Atom Nomenclature for 5FN

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 5FN

Atom Name (V3) Atom Name (V2)
F1 F1
C5 C5
C6 C6
O24 O24
C4 C4
O22 O22
C3 C3
O21 O21
O23 O23
C1 C1
O1 O1
C7 C7
C9 C9
N1 N1
C2 C2
H61C H61C
H62C H62C
H4 H4
H24 H24
H22 H22
H3 H3
H21 H21
H2 H2
H1 H1
H91C H91C
H92C H92C
H93C H93C