PDB Chemical Component 5GW
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5GW
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OAA |
CAW |
1.339 |
1.217 |
| NAQ |
CAW |
1.351 |
1.350 |
| NAQ |
CAX |
1.364 |
1.344 |
| OAB |
CAX |
1.247 |
1.215 |
| CAW |
CAV |
1.402 |
1.469 |
| CAX |
NBC |
1.321 |
1.343 |
| CAM |
CAK |
1.395 |
1.380 |
| CAM |
CAU |
1.390 |
1.394 |
| C2' |
O2' |
1.392 |
1.429 |
| C2' |
C3' |
1.465 |
1.546 |
| C2' |
C1' |
1.461 |
1.545 |
| CAV |
CAU |
1.497 |
1.483 |
| CAV |
CAO |
1.398 |
1.364 |
| NBC |
CAO |
1.365 |
1.366 |
| NBC |
C1' |
1.470 |
1.465 |
| CAK |
CAJ |
1.387 |
1.383 |
| O3' |
C3' |
1.387 |
1.429 |
| CAU |
CAN |
1.393 |
1.394 |
| C3' |
C4' |
1.481 |
1.544 |
| C1' |
O4' |
1.459 |
1.445 |
| OAD |
PBE |
1.489 |
1.480 |
| OAI |
PBE |
1.526 |
1.610 |
| CAJ |
CAL |
1.397 |
1.384 |
| CAN |
CAL |
1.388 |
1.380 |
| PBE |
O5' |
1.606 |
1.610 |
| PBE |
OAT |
1.544 |
1.611 |
| C4' |
O4' |
1.408 |
1.444 |
| C4' |
C5' |
1.487 |
1.530 |
| O5' |
C5' |
1.383 |
1.430 |
| OAH |
PBD |
1.556 |
1.479 |
| OAT |
PBD |
1.588 |
1.610 |
| OAG |
PBD |
1.483 |
1.610 |
| PBD |
OAC |
1.484 |
1.610 |
| CAM |
H1 |
1.080 |
1.080 |
| CAK |
H2 |
1.080 |
1.079 |
| CAJ |
H3 |
1.080 |
1.080 |
| CAL |
H4 |
1.080 |
1.080 |
| CAN |
H5 |
1.080 |
1.079 |
| CAO |
H6 |
1.080 |
1.079 |
| NAQ |
H7 |
0.999 |
0.969 |
| C1' |
H8 |
1.100 |
1.090 |
| C2' |
H9 |
1.100 |
1.090 |
| O2' |
H10 |
0.950 |
0.967 |
| C3' |
H11 |
1.100 |
1.089 |
| O3' |
H12 |
0.950 |
0.967 |
| C4' |
H13 |
1.100 |
1.091 |
| C5' |
H14 |
1.099 |
1.090 |
| C5' |
H15 |
1.100 |
1.089 |
| OAI |
H16 |
0.950 |
0.967 |
| OAG |
H17 |
0.949 |
0.967 |
| OAC |
H18 |
0.950 |
0.967 |
Bond Angles for 5GW
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NAQ |
CAX |
NBC |
122.2 |
121.9 |
| CAX |
NAQ |
H7 |
120.1 |
119.9 |
| OAB |
CAX |
NBC |
118.6 |
119.0 |
| CAX |
NBC |
C1' |
120.1 |
119.4 |
| CAK |
CAM |
CAU |
120.0 |
119.9 |
| CAM |
CAK |
CAJ |
120.0 |
120.1 |
| CAK |
CAM |
H1 |
120.0 |
120.1 |
| CAM |
CAK |
H2 |
120.0 |
119.9 |
| CAM |
CAU |
CAN |
119.9 |
119.7 |
| CAU |
CAM |
H1 |
120.0 |
120.0 |
| O2' |
C2' |
C3' |
110.4 |
110.5 |
| O2' |
C2' |
H9 |
112.6 |
110.5 |
| C2' |
O2' |
H10 |
109.5 |
114.0 |
| C2' |
C3' |
C4' |
102.9 |
104.1 |
| C3' |
C2' |
H9 |
111.5 |
110.5 |
| C2' |
C3' |
H11 |
111.1 |
110.5 |
| C2' |
C1' |
H8 |
110.3 |
110.5 |
| CAV |
CAO |
H6 |
120.1 |
120.2 |
| NBC |
CAO |
H6 |
120.1 |
120.3 |
| NBC |
C1' |
O4' |
107.7 |
110.4 |
| NBC |
C1' |
H8 |
110.2 |
110.4 |
| CAK |
CAJ |
CAL |
119.9 |
120.3 |
| CAJ |
CAK |
H2 |
120.0 |
119.9 |
| CAK |
CAJ |
H3 |
120.0 |
119.9 |
| O3' |
C3' |
C4' |
112.3 |
110.5 |
| O3' |
C3' |
H11 |
112.4 |
110.7 |
| CAU |
CAN |
H5 |
120.0 |
120.1 |
| C3' |
C4' |
C5' |
113.0 |
110.4 |
| C4' |
C3' |
H11 |
110.9 |
110.5 |
| C3' |
C4' |
H13 |
109.8 |
110.4 |
| O4' |
C1' |
H8 |
110.3 |
110.3 |
| OAD |
PBE |
OAT |
111.7 |
109.5 |
| OAI |
PBE |
OAT |
110.8 |
109.5 |
| CAL |
CAJ |
H3 |
120.0 |
119.9 |
| CAJ |
CAL |
H4 |
120.0 |
120.0 |
| CAN |
CAL |
H4 |
120.0 |
119.9 |
| PBE |
OAT |
PBD |
130.0 |
134.0 |
| C5' |
C4' |
H13 |
109.7 |
110.4 |
| C4' |
C5' |
H14 |
107.8 |
109.5 |
| C4' |
C5' |
H15 |
107.7 |
109.5 |
| O5' |
C5' |
H14 |
107.8 |
109.4 |
| O5' |
C5' |
H15 |
107.8 |
109.4 |
| OAH |
PBD |
OAC |
106.5 |
109.5 |
| OAT |
PBD |
OAC |
107.1 |
109.4 |
| OAG |
PBD |
OAC |
114.6 |
109.5 |
| PBD |
OAC |
H18 |
109.5 |
114.1 |
| H14 |
C5' |
H15 |
109.5 |
109.5 |
Torsion Angles for 5GW
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAB |
CAX |
NAQ |
NBC |
180.0 |
179.7 |
| NAQ |
CAX |
NBC |
C1' |
179.9 |
180.0 |
| NAQ |
CAX |
OAB |
NBC |
180.0 |
180.3 |
| OAB |
CAX |
NAQ |
H7 |
0.0 |
0.0 |
| OAB |
CAX |
NBC |
C1' |
360.0 |
0.3 |
| CAW |
CAV |
CAO |
H6 |
179.6 |
180.3 |
| NBC |
CAX |
NAQ |
H7 |
180.0 |
180.3 |
| CAX |
NBC |
CAO |
H6 |
180.3 |
180.0 |
| CAX |
NBC |
C1' |
O4' |
203.6 |
53.5 |
| CAX |
NBC |
C1' |
H8 |
324.0 |
175.8 |
| CAK |
CAM |
CAU |
CAN |
359.4 |
359.9 |
| CAU |
CAM |
CAK |
H1 |
180.0 |
180.3 |
| CAM |
CAK |
CAJ |
CAL |
360.0 |
359.9 |
| CAJ |
CAK |
CAM |
H2 |
180.0 |
180.1 |
| CAM |
CAK |
CAJ |
H3 |
180.0 |
180.0 |
| CAU |
CAM |
CAK |
CAJ |
0.3 |
0.0 |
| CAK |
CAM |
CAU |
H1 |
180.0 |
179.7 |
| CAU |
CAM |
CAK |
H2 |
180.3 |
180.0 |
| CAM |
CAU |
CAN |
H5 |
180.6 |
180.0 |
| O2' |
C2' |
C3' |
C4' |
284.4 |
241.4 |
| C3' |
C2' |
O2' |
H9 |
234.7 |
237.4 |
| O2' |
C2' |
C3' |
H11 |
165.6 |
122.8 |
| O2' |
C2' |
C1' |
H8 |
330.4 |
23.8 |
| O2' |
C2' |
C3' |
H9 |
125.9 |
122.6 |
| C3' |
C2' |
O2' |
H10 |
180.0 |
298.5 |
| C3' |
C2' |
C1' |
H8 |
214.0 |
265.2 |
| O3' |
C3' |
C2' |
C4' |
118.4 |
118.6 |
| O3' |
C3' |
C2' |
H11 |
237.1 |
237.2 |
| C2' |
C3' |
C4' |
C5' |
200.5 |
217.2 |
| C4' |
C3' |
C2' |
H11 |
118.7 |
118.6 |
| C2' |
C3' |
C4' |
H13 |
77.7 |
94.9 |
| NBC |
C1' |
C2' |
H8 |
237.9 |
237.6 |
| O4' |
C1' |
C2' |
H8 |
120.5 |
118.8 |
| CAV |
CAU |
CAM |
H1 |
0.4 |
0.3 |
| CAV |
CAU |
CAN |
H5 |
359.6 |
359.9 |
| NBC |
CAO |
CAV |
H6 |
180.0 |
180.0 |
| CAV |
CAO |
NBC |
H6 |
180.0 |
180.0 |
| C2' |
C1' |
NBC |
H8 |
122.1 |
122.4 |
| C1' |
NBC |
CAO |
H6 |
0.2 |
359.7 |
| O4' |
C1' |
NBC |
H8 |
239.6 |
237.8 |
| CAJ |
CAK |
CAM |
CAU |
0.3 |
0.0 |
| CAJ |
CAK |
CAM |
H1 |
180.3 |
179.8 |
| CAM |
CAK |
CAJ |
H2 |
180.0 |
179.9 |
| CAL |
CAJ |
CAK |
H3 |
180.0 |
180.0 |
| CAK |
CAJ |
CAL |
H4 |
180.0 |
180.0 |
| C2' |
C3' |
O3' |
C4' |
248.0 |
245.4 |
| O3' |
C3' |
C2' |
H9 |
276.8 |
237.4 |
| C2' |
C3' |
O3' |
H11 |
122.1 |
122.7 |
| O3' |
C3' |
C4' |
C5' |
86.0 |
98.6 |
| C4' |
C3' |
O3' |
H11 |
234.2 |
237.3 |
| O3' |
C3' |
C4' |
H13 |
323.2 |
336.3 |
| CAN |
CAU |
CAM |
H1 |
179.4 |
180.2 |
| CAU |
CAN |
CAL |
H4 |
179.7 |
180.0 |
| C4' |
C3' |
C2' |
H9 |
158.4 |
118.8 |
| C2' |
C3' |
C4' |
H11 |
241.1 |
241.4 |
| O3' |
C3' |
C4' |
H11 |
126.6 |
122.8 |
| C5' |
C4' |
C3' |
H13 |
122.8 |
122.3 |
| C3' |
C4' |
C5' |
H14 |
169.0 |
305.0 |
| C3' |
C4' |
C5' |
H15 |
287.0 |
65.0 |
| C2' |
C1' |
O4' |
H8 |
239.5 |
241.1 |
| NBC |
C1' |
O4' |
H8 |
120.3 |
122.3 |
| OAI |
PBE |
OAD |
OAT |
235.3 |
240.0 |
| OAD |
PBE |
OAT |
PBD |
272.4 |
320.0 |
| OAD |
PBE |
OAI |
OAT |
125.2 |
120.0 |
| OAI |
PBE |
OAT |
PBD |
37.5 |
80.0 |
| CAL |
CAJ |
CAK |
H2 |
180.0 |
180.0 |
| CAK |
CAJ |
CAL |
H3 |
180.0 |
180.0 |
| CAN |
CAL |
CAJ |
H4 |
180.0 |
180.1 |
| CAM |
CAU |
CAN |
CAL |
0.6 |
0.1 |
| CAN |
CAL |
CAJ |
H3 |
180.0 |
180.1 |
| CAJ |
CAL |
CAN |
H4 |
180.0 |
179.9 |
| PBE |
O5' |
C5' |
H14 |
129.8 |
60.0 |
| PBE |
O5' |
C5' |
H15 |
11.7 |
300.0 |
| PBE |
OAT |
PBD |
OAC |
178.9 |
80.1 |
| C4' |
O4' |
C1' |
H8 |
121.1 |
78.4 |
| C5' |
C4' |
C3' |
H11 |
319.4 |
335.8 |
| C3' |
C4' |
C5' |
H13 |
237.2 |
237.7 |
| O5' |
C5' |
C4' |
H14 |
239.0 |
240.0 |
| O5' |
C5' |
C4' |
H15 |
121.0 |
120.0 |
| H14 |
C5' |
C4' |
H15 |
242.0 |
239.9 |
| O5' |
C5' |
C4' |
H13 |
170.8 |
307.3 |
| C4' |
C5' |
O5' |
H14 |
121.0 |
120.0 |
| C4' |
C5' |
O5' |
H15 |
239.0 |
240.0 |
| H14 |
C5' |
O5' |
H15 |
118.1 |
120.0 |
| OAT |
PBD |
OAH |
OAC |
114.1 |
120.0 |
| OAG |
PBD |
OAH |
OAC |
236.0 |
240.0 |
| OAH |
PBD |
OAC |
H18 |
360.0 |
180.0 |
| OAH |
PBD |
OAT |
OAC |
246.3 |
240.0 |
| OAG |
PBD |
OAT |
OAC |
127.0 |
120.0 |
| OAT |
PBD |
OAC |
H18 |
246.2 |
60.0 |
| OAH |
PBD |
OAG |
OAC |
119.0 |
120.0 |
| OAT |
PBD |
OAG |
OAC |
237.1 |
240.0 |
| OAG |
PBD |
OAC |
H18 |
120.2 |
300.0 |
| CAK |
CAM |
H1 |
CAU |
180.0 |
180.3 |
| H1 |
CAM |
CAK |
CAJ |
180.3 |
179.8 |
| H1 |
CAM |
CAK |
H2 |
0.3 |
359.7 |
| H1 |
CAM |
CAU |
CAN |
179.4 |
180.2 |
| H2 |
CAK |
CAM |
CAU |
180.3 |
180.0 |
| CAM |
CAK |
H2 |
CAJ |
180.0 |
180.1 |
| H2 |
CAK |
CAM |
H1 |
0.3 |
359.7 |
| H2 |
CAK |
CAJ |
CAL |
180.0 |
180.0 |
| H2 |
CAK |
CAJ |
H3 |
0.0 |
0.0 |
| CAK |
CAJ |
H3 |
CAL |
180.0 |
180.0 |
| H3 |
CAJ |
CAK |
H2 |
0.0 |
0.0 |
| H3 |
CAJ |
CAL |
H4 |
360.0 |
360.0 |
| H4 |
CAL |
CAJ |
H3 |
360.0 |
360.0 |
| H5 |
CAN |
CAL |
H4 |
359.7 |
0.1 |
| H7 |
NAQ |
CAX |
NBC |
180.0 |
180.3 |
| NBC |
C1' |
H8 |
O4' |
241.2 |
237.7 |
| O2' |
C2' |
H9 |
C3' |
235.3 |
237.4 |
| H9 |
C2' |
O2' |
H10 |
305.3 |
61.1 |
| H9 |
C2' |
C3' |
C4' |
158.4 |
118.8 |
| H9 |
C2' |
C3' |
H11 |
39.7 |
0.2 |
| H9 |
C2' |
C1' |
H8 |
95.5 |
146.4 |
| H10 |
O2' |
C2' |
C3' |
180.0 |
298.5 |
| H10 |
O2' |
C2' |
H9 |
305.3 |
61.1 |
| C2' |
C3' |
H11 |
C4' |
113.8 |
114.6 |
| H11 |
C3' |
C2' |
H9 |
39.7 |
0.2 |
| O3' |
C3' |
H11 |
C4' |
233.4 |
237.3 |
| H11 |
C3' |
C4' |
C5' |
319.4 |
335.8 |
| H11 |
C3' |
C4' |
H13 |
196.6 |
213.4 |
| H12 |
O3' |
C3' |
C4' |
292.0 |
176.1 |
| H12 |
O3' |
C3' |
H11 |
57.9 |
298.8 |
| C3' |
C4' |
H13 |
C5' |
124.7 |
122.3 |
| H13 |
C4' |
C3' |
H11 |
196.6 |
213.4 |
| H13 |
C4' |
C5' |
H14 |
291.8 |
67.3 |
| H13 |
C4' |
C5' |
H15 |
49.8 |
187.4 |
| H14 |
C5' |
C4' |
H13 |
291.8 |
67.3 |
| C4' |
C5' |
H14 |
H15 |
116.9 |
120.1 |
| O5' |
C5' |
H14 |
H15 |
243.0 |
240.0 |
| H15 |
C5' |
C4' |
H13 |
49.8 |
187.4 |
| C4' |
C5' |
H15 |
H14 |
243.0 |
240.0 |
| O5' |
C5' |
H15 |
H14 |
117.0 |
120.0 |
| H16 |
OAI |
PBE |
OAT |
234.9 |
60.0 |
| H17 |
OAG |
PBD |
OAC |
241.0 |
300.0 |