Atom Nomenclature for 5FI

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 5FI

Atom Name (V3) Atom Name (V2)
C4 C4
C5 C5
C6 C6
N1 N1
N3 N3
FAB FAB
CBB CBB
FAC FAC
FAD FAD
CAU CAU
CAE CAE
CAF CAF
CAI CAI
CAX CAX
CAY CAY
NAS NAS
NAR NAR
CAV CAV
CAO CAO
NAZ NAZ
CAL CAL
CAN CAN
CAK CAK
CAM CAM
NBA NBA
CAJ CAJ
CAA CAA
C2 C2
H1 H1
H2 H2
H3 H3
H4 H4
H7 H7
H8 H8
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H5 H5