PDB Chemical Component 5FD

Ideal Model

Chemical Description

Name 5'-FLUORO-5'-DEOXYADENOSINE
Formula C10 H12 F N5 O3
Formal charge 0
Molecular weight 269.232 g/mol
Component type NON-POLYMER

Chemical features

Atom count 31
Chiral atom count 4
Chiral atoms C2' C3' C4' C1'
Observed leaving atoms O2'
Bond count 33
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 5'-deoxy-5'-fluoroadenosine
Systematic name (OpenEye OEToolkits) (2~{R},3~{R},4~{S},5~{S})-2-(6-aminopurin-9-yl)-5-(fluoranylmethyl)oxolane-3,4-diol

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CF)[C@@H](O)[C@H]3O
SMILES (CACTVS) Nc1ncnc2n(cnc12)[CH]3O[CH](CF)[CH](O)[CH]3O
Stereo SMILES (OpenEye) c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CF)O)O)N
InChI descriptor InChI=1S/C10H12FN5O3/c11-1-4-6(17)7(18)10(19-4)16-3-15-5-8(12)13-2-14-9(5)16/h2-4,6-7,10,17-18H,1H2,(H2,12,13,14)/t4-,6-,7-,10-/m1/s1
InChIKey descriptor QPVLKMICBYRPSX-KQYNXXCUSA-N

Status Information

Last modified 2022-06-06
Created 2003-12-16
Release status REL
Model PDB code 1RQR
Processing site RCSB