Atom Nomenclature for 5FW

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 5FW

Atom Name (V3) Atom Name (V2)
CAI CAI
CAG CAG
CAJ CAJ
NAD NAD
CAF CAF
CAE CAE
OAA OAA
CAH CAH
CAK CAK
CAL CAL
CAN CAN
CAO CAO
OAC OAC
CAM CAM
OAB OAB
HAI1 HAI1
HAI2 HAI2
HAI3 HAI3
HAG HAG
HAJ1 HAJ1
HAJ2 HAJ2
HAJ3 HAJ3
HAD HAD
HAF1 HAF1
HAF2 HAF2
HAE HAE
HAA HAA
HAK HAK
HAL HAL
HAN HAN
HAC HAC
HAB HAB