120.0
C10	C11	C12	119.8	120.0
C11	C10	H10	120.0	120.0
C10	C11	H11	120.1	120.0
C11	C12	C13	120.1	119.9
C12	C11	H11	120.1	119.9
C11	C12	H12	119.9	120.0
C12	C13	H13	120.7	120.0
C13	C12	H12	120.0	120.1
N14	C15	H15	126.3	126.0
N17	C16	C27	110.5	107.5
C16	N17	C18	104.6	109.5
C16	C27	N26	105.3	106.1
C16	C27	N28	122.9	120.4
N17	C18	C19	125.9	125.2
N17	C18	N26	111.7	109.7
C19	C18	N26	122.4	125.1
C18	C19	C20	119.0	126.4
C18	C19	C24	130.6	126.3
C18	N26	C27	107.8	107.3
C18	N26	H26	126.1	126.4
C20	C19	C24	110.4	107.3
C19	C20	N21	105.6	107.4
C19	C20	H20	127.2	126.3
C19	C24	N23	106.3	108.0
C19	C24	C25	127.0	126.0
C20	N21	C22	122.7	125.8
C20	N21	N23	110.9	108.3
N21	C20	H20	127.2	126.2
C22	N21	N23	126.4	125.8
N21	C22	H221	109.5	109.4
N21	C22	H222	109.5	109.5
N21	C22	H223	109.5	109.5
N21	N23	C24	106.8	108.9
N23	C24	C25	126.7	126.0
C24	C25	H251	109.5	109.4
C24	C25	H252	109.5	109.4
C24	C25	H253	109.5	109.5
N26	C27	N28	131.9	133.5
C27	N26	H26	126.1	126.4
C27	N28	C29	120.1	121.9
N28	C29	H29	120.3	119.3
H071	C07	H072	109.4	109.5
H221	C22	H222	109.5	109.5
H221	C22	H223	109.5	109.5
H222	C22	H223	109.5	109.5
H251	C25	H252	109.4	109.5
H251	C25	H253	109.5	109.5
H252	C25	H253	109.5	109.5

Torsion Angles for 5GX

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C03	C02	CL	C29	182.1	180.3
CL	C02	C03	C04	352.7	0.0
CL	C02	C03	C16	181.2	180.0
CL	C02	C29	N28	180.8	179.7
CL	C02	C29	H29	0.8	0.0
CL	C02	C03	C29	177.9	179.7
C03	C02	C29	N28	358.6	359.4
C03	C02	C29	H29	178.7	179.8
C04	C03	C02	C16	171.4	180.0
C02	C03	C04	C05	338.9	65.0
C02	C03	C04	C15	169.9	244.6
C02	C03	C16	N17	178.9	180.0
C02	C03	C16	C27	356.7	0.0
CL	C02	C29	C03	182.1	180.3
C29	C02	C03	C04	174.8	180.3
C29	C02	C03	C16	3.4	0.2
C27	N28	C29	C02	359.2	0.6
N28	C29	C02	H29	180.0	179.7
C04	C03	C02	C29	174.8	180.3
C02	C03	C04	C16	188.3	180.0
C04	C03	C16	N17	6.5	360.0
C04	C03	C16	C27	184.4	180.0
C05	C04	C03	C15	169.0	180.4
C03	C04	C05	N06	184.1	180.0
C03	C04	C05	H05	4.1	359.9
C03	C04	C15	N14	174.2	179.9
C03	C04	C15	H15	354.2	0.0
C16	C03	C02	C29	3.4	0.2
C02	C03	C16	C04	172.3	180.0
C16	C03	C04	C05	150.6	245.1
C16	C03	C04	C15	341.6	64.7
N17	C16	C03	C27	182.1	180.0
C03	C16	N17	C18	178.5	180.0
C03	C16	C27	N26	181.5	180.0
C03	C16	C27	N28	1.2	0.0
C05	C04	C03	C16	150.6	245.1
C03	C04	C05	C15	188.8	179.7
C05	C04	C15	N14	4.0	359.5
C05	C04	C15	H15	184.0	179.7
C04	C05	N06	C07	181.8	180.0
C04	C05	N06	N14	3.6	360.0
N06	C05	C04	H05	180.0	180.0
C15	C04	C03	C16	341.6	64.7
C03	C04	C15	C05	170.2	180.3
C15	C04	C05	N06	355.3	0.3
C15	C04	C05	H05	175.3	180.3
N06	N14	C15	C04	358.1	0.5
N14	C15	C04	H15	180.0	179.8
N06	C05	C04	C15	355.3	0.3
C04	C05	N06	H05	180.0	180.0
C07	N06	C05	N14	178.2	180.0
C05	N06	C07	C08	115.9	125.0
C05	N06	C07	H071	236.3	245.0
C05	N06	C07	H072	355.4	5.0
C05	N06	N14	C15	358.9	359.7
C05	N06	C07	N14	182.2	180.0
C07	N06	C05	H05	1.8	360.0
C07	N06	N14	C15	181.0	179.7
N06	C07	C08	C09	30.7	90.0
N06	C07	C08	C13	208.5	269.8
C08	C07	N06	H071	239.6	240.0
C08	C07	N06	H072	120.4	120.0
H071	C07	N06	H072	240.9	240.0
C04	C15	N14	N06	358.1	0.5
C05	N06	N14	C07	178.0	180.0
N14	N06	C05	H05	183.6	180.0
N14	N06	C07	C08	293.7	305.0
N14	N06	C07	H071	54.1	65.0
N14	N06	C07	H072	173.2	185.0
N06	N14	C15	H15	178.2	180.3
C08	C07	N06	N14	293.7	305.0
N06	C07	C08	H071	120.4	120.0
N06	C07	C08	H072	239.5	240.0
C09	C08	C07	C13	182.2	180.2
C07	C08	C09	C10	178.2	180.0
C07	C08	C09	H09	358.2	0.0
C07	C08	C13	C12	182.0	179.8
C07	C08	C13	H13	2.0	360.0
H071	C07	C08	H072	119.1	119.9
C07	C08	C09	C13	177.8	179.8
C09	C08	C07	H071	270.2	330.0
C09	C08	C07	H072	151.1	210.0
C09	C08	C13	C12	359.6	359.5
C09	C08	C13	H13	179.6	179.7
C08	C09	C10	C11	0.1	360.0
C10	C09	C08	H09	180.0	180.0
C08	C09	C10	H10	180.1	180.0
C07	C08	C13	C09	182.3	180.2
C13	C08	C07	H071	88.0	149.7
C13	C08	C07	H072	328.9	29.8
C13	C08	C09	C10	0.4	0.3
C13	C08	C09	H09	180.4	180.3
C11	C12	C13	C08	359.8	0.4
C12	C13	C08	H13	180.0	179.8
C08	C13	C12	H12	179.8	180.2
C10	C09	C08	C13	0.4	0.3
C08	C09	C10	H09	180.0	180.0
C09	C10	C11	C12	359.4	0.0
C11	C10	C09	H10	180.0	179.9
C09	C10	C11	H11	179.4	180.0
C11	C10	C09	H09	180.1	180.0
C09	C10	C11	H10	180.0	180.1
C10	C11	C12	C13	0.7	359.8
C12	C11	C10	H11	180.0	180.1
C10	C11	C12	H12	180.7	180.0
C08	C13	C12	C11	359.8	0.4
C12	C11	C10	H10	179.4	180.0
C10	C11	C12	H11	180.0	179.9
C11	C12	C13	H13	179.8	180.2
C13	C12	C11	H12	180.0	179.8
C08	C13	C12	H13	180.0	180.2
C13	C12	C11	H11	180.7	179.8
C11	C12	C13	H12	180.0	180.2
C04	C15	N14	H15	180.0	180.2
C03	C16	N17	C27	178.0	180.0
N17	C16	C27	N26	359.8	0.0
N17	C16	C27	N28	179.5	180.0
C16	N17	C18	C19	180.4	180.0
C16	N17	C18	N26	359.4	0.0
C03	C16	C27	N17	181.7	180.0
C27	C16	N17	C18	0.5	360.0
C18	N26	C27	C16	359.8	360.0
N26	C27	C16	N28	180.3	180.0
C16	C27	N26	H26	179.9	180.0
C16	C27	N28	C29	0.9	359.6
C18	N17	C16	C27	0.5	360.0
C19	C18	N17	N26	181.0	180.0
N17	C18	C19	C20	175.7	180.0
N17	C18	C19	C24	355.9	359.6
N17	C18	N26	C27	0.5	360.0
N17	C18	N26	H26	180.5	180.0
N17	C18	C19	N26	178.9	180.0
C19	C18	N26	C27	179.6	180.0
C19	C18	N26	H26	359.5	360.0
C20	C19	C18	C24	179.8	180.4
C18	C19	C20	N21	180.1	179.9
C18	C19	C20	H20	0.1	359.9
C18	C19	C24	N23	179.7	179.9
C18	C19	C24	C25	359.3	0.0
C16	C27	N26	C18	359.8	360.0
N17	C18	N26	C19	181.0	180.0
N26	C18	C19	C20	356.8	0.1
N26	C18	C19	C24	177.0	179.7
C18	N26	C27	N28	180.2	180.0
C27	N26	C18	H26	180.0	180.0
C20	C19	C18	N26	356.8	0.1
C18	C19	C20	C24	180.2	179.7
C20	C19	C24	N23	359.9	359.6
C20	C19	C24	C25	179.5	179.7
C19	C20	N21	C22	179.8	180.0
C19	C20	N21	N23	0.2	0.0
N21	C20	C19	H20	180.0	180.0
C24	C19	C18	N26	177.0	179.7
C18	C19	C24	C20	179.8	180.3
C24	C19	C20	N21	359.9	0.3
C24	C19	C20	H20	179.9	180.2
N21	N23	C24	C19	0.2	0.4
N23	C24	C19	C25	180.4	179.9
C19	C24	C25	H251	180.5	90.0
C19	C24	C25	H252	300.5	210.0
C19	C24	C25	H253	60.5	330.0
N21	C20	C19	C24	359.9	0.3
C19	C20	N21	H20	180.0	180.0
C22	N21	C20	N23	179.6	180.0
C20	N21	C22	H221	180.5	90.0
C20	N21	C22	H222	300.5	210.0
C20	N21	C22	H223	60.4	330.0
C20	N21	N23	C24	359.7	359.7
C20	N21	C22	N23	180.5	180.1
C22	N21	C20	H20	359.8	360.0
C22	N21	N23	C24	180.1	179.8
H221	C22	N21	H222	240.0	240.0
H221	C22	N21	H223	120.0	120.0
H222	C22	N21	H223	240.0	240.0
C19	C24	N23	N21	0.2	0.4
C20	N21	N23	C22	179.6	180.0
N23	N21	C20	H20	180.2	180.0
N23	N21	C22	H221	0.0	270.0
N23	N21	C22	H222	120.0	30.0
N23	N21	C22	H223	240.0	150.0
N21	N23	C24	C25	180.6	180.3
C19	C24	N23	C25	179.6	180.1
N23	C24	C25	H251	360.0	270.2
N23	C24	C25	H252	120.0	30.2
N23	C24	C25	H253	240.0	150.1
C19	C24	C25	N23	180.5	179.8
H251	C25	C24	H252	240.0	240.0
H251	C25	C24	H253	120.0	120.0
H252	C25	C24	H253	240.0	240.0
C16	C27	N26	N28	179.6	180.0
C18	N26	C27	H26	180.0	180.0
N26	C27	N28	C29	180.4	179.7
C02	C29	N28	C27	359.2	0.6
C16	C27	N28	N26	180.4	180.0
N28	C27	N26	H26	0.2	360.0
C27	N28	C29	H29	179.1	180.3
C02	C29	N28	H29	180.0	180.3
C02	C29	H29	N28	180.0	179.7
H05	C05	C04	C15	175.3	180.3
C04	C05	H05	N06	180.0	180.0
H05	C05	N06	C07	1.8	360.0
H05	C05	N06	N14	183.6	180.0
C04	C15	H15	N14	180.0	179.8
H071	C07	N06	N14	54.1	65.0
N06	C07	H071	C08	237.4	240.0
N06	C07	H071	H072	118.7	120.1
H071	C07	C08	C09	270.2	330.0
H071	C07	C08	C13	88.0	149.7
C08	C07	H071	H072	241.3	240.1
H072	C07	N06	N14	173.2	185.0
N06	C07	H072	C08	122.6	120.0
N06	C07	H072	H071	241.3	239.9
H072	C07	C08	C09	151.1	210.0
H072	C07	C08	C13	328.9	29.8
C08	C07	H072	H071	118.7	119.9
H09	C09	C08	C13	180.4	180.3
C08	C09	H09	C10	180.0	180.0
H09	C09	C10	C11	180.1	180.0
H09	C09	C10	H10	0.1	0.0
C08	C13	H13	C12	180.0	179.8
H13	C13	C12	H12	359.8	0.0
C09	C10	H10	C11	180.0	179.9
H10	C10	C09	H09	0.1	0.0
H10	C10	C11	C12	179.4	180.0
H10	C10	C11	H11	359.4	359.9
C10	C11	H11	C12	180.0	180.1
H11	C11	C10	H10	359.4	359.9
H11	C11	C12	C13	180.7	179.8
H11	C11	C12	H12	0.7	0.0
C11	C12	H12	C13	180.0	179.8
H12	C12	C11	H11	0.7	0.0
H12	C12	C13	H13	359.8	0.0
C18	N26	H26	C27	180.0	180.0
H26	N26	C27	N28	0.2	360.0
H20	C20	C19	C24	179.9	180.2
C19	C20	H20	N21	180.0	180.0
H20	C20	N21	C22	359.8	360.0
H20	C20	N21	N23	180.2	180.0
H221	C22	N21	N23	0.0	270.0
N21	C22	H221	H222	120.0	120.0
N21	C22	H221	H223	240.0	240.0
H222	C22	H221	H223	120.0	120.0
H222	C22	N21	N23	120.0	30.0
N21	C22	H222	H221	240.0	240.0
N21	C22	H222	H223	120.0	120.0
H221	C22	H222	H223	240.0	240.0
H223	C22	N21	N23	240.0	150.0
N21	C22	H223	H221	120.0	119.9
N21	C22	H223	H222	240.0	240.0
H221	C22	H223	H222	120.0	120.0
C24	C25	H251	H252	120.0	120.0
C24	C25	H251	H253	240.0	240.0
H252	C25	H251	H253	120.0	120.0
C24	C25	H252	H251	240.0	240.0
C24	C25	H252	H253	120.0	120.0
H251	C25	H252	H253	240.0	239.9
C24	C25	H253	H251	120.0	120.0
C24	C25	H253	H252	240.0	240.0
H251	C25	H253	H252	120.0	120.0