PDB Chemical Component 5FC

Ideal Model

Chemical Description

Name 5-FORMYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
Synonyms 2'-DEOXY-5-FORMYLCYTIDINE-5'-MONOPHOSPHATE
Formula C10 H14 N3 O8 P
Formal charge 0
Molecular weight 335.207 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 36
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3 HO3'
Bond count 37
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5-formylcytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(4-amino-5-methanoyl-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1C=O)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
SMILES (CACTVS) NC1=NC(=O)N(C=C1C=O)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)C=O)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H14N3O8P/c11-9-5(3-14)2-13(10(16)12-9)8-1-6(15)7(21-8)4-20-22(17,18)19/h2-3,6-8,15H,1,4H2,(H2,11,12,16)(H2,17,18,19)/t6-,7+,8+/m0/s1
InChIKey descriptor HDFNXAHZEYLDBJ-XLPZGREQSA-N

Status Information

Last modified 2011-06-04
Created 2004-04-06
Release status REL
Model PDB code 1VE8
Processing site RCSB