PDB Chemical Component 5FN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5FN
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
F1 |
C5 |
1.328 |
1.399 |
C5 |
C6 |
1.535 |
1.529 |
C5 |
C4 |
1.521 |
1.532 |
C5 |
O23 |
1.448 |
1.424 |
C6 |
O24 |
1.446 |
1.429 |
C4 |
O22 |
1.431 |
1.429 |
C4 |
C3 |
1.544 |
1.525 |
C3 |
O21 |
1.443 |
1.429 |
C3 |
C2 |
1.529 |
1.518 |
O23 |
C1 |
1.435 |
1.401 |
C1 |
O1 |
1.447 |
1.439 |
C1 |
C2 |
1.520 |
1.530 |
O1 |
C7 |
1.442 |
1.349 |
C7 |
C9 |
1.509 |
1.507 |
C7 |
N1 |
1.330 |
1.288 |
N1 |
C2 |
1.462 |
1.485 |
C6 |
H61C |
1.100 |
1.091 |
C6 |
H62C |
1.100 |
1.089 |
C4 |
H4 |
1.100 |
1.089 |
O24 |
H24 |
0.950 |
0.968 |
O22 |
H22 |
0.950 |
0.966 |
C3 |
H3 |
1.100 |
1.090 |
O21 |
H21 |
0.950 |
0.968 |
C2 |
H2 |
1.100 |
1.091 |
C1 |
H1 |
1.100 |
1.090 |
C9 |
H91C |
1.100 |
1.090 |
C9 |
H92C |
1.100 |
1.090 |
C9 |
H93C |
1.100 |
1.090 |
Bond Angles for 5FN
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
F1 |
C5 |
C6 |
109.1 |
109.7 |
F1 |
C5 |
C4 |
108.1 |
109.7 |
F1 |
C5 |
O23 |
108.4 |
109.7 |
C6 |
C5 |
C4 |
112.7 |
109.7 |
C6 |
C5 |
O23 |
109.2 |
109.8 |
C5 |
C6 |
O24 |
111.4 |
109.4 |
C5 |
C6 |
H61C |
108.8 |
109.5 |
C5 |
C6 |
H62C |
108.4 |
109.5 |
C4 |
C5 |
O23 |
109.4 |
108.2 |
C5 |
C4 |
O22 |
107.0 |
109.6 |
C5 |
C4 |
C3 |
108.6 |
108.4 |
C5 |
C4 |
H4 |
112.6 |
109.7 |
C5 |
O23 |
C1 |
119.6 |
117.9 |
O24 |
C6 |
H61C |
108.9 |
109.4 |
O24 |
C6 |
H62C |
108.4 |
109.5 |
C6 |
O24 |
H24 |
109.5 |
114.0 |
O22 |
C4 |
C3 |
112.0 |
109.6 |
O22 |
C4 |
H4 |
109.1 |
109.6 |
C4 |
O22 |
H22 |
109.5 |
114.0 |
C4 |
C3 |
O21 |
112.9 |
109.0 |
C4 |
C3 |
C2 |
111.8 |
111.9 |
C3 |
C4 |
H4 |
107.6 |
109.8 |
C4 |
C3 |
H3 |
105.2 |
109.0 |
O21 |
C3 |
C2 |
108.9 |
109.0 |
O21 |
C3 |
H3 |
108.3 |
108.9 |
C3 |
O21 |
H21 |
109.5 |
114.0 |
C3 |
C2 |
C1 |
112.3 |
113.8 |
C3 |
C2 |
N1 |
111.3 |
108.3 |
C2 |
C3 |
H3 |
109.6 |
108.9 |
C3 |
C2 |
H2 |
103.9 |
110.8 |
O23 |
C1 |
O1 |
113.2 |
112.4 |
O23 |
C1 |
C2 |
116.3 |
116.2 |
O23 |
C1 |
H1 |
100.7 |
109.0 |
O1 |
C1 |
C2 |
106.1 |
101.9 |
C1 |
O1 |
C7 |
104.1 |
106.7 |
O1 |
C1 |
H1 |
112.0 |
108.8 |
C1 |
C2 |
N1 |
100.5 |
101.2 |
C1 |
C2 |
H2 |
114.1 |
110.8 |
C2 |
C1 |
H1 |
108.6 |
108.1 |
O1 |
C7 |
C9 |
125.4 |
123.0 |
O1 |
C7 |
N1 |
110.9 |
114.0 |
C9 |
C7 |
N1 |
123.7 |
123.0 |
C7 |
C9 |
H91C |
109.5 |
109.5 |
C7 |
C9 |
H92C |
109.4 |
109.5 |
C7 |
C9 |
H93C |
109.4 |
109.5 |
C7 |
N1 |
C2 |
111.0 |
108.2 |
N1 |
C2 |
H2 |
115.1 |
111.5 |
H61C |
C6 |
H62C |
111.0 |
109.5 |
H91C |
C9 |
H92C |
109.5 |
109.5 |
H91C |
C9 |
H93C |
109.4 |
109.4 |
H92C |
C9 |
H93C |
109.5 |
109.4 |
Torsion Angles for 5FN
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C5 |
F1 |
C4 |
237.2 |
239.4 |
C6 |
C5 |
F1 |
O23 |
118.7 |
120.6 |
F1 |
C5 |
C6 |
O24 |
184.1 |
180.1 |
F1 |
C5 |
C6 |
H61C |
304.1 |
300.0 |
F1 |
C5 |
C6 |
H62C |
64.9 |
60.0 |
C4 |
C5 |
F1 |
O23 |
241.5 |
241.3 |
F1 |
C5 |
C4 |
O22 |
297.7 |
297.1 |
F1 |
C5 |
C4 |
C3 |
58.8 |
56.7 |
F1 |
C5 |
C4 |
H4 |
177.8 |
176.6 |
F1 |
C5 |
O23 |
C1 |
293.3 |
298.0 |
F1 |
C5 |
C6 |
C4 |
120.0 |
120.7 |
F1 |
C5 |
C6 |
O23 |
241.7 |
239.4 |
C4 |
C5 |
C6 |
O23 |
121.7 |
118.8 |
C6 |
C5 |
C4 |
O22 |
58.3 |
57.7 |
C6 |
C5 |
C4 |
C3 |
179.4 |
177.4 |
C6 |
C5 |
C4 |
H4 |
298.4 |
297.3 |
C6 |
C5 |
O23 |
C1 |
174.6 |
177.3 |
O24 |
C6 |
C5 |
H61C |
240.0 |
240.1 |
O24 |
C6 |
C5 |
H62C |
119.2 |
120.0 |
C5 |
C6 |
O24 |
H24 |
239.3 |
180.0 |
H61C |
C6 |
C5 |
H62C |
239.2 |
240.0 |
F1 |
C5 |
C4 |
C6 |
239.4 |
239.4 |
F1 |
C5 |
C4 |
O23 |
117.8 |
119.6 |
C6 |
C5 |
C4 |
O23 |
238.4 |
240.3 |
C4 |
C5 |
C6 |
O24 |
64.1 |
59.4 |
C4 |
C5 |
C6 |
H61C |
184.1 |
179.3 |
C4 |
C5 |
C6 |
H62C |
304.9 |
299.4 |
C4 |
C5 |
O23 |
C1 |
51.0 |
57.6 |
O22 |
C4 |
C5 |
C3 |
238.9 |
240.3 |
O22 |
C4 |
C5 |
H4 |
119.9 |
120.5 |
C5 |
C4 |
O22 |
H22 |
82.8 |
300.0 |
C5 |
C4 |
C3 |
O21 |
182.6 |
176.7 |
C5 |
C4 |
C3 |
C2 |
59.4 |
56.2 |
C3 |
C4 |
C5 |
H4 |
241.0 |
240.1 |
C5 |
C4 |
C3 |
H3 |
300.5 |
295.6 |
F1 |
C5 |
O23 |
C6 |
118.7 |
120.6 |
F1 |
C5 |
O23 |
C4 |
242.4 |
240.3 |
C6 |
C5 |
O23 |
C4 |
123.7 |
119.7 |
O23 |
C5 |
C6 |
O24 |
302.4 |
300.6 |
O23 |
C5 |
C6 |
H61C |
62.4 |
60.6 |
O23 |
C5 |
C6 |
H62C |
183.2 |
180.6 |
O23 |
C5 |
C4 |
O22 |
179.9 |
177.5 |
O23 |
C5 |
C4 |
C3 |
301.0 |
297.1 |
O23 |
C5 |
C4 |
H4 |
60.0 |
57.0 |
C5 |
O23 |
C1 |
O1 |
83.9 |
74.4 |
C5 |
O23 |
C1 |
C2 |
320.7 |
317.5 |
C5 |
O23 |
C1 |
H1 |
203.6 |
195.1 |
O24 |
C6 |
C5 |
C4 |
64.1 |
59.4 |
O24 |
C6 |
C5 |
O23 |
302.4 |
300.6 |
C5 |
C6 |
O24 |
H61C |
120.0 |
120.0 |
C5 |
C6 |
O24 |
H62C |
240.8 |
240.0 |
H61C |
C6 |
O24 |
H62C |
120.8 |
120.0 |
O22 |
C4 |
C5 |
O23 |
179.9 |
177.5 |
C5 |
C4 |
O22 |
C3 |
118.9 |
118.9 |
C5 |
C4 |
O22 |
H4 |
237.9 |
239.5 |
O22 |
C4 |
C3 |
O21 |
300.5 |
296.4 |
O22 |
C4 |
C3 |
C2 |
177.3 |
175.8 |
C3 |
C4 |
O22 |
H4 |
119.0 |
120.6 |
O22 |
C4 |
C3 |
H3 |
58.5 |
55.3 |
C3 |
C4 |
C5 |
O23 |
301.0 |
297.1 |
C5 |
C4 |
C3 |
O22 |
242.1 |
240.3 |
C5 |
C4 |
C3 |
H4 |
122.1 |
119.8 |
O22 |
C4 |
C3 |
H4 |
240.1 |
239.5 |
C3 |
C4 |
O22 |
H22 |
323.9 |
181.0 |
O21 |
C3 |
C4 |
C2 |
123.2 |
120.6 |
O21 |
C3 |
C4 |
H3 |
242.0 |
241.2 |
C4 |
C3 |
O21 |
H21 |
17.4 |
60.0 |
C4 |
C3 |
C2 |
C1 |
313.3 |
319.3 |
C4 |
C3 |
C2 |
N1 |
201.5 |
207.6 |
C2 |
C3 |
C4 |
H3 |
118.9 |
120.6 |
C4 |
C3 |
C2 |
H2 |
77.1 |
85.0 |
C4 |
C3 |
O21 |
C2 |
235.2 |
237.6 |
O21 |
C3 |
C4 |
H4 |
60.5 |
56.9 |
C4 |
C3 |
O21 |
H3 |
116.1 |
118.9 |
O21 |
C3 |
C2 |
C1 |
187.8 |
198.7 |
O21 |
C3 |
C2 |
N1 |
76.1 |
87.0 |
C2 |
C3 |
O21 |
H3 |
240.9 |
241.3 |
O21 |
C3 |
C2 |
H2 |
311.7 |
324.4 |
C4 |
C3 |
C2 |
O21 |
125.5 |
120.6 |
C2 |
C3 |
C4 |
H4 |
297.3 |
296.3 |
C4 |
C3 |
C2 |
H3 |
243.8 |
239.4 |
O21 |
C3 |
C2 |
H3 |
118.3 |
118.7 |
C2 |
C3 |
O21 |
H21 |
142.2 |
182.4 |
O23 |
C1 |
C2 |
C3 |
35.5 |
32.4 |
O1 |
C1 |
C2 |
C3 |
268.7 |
269.8 |
C1 |
C2 |
C3 |
N1 |
111.7 |
111.7 |
C1 |
C2 |
C3 |
H2 |
236.2 |
234.3 |
C3 |
C2 |
C1 |
H1 |
148.2 |
155.2 |
C7 |
N1 |
C2 |
C3 |
99.2 |
103.2 |
N1 |
C2 |
C3 |
H2 |
124.4 |
122.6 |
C3 |
C2 |
C1 |
O23 |
35.5 |
32.4 |
O1 |
C1 |
O23 |
C2 |
123.1 |
116.9 |
O23 |
C1 |
O1 |
C7 |
206.6 |
207.9 |
O1 |
C1 |
O23 |
H1 |
240.3 |
239.3 |
O23 |
C1 |
C2 |
N1 |
153.8 |
148.4 |
O23 |
C1 |
C2 |
H2 |
277.6 |
266.7 |
C2 |
C1 |
O23 |
H1 |
117.2 |
122.3 |
C3 |
C2 |
C1 |
O1 |
268.7 |
269.8 |
O23 |
C1 |
O1 |
C2 |
231.4 |
234.8 |
O23 |
C1 |
O1 |
H1 |
113.0 |
120.8 |
O1 |
C1 |
C2 |
N1 |
27.0 |
25.7 |
O1 |
C1 |
C2 |
H2 |
150.8 |
144.1 |
C2 |
C1 |
O1 |
H1 |
241.7 |
246.0 |
C1 |
O1 |
C7 |
C9 |
193.7 |
198.2 |
C1 |
O1 |
C7 |
N1 |
12.8 |
18.1 |
C3 |
C2 |
C1 |
N1 |
241.7 |
244.1 |
C1 |
C2 |
C3 |
H3 |
69.5 |
80.0 |
C3 |
C2 |
C1 |
H2 |
117.9 |
125.7 |
O23 |
C1 |
C2 |
O1 |
126.8 |
122.6 |
O23 |
C1 |
C2 |
H1 |
247.3 |
237.2 |
C2 |
C1 |
O1 |
C7 |
335.2 |
333.1 |
O1 |
C1 |
C2 |
H1 |
120.5 |
114.6 |
C7 |
N1 |
C2 |
C1 |
340.1 |
343.3 |
N1 |
C2 |
C1 |
H2 |
236.3 |
241.6 |
C7 |
O1 |
C1 |
C2 |
335.2 |
333.1 |
C7 |
O1 |
C1 |
H1 |
93.6 |
87.1 |
C9 |
C7 |
O1 |
N1 |
181.0 |
180.1 |
O1 |
C7 |
C9 |
H91C |
76.3 |
359.9 |
O1 |
C7 |
C9 |
H92C |
196.3 |
120.0 |
O1 |
C7 |
C9 |
H93C |
316.3 |
239.9 |
O1 |
C7 |
N1 |
C2 |
5.3 |
0.1 |
O1 |
C7 |
C9 |
N1 |
178.9 |
179.9 |
C9 |
C7 |
N1 |
C2 |
184.4 |
180.0 |
H91C |
C9 |
C7 |
H92C |
240.0 |
239.9 |
H91C |
C9 |
C7 |
H93C |
120.0 |
119.9 |
H92C |
C9 |
C7 |
H93C |
240.0 |
240.0 |
C3 |
C2 |
N1 |
C7 |
99.2 |
103.2 |
C1 |
C2 |
N1 |
C7 |
340.1 |
343.3 |
O1 |
C7 |
N1 |
C9 |
180.9 |
180.1 |
N1 |
C7 |
C9 |
H91C |
257.4 |
180.0 |
N1 |
C7 |
C9 |
H92C |
17.4 |
300.1 |
N1 |
C7 |
C9 |
H93C |
137.4 |
60.1 |
C7 |
N1 |
C2 |
H2 |
217.0 |
225.3 |
C3 |
C2 |
N1 |
C1 |
119.1 |
119.9 |
N1 |
C2 |
C3 |
H3 |
317.7 |
328.3 |
C3 |
C2 |
N1 |
H2 |
242.2 |
237.8 |
C1 |
C2 |
N1 |
H2 |
123.1 |
117.9 |
N1 |
C2 |
C1 |
H1 |
266.5 |
271.2 |
H61C |
C6 |
C5 |
C4 |
184.1 |
179.3 |
H61C |
C6 |
C5 |
O23 |
62.4 |
60.6 |
C5 |
C6 |
H61C |
O24 |
238.4 |
240.1 |
C5 |
C6 |
H61C |
H62C |
119.2 |
120.0 |
O24 |
C6 |
H61C |
H62C |
240.8 |
240.0 |
H61C |
C6 |
O24 |
H24 |
119.3 |
60.0 |
H62C |
C6 |
C5 |
C4 |
304.9 |
299.4 |
H62C |
C6 |
C5 |
O23 |
183.2 |
180.6 |
C5 |
C6 |
H62C |
O24 |
121.0 |
120.0 |
C5 |
C6 |
H62C |
H61C |
240.5 |
240.0 |
O24 |
C6 |
H62C |
H61C |
119.5 |
120.0 |
H62C |
C6 |
O24 |
H24 |
358.5 |
300.0 |
H4 |
C4 |
C5 |
O23 |
60.0 |
57.0 |
C5 |
C4 |
H4 |
O22 |
118.6 |
120.5 |
C5 |
C4 |
H4 |
C3 |
240.4 |
240.9 |
O22 |
C4 |
H4 |
C3 |
121.8 |
120.5 |
H4 |
C4 |
O22 |
H22 |
204.9 |
60.5 |
H4 |
C4 |
C3 |
O21 |
60.5 |
56.9 |
H4 |
C4 |
C3 |
C2 |
297.3 |
296.3 |
H4 |
C4 |
C3 |
H3 |
178.4 |
175.8 |
H24 |
O24 |
C6 |
H61C |
119.3 |
60.0 |
H24 |
O24 |
C6 |
H62C |
358.5 |
300.0 |
H22 |
O22 |
C4 |
C3 |
323.9 |
181.0 |
H22 |
O22 |
C4 |
H4 |
204.9 |
60.5 |
C4 |
C3 |
H3 |
O21 |
239.0 |
241.1 |
C4 |
C3 |
H3 |
C2 |
120.3 |
122.4 |
H3 |
C3 |
C4 |
H4 |
178.4 |
175.8 |
O21 |
C3 |
H3 |
C2 |
241.3 |
241.3 |
H3 |
C3 |
O21 |
H21 |
261.3 |
301.1 |
H3 |
C3 |
C2 |
C1 |
69.5 |
80.0 |
H3 |
C3 |
C2 |
N1 |
317.7 |
328.3 |
H3 |
C3 |
C2 |
H2 |
193.3 |
205.7 |
H21 |
O21 |
C3 |
C2 |
142.2 |
182.4 |
H21 |
O21 |
C3 |
H3 |
261.3 |
301.1 |
C3 |
C2 |
H2 |
C1 |
237.4 |
232.7 |
C3 |
C2 |
H2 |
N1 |
121.9 |
120.7 |
H2 |
C2 |
C3 |
H3 |
193.3 |
205.7 |
C1 |
C2 |
H2 |
N1 |
244.6 |
248.0 |
H2 |
C2 |
C1 |
H1 |
30.3 |
29.5 |
O23 |
C1 |
H1 |
O1 |
239.4 |
237.1 |
O23 |
C1 |
H1 |
C2 |
122.6 |
127.1 |
O1 |
C1 |
H1 |
C2 |
243.2 |
250.1 |
H1 |
C1 |
O1 |
C7 |
93.6 |
87.1 |
H1 |
C1 |
C2 |
N1 |
266.5 |
271.2 |
H1 |
C1 |
C2 |
H2 |
30.3 |
29.5 |
H91C |
C9 |
C7 |
N1 |
257.4 |
180.0 |
C7 |
C9 |
H91C |
H92C |
120.0 |
120.1 |
C7 |
C9 |
H91C |
H93C |
240.0 |
240.0 |
H92C |
C9 |
H91C |
H93C |
120.0 |
120.0 |
H92C |
C9 |
C7 |
N1 |
17.4 |
300.1 |
C7 |
C9 |
H92C |
H91C |
240.0 |
239.9 |
C7 |
C9 |
H92C |
H93C |
120.0 |
120.0 |
H91C |
C9 |
H92C |
H93C |
240.0 |
240.1 |
H93C |
C9 |
C7 |
N1 |
137.4 |
60.1 |
C7 |
C9 |
H93C |
H91C |
120.0 |
120.0 |
C7 |
C9 |
H93C |
H92C |
240.0 |
240.0 |
H91C |
C9 |
H93C |
H92C |
120.0 |
120.0 |