Atom Nomenclature for 5FV

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 5FV

Atom Name (V3) Atom Name (V2)
C26 C1
C05 C2
C06 C3
C01 C4
O01 O1
C02 C5
C03 C6
C04 C7
C07 C8
C08 C9
C10 C10
C11 C11
C12 C12
C13 C13
O02 O2
C14 C14
C15 C15
C25 C16
C09 C17
S02 S1
O06 O3
C16 C18
C17 C19
C18 C20
S01 S2
O04 O4
O05 O5
O03 O6
C19 C21
C20 C22
C21 C23
C22 C24
C23 C25
C24 C26
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H17 H17
H18 H18
H19 H19
H20 H20
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27