PDB Chemical Component 5FJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5FJ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N7 |
N6 |
1.424 |
1.286 |
| N7 |
C8 |
1.272 |
1.313 |
| N6 |
C5 |
1.270 |
1.304 |
| C11 |
N13 |
1.344 |
1.317 |
| C11 |
C10 |
1.385 |
1.394 |
| N13 |
C14 |
1.352 |
1.325 |
| C8 |
C10 |
1.502 |
1.477 |
| C8 |
O9 |
1.324 |
1.348 |
| C31 |
C28 |
1.549 |
1.531 |
| C31 |
N19 |
1.460 |
1.468 |
| C28 |
C26 |
1.543 |
1.532 |
| C5 |
O9 |
1.326 |
1.345 |
| C5 |
C2 |
1.496 |
1.506 |
| C10 |
C17 |
1.398 |
1.402 |
| F3 |
C2 |
1.338 |
1.399 |
| C14 |
N19 |
1.357 |
1.387 |
| C14 |
C15 |
1.385 |
1.392 |
| C2 |
F1 |
1.358 |
1.399 |
| C2 |
F4 |
1.364 |
1.399 |
| C35 |
N37 |
1.252 |
1.309 |
| C35 |
N34 |
1.303 |
1.346 |
| N19 |
C20 |
1.470 |
1.468 |
| N37 |
C38 |
1.421 |
1.333 |
| C26 |
N34 |
1.473 |
1.464 |
| C26 |
C23 |
1.551 |
1.531 |
| N34 |
C40 |
1.333 |
1.382 |
| C17 |
C15 |
1.388 |
1.381 |
| C38 |
C40 |
1.337 |
1.367 |
| C40 |
C41 |
1.486 |
1.468 |
| C20 |
C23 |
1.550 |
1.530 |
| C41 |
N43 |
1.356 |
1.348 |
| C41 |
O42 |
1.214 |
1.216 |
| C50 |
C45 |
1.554 |
1.530 |
| N43 |
C45 |
1.477 |
1.465 |
| C46 |
C45 |
1.562 |
1.530 |
| C45 |
C54 |
1.560 |
1.530 |
| C46 |
H1 |
1.100 |
1.091 |
| C46 |
H2 |
1.100 |
1.090 |
| C46 |
H3 |
1.100 |
1.089 |
| C50 |
H4 |
1.100 |
1.091 |
| C50 |
H5 |
1.100 |
1.090 |
| C50 |
H6 |
1.100 |
1.090 |
| C11 |
H7 |
1.080 |
1.080 |
| C15 |
H8 |
1.080 |
1.080 |
| C17 |
H9 |
1.080 |
1.080 |
| C20 |
H10 |
1.100 |
1.090 |
| C20 |
H11 |
1.100 |
1.091 |
| C23 |
H12 |
1.100 |
1.090 |
| C23 |
H13 |
1.100 |
1.091 |
| C26 |
H14 |
1.100 |
1.090 |
| C28 |
H15 |
1.100 |
1.090 |
| C28 |
H16 |
1.100 |
1.090 |
| C31 |
H17 |
1.099 |
1.090 |
| C31 |
H18 |
1.100 |
1.090 |
| C35 |
H19 |
1.081 |
1.080 |
| C38 |
H20 |
1.080 |
1.080 |
| N43 |
H21 |
1.000 |
0.970 |
| C54 |
H22 |
1.100 |
1.091 |
| C54 |
H23 |
1.100 |
1.090 |
| C54 |
H24 |
1.100 |
1.090 |
Bond Angles for 5FJ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N7 |
C8 |
C10 |
125.4 |
126.4 |
| N7 |
C8 |
O9 |
114.7 |
107.2 |
| N6 |
C5 |
O9 |
114.6 |
107.6 |
| C10 |
C11 |
N13 |
121.5 |
120.7 |
| C11 |
N13 |
C14 |
121.3 |
121.8 |
| N13 |
C11 |
H7 |
119.3 |
119.7 |
| C11 |
C10 |
C8 |
121.9 |
120.5 |
| C11 |
C10 |
C17 |
118.7 |
119.0 |
| C10 |
C11 |
H7 |
119.3 |
119.7 |
| N13 |
C14 |
N19 |
118.3 |
119.6 |
| O9 |
C8 |
C10 |
119.8 |
126.4 |
| C5 |
O9 |
C8 |
101.9 |
106.4 |
| C31 |
C28 |
H15 |
110.0 |
109.5 |
| C31 |
C28 |
H16 |
110.0 |
109.6 |
| C28 |
C26 |
N34 |
112.7 |
109.5 |
| C28 |
C26 |
H14 |
106.9 |
109.6 |
| C10 |
C17 |
H9 |
120.8 |
120.8 |
| F3 |
C2 |
F4 |
108.5 |
109.5 |
| C15 |
C14 |
N19 |
122.5 |
119.6 |
| C14 |
N19 |
C20 |
121.5 |
111.0 |
| C14 |
C15 |
H8 |
119.5 |
120.4 |
| F1 |
C2 |
F4 |
109.3 |
109.4 |
| C35 |
N37 |
C38 |
109.7 |
109.7 |
| N37 |
C35 |
H19 |
125.2 |
125.5 |
| C35 |
N34 |
C40 |
109.1 |
107.0 |
| N19 |
C20 |
H10 |
109.7 |
109.5 |
| N19 |
C20 |
H11 |
109.7 |
109.5 |
| N37 |
C38 |
C40 |
103.1 |
107.8 |
| N37 |
C38 |
H20 |
128.5 |
126.2 |
| C26 |
N34 |
C40 |
125.8 |
126.5 |
| N34 |
C26 |
H14 |
107.7 |
109.5 |
| C26 |
C23 |
H12 |
108.9 |
109.5 |
| C26 |
C23 |
H13 |
108.9 |
109.6 |
| N34 |
C40 |
C38 |
108.6 |
106.3 |
| C17 |
C15 |
H8 |
119.5 |
120.3 |
| C40 |
C38 |
H20 |
128.4 |
126.1 |
| C40 |
C41 |
N43 |
119.6 |
120.0 |
| C40 |
C41 |
O42 |
120.1 |
120.0 |
| C23 |
C20 |
H10 |
109.7 |
109.5 |
| C23 |
C20 |
H11 |
109.7 |
109.4 |
| C20 |
C23 |
H12 |
108.9 |
109.5 |
| C20 |
C23 |
H13 |
108.9 |
109.5 |
| O42 |
C41 |
N43 |
120.3 |
120.0 |
| C41 |
N43 |
C45 |
124.7 |
120.0 |
| C41 |
N43 |
H21 |
117.6 |
120.0 |
| C50 |
C45 |
C54 |
109.5 |
109.5 |
| N43 |
C45 |
C54 |
113.0 |
109.5 |
| C46 |
C45 |
C54 |
107.1 |
109.5 |
| C45 |
C54 |
H22 |
109.5 |
109.4 |
| C45 |
C54 |
H23 |
109.4 |
109.5 |
| C45 |
C54 |
H24 |
109.4 |
109.5 |
| H1 |
C46 |
H2 |
109.5 |
109.5 |
| H1 |
C46 |
H3 |
109.5 |
109.5 |
| H2 |
C46 |
H3 |
109.5 |
109.6 |
| H4 |
C50 |
H5 |
109.4 |
109.4 |
| H4 |
C50 |
H6 |
109.5 |
109.5 |
| H5 |
C50 |
H6 |
109.4 |
109.5 |
| H10 |
C20 |
H11 |
109.5 |
109.4 |
| H12 |
C23 |
H13 |
109.5 |
109.4 |
| H15 |
C28 |
H16 |
109.4 |
109.5 |
| H17 |
C31 |
H18 |
109.5 |
109.5 |
| H22 |
C54 |
H23 |
109.5 |
109.5 |
| H22 |
C54 |
H24 |
109.4 |
109.4 |
| H23 |
C54 |
H24 |
109.5 |
109.5 |
Torsion Angles for 5FJ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N7 |
N6 |
C5 |
O9 |
0.5 |
0.0 |
| C11 |
C10 |
C8 |
N7 |
18.4 |
180.1 |
| O9 |
C8 |
N7 |
C10 |
182.1 |
180.0 |
| C5 |
O9 |
C8 |
N7 |
359.2 |
0.0 |
| N6 |
C5 |
O9 |
C8 |
0.1 |
360.0 |
| N13 |
C11 |
C10 |
C8 |
180.7 |
180.0 |
| N13 |
C11 |
C10 |
C17 |
0.1 |
0.1 |
| C10 |
C11 |
N13 |
H7 |
180.0 |
179.7 |
| C11 |
N13 |
C14 |
N19 |
179.9 |
180.0 |
| N7 |
C8 |
C10 |
C11 |
18.4 |
180.1 |
| C10 |
C11 |
N13 |
C14 |
0.3 |
360.0 |
| N13 |
C11 |
C10 |
H7 |
180.0 |
180.3 |
| O9 |
C8 |
C10 |
C11 |
196.2 |
0.1 |
| C11 |
C10 |
C17 |
H9 |
179.7 |
180.0 |
| C14 |
N13 |
C11 |
H7 |
180.3 |
180.3 |
| C15 |
C14 |
N13 |
N19 |
179.7 |
180.0 |
| N13 |
C14 |
N19 |
C20 |
181.3 |
360.0 |
| N13 |
C14 |
C15 |
H8 |
180.2 |
180.1 |
| N7 |
C8 |
C10 |
O9 |
182.2 |
180.0 |
| C8 |
C10 |
C11 |
N13 |
180.7 |
180.0 |
| C11 |
C10 |
C8 |
C17 |
179.3 |
180.1 |
| C8 |
C10 |
C11 |
H7 |
0.8 |
359.6 |
| C5 |
O9 |
C8 |
C10 |
181.1 |
180.0 |
| C8 |
C10 |
C17 |
H9 |
359.0 |
0.1 |
| N7 |
C8 |
O9 |
C10 |
178.0 |
180.0 |
| C11 |
C10 |
C8 |
O9 |
196.2 |
0.1 |
| C31 |
C28 |
C26 |
N34 |
188.6 |
177.5 |
| C31 |
C28 |
C26 |
H14 |
306.8 |
297.7 |
| H15 |
C28 |
C31 |
H16 |
239.3 |
120.1 |
| N19 |
C31 |
C28 |
H15 |
61.0 |
180.9 |
| N19 |
C31 |
C28 |
H16 |
181.7 |
60.8 |
| C31 |
N19 |
C20 |
H10 |
68.2 |
178.2 |
| C31 |
N19 |
C20 |
H11 |
188.6 |
58.2 |
| C28 |
C26 |
N34 |
C40 |
144.7 |
125.3 |
| N34 |
C26 |
C28 |
H14 |
241.8 |
239.8 |
| C28 |
C26 |
C23 |
H12 |
60.1 |
182.3 |
| C28 |
C26 |
C23 |
H13 |
179.4 |
62.3 |
| N7 |
C8 |
O9 |
C5 |
359.2 |
0.0 |
| C17 |
C10 |
C11 |
N13 |
0.1 |
0.1 |
| C11 |
C10 |
C17 |
C8 |
180.6 |
179.9 |
| C17 |
C10 |
C11 |
H7 |
180.1 |
179.7 |
| C10 |
C17 |
C15 |
H8 |
180.2 |
180.0 |
| F1 |
C2 |
F3 |
F4 |
240.5 |
120.0 |
| N19 |
C14 |
C15 |
H8 |
359.8 |
0.0 |
| C14 |
N19 |
C20 |
H10 |
248.9 |
54.2 |
| C14 |
N19 |
C20 |
H11 |
9.2 |
294.2 |
| C11 |
N13 |
C14 |
C15 |
359.5 |
0.0 |
| N13 |
C14 |
C15 |
N19 |
180.3 |
180.0 |
| C15 |
C14 |
N19 |
C20 |
1.7 |
180.0 |
| C17 |
C15 |
C14 |
H8 |
180.0 |
179.9 |
| F3 |
C2 |
F1 |
F4 |
119.0 |
240.0 |
| N37 |
C35 |
N34 |
C40 |
359.8 |
0.3 |
| C35 |
N37 |
C38 |
C40 |
0.2 |
359.7 |
| C35 |
N37 |
C38 |
H20 |
180.2 |
180.0 |
| C26 |
N34 |
C35 |
C40 |
179.3 |
179.7 |
| C35 |
N34 |
C26 |
H14 |
207.8 |
185.5 |
| C35 |
N34 |
C40 |
C38 |
0.4 |
359.6 |
| C23 |
C20 |
N19 |
H10 |
240.1 |
120.0 |
| C23 |
C20 |
N19 |
H11 |
119.8 |
240.0 |
| N19 |
C20 |
C23 |
H12 |
292.0 |
179.2 |
| N19 |
C20 |
C23 |
H13 |
172.7 |
299.2 |
| H10 |
C20 |
N19 |
H11 |
239.7 |
120.0 |
| C38 |
N37 |
C35 |
H19 |
180.0 |
180.0 |
| N34 |
C40 |
C38 |
N37 |
359.6 |
0.4 |
| C40 |
C38 |
N37 |
H20 |
180.0 |
179.8 |
| C28 |
C26 |
N34 |
H14 |
117.7 |
120.2 |
| C35 |
N34 |
C26 |
C40 |
180.8 |
180.4 |
| N34 |
C26 |
C23 |
H12 |
293.8 |
62.5 |
| N34 |
C26 |
C23 |
H13 |
53.1 |
302.5 |
| C26 |
N34 |
C40 |
C38 |
181.1 |
179.9 |
| C26 |
C23 |
C20 |
H10 |
292.5 |
179.2 |
| C26 |
C23 |
C20 |
H11 |
172.2 |
299.1 |
| C20 |
C23 |
C26 |
H12 |
239.6 |
120.0 |
| C20 |
C23 |
C26 |
H13 |
120.3 |
240.0 |
| H12 |
C23 |
C26 |
H13 |
240.7 |
120.0 |
| N37 |
C38 |
C40 |
N34 |
359.6 |
0.4 |
| C40 |
N34 |
C26 |
H14 |
27.0 |
5.1 |
| N34 |
C40 |
C38 |
H20 |
179.6 |
180.2 |
| N34 |
C40 |
C41 |
N43 |
203.8 |
185.1 |
| N34 |
C40 |
C41 |
O42 |
24.2 |
5.1 |
| C11 |
C10 |
C17 |
C15 |
359.6 |
359.9 |
| C17 |
C15 |
C14 |
N19 |
179.8 |
180.0 |
| C14 |
C15 |
C17 |
H8 |
180.0 |
180.1 |
| N37 |
C38 |
C40 |
H20 |
180.0 |
180.2 |
| C38 |
C40 |
C41 |
N43 |
22.8 |
5.2 |
| C38 |
C40 |
C41 |
O42 |
203.3 |
185.2 |
| O42 |
C41 |
C40 |
N43 |
180.4 |
180.0 |
| C40 |
C41 |
N43 |
C45 |
179.7 |
175.1 |
| C40 |
C41 |
N43 |
H21 |
359.7 |
355.1 |
| C14 |
N19 |
C20 |
C23 |
129.1 |
174.2 |
| N19 |
C20 |
C23 |
H10 |
119.9 |
239.9 |
| N19 |
C20 |
C23 |
H11 |
240.2 |
120.0 |
| C26 |
C23 |
C20 |
H12 |
120.3 |
240.0 |
| C26 |
C23 |
C20 |
H13 |
239.7 |
120.0 |
| H10 |
C20 |
C23 |
H11 |
120.3 |
240.1 |
| H12 |
C23 |
C20 |
H13 |
119.3 |
240.0 |
| C40 |
C41 |
N43 |
O42 |
180.4 |
180.0 |
| C41 |
N43 |
C45 |
C54 |
60.5 |
60.0 |
| C40 |
C41 |
O42 |
N43 |
179.6 |
180.0 |
| O42 |
C41 |
N43 |
C45 |
359.2 |
355.1 |
| O42 |
C41 |
N43 |
H21 |
179.2 |
175.1 |
| C41 |
N43 |
C45 |
C50 |
295.9 |
300.0 |
| N43 |
C45 |
C50 |
C54 |
126.5 |
120.0 |
| C46 |
C45 |
C50 |
C54 |
244.8 |
240.0 |
| C50 |
C45 |
C54 |
H22 |
180.0 |
300.0 |
| C50 |
C45 |
C54 |
H23 |
300.0 |
60.0 |
| C50 |
C45 |
C54 |
H24 |
60.0 |
180.0 |
| C41 |
N43 |
C45 |
H21 |
180.0 |
180.0 |
| C50 |
C45 |
N43 |
C54 |
235.4 |
240.0 |
| C46 |
C45 |
N43 |
C54 |
118.6 |
120.0 |
| N43 |
C45 |
C54 |
H22 |
53.8 |
180.0 |
| N43 |
C45 |
C54 |
H23 |
173.8 |
300.0 |
| N43 |
C45 |
C54 |
H24 |
293.8 |
60.0 |
| C41 |
N43 |
C45 |
C46 |
179.1 |
180.0 |
| C50 |
C45 |
C46 |
C54 |
116.8 |
120.0 |
| N43 |
C45 |
C46 |
C54 |
237.8 |
240.0 |
| C46 |
C45 |
C54 |
H22 |
294.4 |
60.0 |
| C46 |
C45 |
C54 |
H23 |
54.4 |
180.0 |
| C46 |
C45 |
C54 |
H24 |
174.4 |
300.0 |
| H22 |
C54 |
C45 |
H23 |
240.0 |
240.0 |
| H22 |
C54 |
C45 |
H24 |
120.0 |
120.0 |
| H23 |
C54 |
C45 |
H24 |
240.0 |
240.0 |
| H1 |
C46 |
C45 |
C54 |
63.2 |
60.0 |
| H2 |
C46 |
H1 |
H3 |
120.0 |
120.1 |
| H2 |
C46 |
C45 |
C54 |
183.2 |
179.9 |
| H1 |
C46 |
H2 |
H3 |
240.0 |
239.9 |
| H3 |
C46 |
C45 |
C54 |
303.2 |
300.0 |
| H1 |
C46 |
H3 |
H2 |
120.1 |
120.0 |
| H4 |
C50 |
C45 |
C54 |
53.5 |
60.1 |
| H5 |
C50 |
H4 |
H6 |
119.9 |
120.0 |
| H5 |
C50 |
C45 |
C54 |
173.5 |
180.0 |
| H4 |
C50 |
H5 |
H6 |
240.1 |
240.0 |
| H6 |
C50 |
C45 |
C54 |
293.5 |
300.0 |
| H4 |
C50 |
H6 |
H5 |
119.9 |
120.0 |
| C10 |
C11 |
H7 |
N13 |
180.0 |
180.3 |
| H7 |
C11 |
N13 |
C14 |
180.3 |
180.3 |
| H7 |
C11 |
C10 |
C8 |
0.8 |
359.6 |
| H7 |
C11 |
C10 |
C17 |
180.1 |
179.7 |
| H8 |
C15 |
C14 |
N19 |
359.8 |
0.0 |
| H9 |
C17 |
C15 |
H8 |
0.2 |
359.9 |
| N19 |
C20 |
H10 |
H11 |
120.5 |
240.0 |
| C23 |
C20 |
H10 |
H11 |
239.5 |
119.9 |
| H10 |
C20 |
C23 |
H12 |
172.2 |
299.2 |
| H10 |
C20 |
C23 |
H13 |
52.8 |
59.2 |
| N19 |
C20 |
H11 |
H10 |
239.5 |
120.0 |
| C23 |
C20 |
H11 |
H10 |
120.5 |
240.1 |
| H11 |
C20 |
C23 |
H12 |
51.9 |
59.1 |
| H11 |
C20 |
C23 |
H13 |
292.5 |
179.1 |
| C26 |
C23 |
H12 |
H13 |
118.9 |
239.9 |
| H12 |
C23 |
C20 |
H10 |
172.2 |
299.2 |
| H12 |
C23 |
C20 |
H11 |
51.9 |
59.1 |
| C20 |
C23 |
H12 |
H13 |
241.0 |
120.0 |
| C26 |
C23 |
H13 |
H12 |
241.0 |
120.1 |
| H13 |
C23 |
C20 |
H10 |
52.8 |
59.2 |
| H13 |
C23 |
C20 |
H11 |
292.5 |
179.1 |
| C20 |
C23 |
H13 |
H12 |
119.0 |
239.9 |
| C28 |
C26 |
H14 |
N34 |
238.6 |
239.9 |
| H14 |
C26 |
N34 |
C40 |
27.0 |
5.1 |
| H14 |
C26 |
C23 |
H12 |
174.8 |
302.3 |
| H14 |
C26 |
C23 |
H13 |
294.1 |
182.3 |
| C31 |
C28 |
H15 |
H16 |
121.0 |
239.9 |
| H15 |
C28 |
C26 |
N34 |
68.9 |
297.5 |
| H15 |
C28 |
C26 |
H14 |
187.1 |
57.6 |
| C31 |
C28 |
H16 |
H15 |
239.0 |
120.1 |
| H16 |
C28 |
C26 |
N34 |
308.3 |
57.5 |
| H16 |
C28 |
C26 |
H14 |
66.4 |
177.7 |
| H17 |
C31 |
C28 |
H15 |
181.1 |
300.9 |
| H17 |
C31 |
C28 |
H16 |
301.8 |
180.8 |
| H18 |
C31 |
C28 |
H15 |
300.9 |
60.9 |
| H18 |
C31 |
C28 |
H16 |
61.6 |
300.8 |
| H19 |
C35 |
N37 |
C38 |
180.0 |
180.0 |
| H19 |
C35 |
N34 |
C40 |
179.8 |
180.2 |
| N37 |
C38 |
H20 |
C40 |
180.0 |
179.7 |
| C41 |
N43 |
H21 |
C45 |
180.0 |
180.0 |
| H21 |
N43 |
C45 |
C54 |
240.6 |
240.0 |
| C45 |
C54 |
H22 |
H23 |
120.0 |
120.0 |
| C45 |
C54 |
H22 |
H24 |
240.0 |
240.0 |
| H23 |
C54 |
H22 |
H24 |
120.0 |
120.0 |
| C45 |
C54 |
H23 |
H22 |
240.0 |
240.0 |
| C45 |
C54 |
H23 |
H24 |
120.0 |
120.0 |
| H22 |
C54 |
H23 |
H24 |
240.0 |
240.0 |
| C45 |
C54 |
H24 |
H22 |
120.0 |
120.0 |
| C45 |
C54 |
H24 |
H23 |
240.0 |
240.0 |
| H22 |
C54 |
H24 |
H23 |
120.0 |
120.0 |