PDB Chemical Component 5GF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5GF

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O5	C1	1.437	1.429
O5	C5	1.436	1.429
C1	C2	1.545	1.531
C1	O1	1.337	1.429
F	C5	1.332	1.399
C2	O2	1.434	1.429
C2	C3	1.521	1.532
C3	O3	1.435	1.429
C3	C4	1.518	1.533
C4	O4	1.433	1.429
C4	C5	1.530	1.531
C6	O6	1.428	1.429
C6	C5	1.528	1.530
C1	H1	1.100	1.090
C2	H2	1.100	1.090
O1	HO1	0.950	0.967
O2	HO2	0.950	0.967
C3	H3	1.100	1.090
O3	HO3	0.950	0.967
C4	H4	1.100	1.090
O4	HO4	0.950	0.967
C6	H61	1.100	1.090
C6	H62	1.100	1.090
O6	HO6	0.950	0.967

Bond Angles for 5GF

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	O5	C5	120.4	114.1
O5	C1	C2	116.4	109.4
O5	C1	O1	109.9	109.5
O5	C1	H1	106.1	109.5
O5	C5	F	107.9	109.5
O5	C5	C4	111.1	109.4
O5	C5	C6	110.0	109.5
C2	C1	O1	111.5	109.5
C1	C2	O2	111.6	109.5
C1	C2	C3	113.8	109.2
C2	C1	H1	105.0	109.5
C1	C2	H2	106.7	109.5
O1	C1	H1	107.4	109.5
C1	O1	HO1	109.5	114.0
F	C5	C4	109.5	109.5
F	C5	C6	107.1	109.5
O2	C2	C3	109.5	109.5
O2	C2	H2	108.0	109.5
C2	O2	HO2	109.5	113.9
C2	C3	O3	109.7	109.6
C2	C3	C4	108.1	109.0
C3	C2	H2	106.9	109.6
C2	C3	H3	109.2	109.6
O3	C3	C4	110.2	109.5
O3	C3	H3	110.4	109.6
C3	O3	HO3	109.5	114.0
C3	C4	O4	109.9	109.5
C3	C4	C5	107.9	109.2
C4	C3	H3	109.2	109.6
C3	C4	H4	109.0	109.5
O4	C4	C5	111.1	109.5
O4	C4	H4	110.1	109.5
C4	O4	HO4	109.5	114.0
C4	C5	C6	111.0	109.5
C5	C4	H4	108.8	109.6
O6	C6	C5	110.6	109.5
O6	C6	H61	109.2	109.5
O6	C6	H62	109.2	109.5
C6	O6	HO6	109.5	114.0
C5	C6	H61	109.2	109.5
C5	C6	H62	109.2	109.4
H61	C6	H62	109.5	109.5

Torsion Angles for 5GF

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	O5	C5	F	244.3	301.2
C1	O5	C5	C4	4.4	61.1
C1	O5	C5	C6	127.7	181.1
C2	C1	O5	O1	127.9	120.0
O5	C1	C2	O2	105.7	177.5
O5	C1	C2	C3	341.2	57.6
C2	C1	O5	H1	243.7	240.1
O5	C1	C2	H2	223.5	297.6
O1	C1	O5	H1	115.8	120.0
O5	C1	O1	HO1	180.0	300.0
C5	O5	C1	C2	33.9	298.9
C5	O5	C1	O1	266.0	178.9
C5	O5	C1	H1	150.2	58.8
F	C5	O5	C4	239.9	240.0
F	C5	O5	C6	116.6	120.1
C3	C4	C5	O5	303.9	302.4
O4	C4	C5	O5	183.4	182.5
C4	C5	O5	C6	236.7	240.0
O5	C5	C4	H4	62.0	62.3
O6	C6	C5	O5	299.6	300.0
O5	C5	C6	H61	179.4	180.0
O5	C5	C6	H62	59.7	60.0
C2	C1	O5	C5	33.9	298.9
O5	C1	C2	O1	232.8	240.0
O5	C1	C2	H1	116.9	119.9
O1	C1	C2	H1	244.1	240.0
C2	C1	O1	HO1	49.4	180.1
O2	C2	C1	C3	124.5	119.9
O2	C2	C1	H2	242.2	239.8
C1	C2	O2	HO2	180.0	60.0
C1	C2	C3	O3	209.1	183.2
C1	C2	C3	C4	329.3	303.0
C3	C2	C1	H2	117.7	120.0
C1	C2	C3	H3	88.1	62.9
O1	C1	O5	C5	266.0	178.9
O5	C1	O1	C2	130.6	120.0
O5	C1	O1	H1	245.1	240.0
O1	C1	C2	O2	232.8	297.5
O1	C1	C2	C3	108.3	177.6
C2	C1	O1	H1	114.4	120.0
O1	C1	C2	H2	350.6	57.6
O5	C5	F	C4	121.1	119.9
O5	C5	F	C6	241.5	240.0
C3	C4	C5	F	63.1	62.3
O4	C4	C5	F	302.5	302.5
C4	C5	F	C6	120.4	120.0
F	C5	C4	H4	181.1	182.3
O6	C6	C5	F	182.5	180.0
F	C5	C6	H61	62.3	59.9
F	C5	C6	H62	302.6	299.9
O2	C2	C1	O1	232.8	297.5
C1	C2	O2	C3	233.1	240.3
O2	C2	C1	H1	348.7	57.5
C1	C2	O2	H2	117.0	120.2
O2	C2	C3	O3	83.5	63.3
O2	C2	C3	C4	203.7	183.1
C3	C2	O2	H2	243.9	239.8
O2	C2	C3	H3	322.4	303.0
C3	C2	C1	O1	108.3	177.6
C1	C2	C3	O2	125.6	119.9
C3	C2	C1	H1	224.2	297.7
C1	C2	C3	H2	242.5	240.0
O2	C2	C3	H2	116.8	120.1
C3	C2	O2	HO2	306.9	179.7
O3	C3	C2	C4	239.8	240.2
O3	C3	C2	H3	121.1	120.2
C2	C3	O3	HO3	180.0	300.0
C2	C3	C4	O4	190.1	176.9
C2	C3	C4	C5	68.8	57.0
C4	C3	C2	H3	241.3	240.0
C2	C3	C4	H4	310.8	297.0
C2	C3	O3	C4	118.9	119.5
O3	C3	C2	H2	326.7	303.1
C2	C3	O3	H3	239.7	239.8
O3	C3	C4	O4	309.9	296.7
O3	C3	C4	C5	188.6	176.9
C4	C3	O3	H3	120.8	120.2
O3	C3	C4	H4	70.7	56.9
O5	C5	C4	C3	303.9	302.4
F	C5	C4	C3	63.1	62.3
C2	C3	C4	O3	240.1	240.1
C4	C3	C2	H2	86.9	63.0
C2	C3	C4	H3	118.7	119.9
O3	C3	C4	H3	238.6	239.8
C4	C3	O3	HO3	61.1	180.4
O4	C4	C3	C5	121.3	119.9
O4	C4	C3	H4	239.3	239.9
C3	C4	O4	HO4	180.0	60.0
C3	C4	C5	C6	181.2	182.4
C5	C4	C3	H4	117.9	120.0
O5	C5	C4	O4	183.4	182.5
F	C5	C4	O4	302.5	302.5
C3	C4	O4	C5	240.7	240.3
O4	C4	C3	H3	71.4	57.0
C3	C4	O4	H4	120.0	120.1
O4	C4	C5	C6	60.6	62.5
C5	C4	O4	H4	239.4	239.8
O5	C5	C4	F	240.8	240.0
O5	C5	C4	C6	122.8	120.0
F	C5	C4	C6	241.9	239.9
C3	C4	C5	O4	120.6	119.9
C5	C4	C3	H3	310.1	297.1
C3	C4	C5	H4	241.9	240.0
O4	C4	C5	H4	121.4	120.2
C5	C4	O4	HO4	299.4	179.7
O6	C6	C5	C4	62.9	59.9
C4	C5	C6	H61	302.7	299.9
C4	C5	C6	H62	183.1	179.9
O5	C5	C6	O6	299.6	300.0
F	C5	C6	O6	182.5	180.0
C4	C5	C6	O6	62.9	59.9
C5	C6	O6	H61	239.8	240.0
C5	C6	O6	H62	120.2	119.9
H61	C6	O6	H62	240.3	239.9
O5	C5	C6	F	117.1	120.0
O5	C5	C6	C4	236.6	240.1
F	C5	C6	C4	119.5	120.0
C6	C5	C4	H4	299.2	302.4
O6	C6	C5	H61	120.2	120.0
O6	C6	C5	H62	239.8	240.0
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	119.6	120.0
H1	C1	O5	C5	150.2	58.8
O5	C1	H1	C2	236.2	240.1
O5	C1	H1	O1	117.5	120.1
C2	C1	H1	O1	241.3	240.0
H1	C1	C2	O2	348.7	57.5
H1	C1	C2	C3	224.2	297.7
H1	C1	C2	H2	106.5	177.7
H1	C1	O1	HO1	294.9	60.1
H2	C2	C1	O1	350.6	57.6
C1	C2	H2	O2	239.9	239.8
C1	C2	H2	C3	122.1	119.8
H2	C2	C1	H1	106.5	177.7
O2	C2	H2	C3	242.2	239.9
H2	C2	O2	HO2	63.0	299.8
H2	C2	C3	O3	326.7	303.1
H2	C2	C3	C4	86.9	63.0
H2	C2	C3	H3	205.6	182.9
HO1	O1	C1	H1	294.9	60.1
HO2	O2	C2	C3	306.9	179.7
HO2	O2	C2	H2	63.0	299.8
C2	C3	H3	O3	120.6	120.2
C2	C3	H3	C4	242.0	240.4
H3	C3	C2	H2	205.6	182.9
O3	C3	H3	C4	121.4	120.2
H3	C3	O3	HO3	300.3	60.2
H3	C3	C4	O4	71.4	57.0
H3	C3	C4	C5	310.1	297.1
H3	C3	C4	H4	192.1	177.1
HO3	O3	C3	C4	61.1	180.4
HO3	O3	C3	H3	300.3	60.2
C3	C4	H4	O4	239.4	239.9
C3	C4	H4	C5	117.4	119.7
H4	C4	C3	H3	192.1	177.1
O4	C4	H4	C5	238.0	239.8
H4	C4	O4	HO4	60.0	299.9
H4	C4	C5	C6	299.2	302.4
HO4	O4	C4	C5	299.4	179.7
HO4	O4	C4	H4	60.0	299.9
O6	C6	H61	C5	238.9	240.0
O6	C6	H61	H62	119.5	120.0
H61	C6	O6	HO6	300.2	300.0
C5	C6	H61	H62	240.5	240.0
O6	C6	H62	C5	121.1	120.0
O6	C6	H62	H61	240.5	239.9
H62	C6	O6	HO6	59.8	60.0
C5	C6	H62	H61	119.4	120.0
HO6	O6	C6	C5	180.0	180.0
HO6	O6	C6	H61	300.2	300.0
HO6	O6	C6	H62	59.8	60.0