PDB Chemical Component 5FC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5FC
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
P |
OP2 |
1.484 |
1.618 |
P |
OP1 |
1.486 |
1.501 |
P |
O5' |
1.588 |
1.619 |
P |
OP3 |
|
1.616 |
OP2 |
HOP2 |
0.949 |
0.981 |
O5' |
C5' |
1.423 |
1.418 |
N1 |
C6 |
1.356 |
1.386 |
N1 |
C2 |
1.382 |
1.415 |
N1 |
C1' |
1.475 |
1.434 |
C6 |
C5 |
1.328 |
1.335 |
C6 |
H6 |
1.102 |
1.086 |
C2 |
O2 |
1.236 |
1.231 |
C2 |
N3 |
1.360 |
1.383 |
N3 |
C4 |
1.351 |
1.309 |
C4 |
N4 |
1.338 |
1.377 |
C4 |
C5 |
1.443 |
1.492 |
N4 |
HN41 |
1.020 |
0.990 |
N4 |
HN42 |
1.020 |
0.991 |
C5 |
C5A |
1.496 |
1.464 |
C2' |
C1' |
1.519 |
1.520 |
C2' |
C3' |
1.525 |
1.511 |
C2' |
H2' |
1.114 |
1.097 |
C2' |
H2'' |
1.115 |
1.095 |
C5' |
C4' |
1.509 |
1.523 |
C5' |
H5' |
1.114 |
1.092 |
C5' |
H5'' |
1.115 |
1.093 |
C4' |
O4' |
1.443 |
1.441 |
C4' |
C3' |
1.525 |
1.522 |
C4' |
H4' |
1.115 |
1.094 |
O4' |
C1' |
1.414 |
1.434 |
C1' |
H1' |
1.115 |
1.095 |
C3' |
O3' |
1.424 |
1.426 |
C3' |
H3' |
1.114 |
1.094 |
O3' |
HO3' |
0.949 |
0.973 |
C5A |
O5A |
1.229 |
1.226 |
C5A |
H5A |
1.102 |
1.104 |
OP3 |
HOP3 |
|
0.981 |
Bond Angles for 5FC
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP2 |
P |
OP1 |
119.7 |
115.3 |
OP2 |
P |
O5' |
108.0 |
103.7 |
OP2 |
P |
OP3 |
|
103.3 |
P |
OP2 |
HOP2 |
119.7 |
118.9 |
OP1 |
P |
O5' |
108.1 |
115.0 |
OP1 |
P |
OP3 |
|
115.0 |
O5' |
P |
OP3 |
|
102.9 |
P |
O5' |
C5' |
120.3 |
118.5 |
P |
OP3 |
HOP3 |
|
118.9 |
O5' |
C5' |
C4' |
109.7 |
108.9 |
O5' |
C5' |
H5' |
112.1 |
109.0 |
O5' |
C5' |
H5'' |
112.1 |
108.9 |
C6 |
N1 |
C2 |
119.5 |
119.5 |
C6 |
N1 |
C1' |
121.4 |
120.2 |
N1 |
C6 |
C5 |
121.8 |
122.7 |
N1 |
C6 |
H6 |
120.2 |
115.1 |
C2 |
N1 |
C1' |
119.0 |
120.3 |
N1 |
C2 |
O2 |
118.8 |
121.0 |
N1 |
C2 |
N3 |
119.5 |
118.7 |
N1 |
C1' |
C2' |
116.4 |
112.8 |
N1 |
C1' |
O4' |
106.9 |
109.3 |
N1 |
C1' |
H1' |
105.3 |
107.8 |
C5 |
C6 |
H6 |
118.0 |
122.2 |
C6 |
C5 |
C4 |
119.7 |
116.3 |
C6 |
C5 |
C5A |
121.8 |
117.8 |
O2 |
C2 |
N3 |
121.7 |
120.2 |
C2 |
N3 |
C4 |
122.1 |
121.4 |
N3 |
C4 |
N4 |
117.1 |
118.7 |
N3 |
C4 |
C5 |
117.2 |
121.3 |
N4 |
C4 |
C5 |
125.3 |
120.0 |
C4 |
N4 |
HN41 |
117.1 |
118.0 |
C4 |
N4 |
HN42 |
109.4 |
118.0 |
C4 |
C5 |
C5A |
118.2 |
125.9 |
HN41 |
N4 |
HN42 |
109.5 |
124.0 |
C5 |
C5A |
O5A |
121.3 |
122.6 |
C5 |
C5A |
H5A |
129.2 |
115.2 |
C1' |
C2' |
C3' |
103.5 |
102.5 |
C1' |
C2' |
H2' |
114.5 |
110.6 |
C1' |
C2' |
H2'' |
114.5 |
111.7 |
C2' |
C1' |
O4' |
105.3 |
107.4 |
C2' |
C1' |
H1' |
107.0 |
111.5 |
C3' |
C2' |
H2' |
114.5 |
109.7 |
C3' |
C2' |
H2'' |
114.5 |
114.1 |
C2' |
C3' |
C4' |
104.8 |
103.1 |
C2' |
C3' |
O3' |
112.6 |
109.7 |
C2' |
C3' |
H3' |
110.1 |
113.2 |
H2' |
C2' |
H2'' |
96.0 |
108.3 |
C4' |
C5' |
H5' |
112.1 |
110.3 |
C4' |
C5' |
H5'' |
112.1 |
110.3 |
C5' |
C4' |
O4' |
109.6 |
107.9 |
C5' |
C4' |
C3' |
113.8 |
112.9 |
C5' |
C4' |
H4' |
105.5 |
109.5 |
H5' |
C5' |
H5'' |
98.3 |
109.3 |
O4' |
C4' |
C3' |
106.5 |
106.2 |
O4' |
C4' |
H4' |
112.9 |
107.9 |
C4' |
O4' |
C1' |
110.2 |
109.3 |
C3' |
C4' |
H4' |
108.6 |
112.2 |
C4' |
C3' |
O3' |
108.2 |
109.9 |
C4' |
C3' |
H3' |
114.4 |
113.5 |
O4' |
C1' |
H1' |
116.5 |
108.0 |
O3' |
C3' |
H3' |
106.8 |
107.4 |
C3' |
O3' |
HO3' |
112.6 |
107.3 |
O5A |
C5A |
H5A |
109.5 |
122.2 |
Torsion Angles for 5FC
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP1 |
P |
OP2 |
O5' |
235.9 |
233.4 |
OP1 |
P |
OP2 |
OP3 |
|
126.3 |
O5' |
P |
OP2 |
OP3 |
|
252.9 |
OP2 |
P |
O5' |
C5' |
58.0 |
53.2 |
OP2 |
P |
OP3 |
HOP3 |
|
78.5 |
OP2 |
P |
OP1 |
O5' |
124.1 |
120.6 |
OP2 |
P |
OP1 |
OP3 |
|
239.9 |
OP1 |
P |
OP2 |
HOP2 |
180.0 |
48.8 |
O5' |
P |
OP1 |
OP3 |
|
119.3 |
OP1 |
P |
O5' |
C5' |
188.9 |
179.9 |
OP1 |
P |
OP3 |
HOP3 |
|
312.0 |
OP2 |
P |
O5' |
OP1 |
229.1 |
233.2 |
OP2 |
P |
O5' |
OP3 |
|
107.4 |
O5' |
P |
OP2 |
HOP2 |
304.1 |
175.4 |
OP1 |
P |
O5' |
OP3 |
|
234.2 |
O5' |
P |
OP3 |
HOP3 |
|
186.2 |
P |
O5' |
C5' |
C4' |
182.0 |
180.0 |
P |
O5' |
C5' |
H5' |
307.2 |
300.4 |
P |
O5' |
C5' |
H5'' |
56.8 |
59.6 |
OP2 |
P |
OP3 |
OP1 |
|
126.5 |
OP2 |
P |
OP3 |
O5' |
|
252.3 |
OP3 |
P |
OP2 |
HOP2 |
|
282.5 |
OP1 |
P |
OP3 |
O5' |
|
125.8 |
OP3 |
P |
O5' |
C5' |
|
305.8 |
HOP2 |
OP2 |
P |
OP1 |
180.0 |
48.8 |
HOP2 |
OP2 |
P |
O5' |
304.1 |
175.4 |
HOP2 |
OP2 |
P |
OP3 |
|
282.5 |
C5' |
O5' |
P |
OP3 |
|
305.8 |
C4' |
C5' |
O5' |
H5' |
234.7 |
239.6 |
C4' |
C5' |
O5' |
H5'' |
125.2 |
120.4 |
O5' |
C5' |
C4' |
O4' |
291.1 |
62.4 |
O5' |
C5' |
C4' |
C3' |
50.2 |
179.5 |
O5' |
C5' |
C4' |
H4' |
169.2 |
305.3 |
H5' |
C5' |
O5' |
H5'' |
250.5 |
240.8 |
C2 |
N1 |
C6 |
C1' |
177.9 |
180.0 |
C6 |
N1 |
C2 |
O2 |
176.8 |
180.1 |
C6 |
N1 |
C2 |
N3 |
356.9 |
0.0 |
C6 |
N1 |
C1' |
C2' |
302.3 |
273.5 |
C6 |
N1 |
C1' |
O4' |
59.6 |
32.9 |
C6 |
N1 |
C1' |
H1' |
184.1 |
150.0 |
C5 |
C6 |
N1 |
H6 |
180.0 |
180.0 |
N1 |
C6 |
C5 |
C4 |
359.5 |
0.0 |
N1 |
C6 |
C5 |
C5A |
185.8 |
180.0 |
C6 |
N1 |
C2 |
C1' |
182.0 |
180.0 |
C2 |
N1 |
C6 |
C5 |
3.2 |
360.0 |
C2 |
N1 |
C6 |
H6 |
183.2 |
180.0 |
C2 |
N1 |
C1' |
C2' |
124.4 |
93.5 |
C2 |
N1 |
C1' |
O4' |
241.7 |
212.9 |
C2 |
N1 |
C1' |
H1' |
6.2 |
330.0 |
O2 |
C2 |
N1 |
N3 |
179.8 |
180.1 |
N1 |
C2 |
N3 |
C4 |
0.2 |
360.0 |
C6 |
N1 |
C1' |
C2 |
177.9 |
180.0 |
C1' |
N1 |
C6 |
C5 |
185.3 |
180.0 |
C1' |
N1 |
C6 |
H6 |
5.3 |
0.0 |
C1' |
N1 |
C2 |
O2 |
354.7 |
0.1 |
C1' |
N1 |
C2 |
N3 |
174.9 |
180.0 |
N1 |
C1' |
C2' |
C3' |
149.5 |
147.4 |
N1 |
C1' |
C2' |
H2' |
274.8 |
30.6 |
N1 |
C1' |
C2' |
H2'' |
24.2 |
269.9 |
C2' |
C1' |
N1 |
O4' |
242.7 |
240.6 |
C2' |
C1' |
N1 |
H1' |
118.2 |
123.5 |
C4' |
O4' |
C1' |
N1 |
207.2 |
228.3 |
O4' |
C1' |
N1 |
H1' |
235.5 |
242.9 |
C5 |
C6 |
N1 |
C2 |
3.2 |
360.0 |
C5 |
C6 |
N1 |
C1' |
185.3 |
180.0 |
N1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
N3 |
C4 |
C5 |
C6 |
357.7 |
360.0 |
N4 |
C4 |
C5 |
C6 |
170.3 |
180.0 |
C4 |
C5 |
C6 |
C5A |
173.6 |
180.0 |
C6 |
C5 |
C5A |
O5A |
180.3 |
180.0 |
C6 |
C5 |
C5A |
H5A |
0.3 |
0.0 |
H6 |
C6 |
N1 |
C2 |
183.2 |
180.0 |
H6 |
C6 |
N1 |
C1' |
5.3 |
0.0 |
N1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
C4 |
179.5 |
180.0 |
H6 |
C6 |
C5 |
C5A |
5.8 |
360.0 |
O2 |
C2 |
N1 |
C1' |
354.7 |
0.1 |
N1 |
C2 |
O2 |
N3 |
180.2 |
179.9 |
O2 |
C2 |
N3 |
C4 |
180.4 |
179.9 |
N3 |
C2 |
N1 |
C1' |
174.9 |
180.0 |
N1 |
C2 |
N3 |
O2 |
179.8 |
180.1 |
C2 |
N3 |
C4 |
N4 |
189.2 |
180.0 |
C2 |
N3 |
C4 |
C5 |
2.4 |
0.0 |
C6 |
C5 |
C4 |
N3 |
357.7 |
360.0 |
N4 |
C4 |
N3 |
C5 |
186.8 |
180.0 |
N3 |
C4 |
N4 |
HN41 |
180.0 |
312.1 |
N3 |
C4 |
N4 |
HN42 |
54.7 |
132.1 |
N3 |
C4 |
C5 |
C5A |
171.6 |
180.0 |
C6 |
C5 |
C4 |
N4 |
170.3 |
180.0 |
N3 |
C4 |
N4 |
C5 |
172.6 |
180.0 |
N4 |
C4 |
C5 |
C5A |
344.1 |
0.0 |
HN41 |
N4 |
C4 |
HN42 |
125.3 |
180.0 |
C4 |
C5 |
C6 |
H6 |
179.5 |
180.0 |
C6 |
C5 |
C4 |
C5A |
186.1 |
180.0 |
N3 |
C4 |
C5 |
N4 |
187.4 |
180.0 |
C5 |
C4 |
N4 |
HN41 |
7.4 |
132.1 |
C5 |
C4 |
N4 |
HN42 |
242.1 |
312.1 |
C4 |
C5 |
C5A |
O5A |
6.5 |
360.0 |
C4 |
C5 |
C5A |
H5A |
186.6 |
180.0 |
HN41 |
N4 |
C4 |
C5 |
7.4 |
132.1 |
C4 |
N4 |
HN41 |
HN42 |
234.7 |
180.0 |
HN42 |
N4 |
C4 |
C5 |
242.1 |
312.1 |
C4 |
N4 |
HN42 |
HN41 |
129.6 |
180.0 |
C5A |
C5 |
C6 |
H6 |
5.8 |
360.0 |
C6 |
C5 |
C5A |
C4 |
173.7 |
180.0 |
O5A |
C5A |
C5 |
H5A |
180.0 |
179.9 |
N1 |
C1' |
C2' |
O4' |
118.2 |
120.5 |
N1 |
C1' |
C2' |
H1' |
242.7 |
238.6 |
C3' |
C2' |
C1' |
H2' |
234.7 |
116.9 |
C3' |
C2' |
C1' |
H2'' |
125.3 |
237.5 |
C1' |
C2' |
C3' |
C4' |
337.2 |
326.6 |
C1' |
C2' |
C3' |
O3' |
94.6 |
83.6 |
C1' |
C2' |
C3' |
H3' |
213.7 |
203.6 |
H2' |
C2' |
C1' |
H2'' |
250.6 |
120.7 |
C4' |
O4' |
C1' |
C2' |
331.6 |
351.0 |
O4' |
C1' |
C2' |
H1' |
124.5 |
118.1 |
C1' |
C2' |
C3' |
H2' |
125.3 |
242.5 |
C1' |
C2' |
C3' |
H2'' |
234.8 |
120.8 |
C3' |
C2' |
C1' |
O4' |
31.3 |
26.9 |
C3' |
C2' |
C1' |
H1' |
266.8 |
268.8 |
H2' |
C2' |
C3' |
H2'' |
109.5 |
238.3 |
C5' |
C4' |
C3' |
C2' |
246.0 |
271.2 |
O4' |
C4' |
C3' |
C2' |
6.9 |
29.2 |
C2' |
C3' |
C4' |
H4' |
128.8 |
146.9 |
C4' |
C3' |
C2' |
O3' |
242.6 |
242.9 |
C4' |
C3' |
C2' |
H3' |
123.5 |
123.0 |
O3' |
C3' |
C2' |
H3' |
240.9 |
240.1 |
C2' |
C3' |
O3' |
HO3' |
180.0 |
118.1 |
C1' |
C2' |
H2' |
C3' |
240.8 |
112.3 |
C1' |
C2' |
H2' |
H2'' |
120.3 |
237.3 |
H2' |
C2' |
C1' |
O4' |
156.6 |
270.0 |
H2' |
C2' |
C1' |
H1' |
32.1 |
151.9 |
C3' |
C2' |
H2' |
H2'' |
239.6 |
125.1 |
H2' |
C2' |
C3' |
C4' |
211.9 |
84.1 |
H2' |
C2' |
C3' |
O3' |
329.3 |
201.1 |
H2' |
C2' |
C3' |
H3' |
88.4 |
321.1 |
C1' |
C2' |
H2'' |
C3' |
119.2 |
244.4 |
C1' |
C2' |
H2'' |
H2' |
239.7 |
122.0 |
H2'' |
C2' |
C1' |
O4' |
266.0 |
149.4 |
H2'' |
C2' |
C1' |
H1' |
141.5 |
31.3 |
C3' |
C2' |
H2'' |
H2' |
120.4 |
237.5 |
H2'' |
C2' |
C3' |
C4' |
102.4 |
205.7 |
H2'' |
C2' |
C3' |
O3' |
219.8 |
322.8 |
H2'' |
C2' |
C3' |
H3' |
338.9 |
82.7 |
O5' |
C5' |
C4' |
H5' |
125.3 |
119.6 |
O5' |
C5' |
C4' |
H5'' |
234.7 |
240.5 |
C2' |
C3' |
C4' |
C5' |
246.0 |
271.2 |
H5' |
C5' |
C4' |
H5'' |
109.5 |
120.9 |
O4' |
C4' |
C5' |
C3' |
240.8 |
242.9 |
O4' |
C4' |
C5' |
H4' |
121.9 |
117.1 |
C5' |
C4' |
O4' |
C1' |
137.1 |
108.6 |
C3' |
C4' |
C5' |
H4' |
241.0 |
234.2 |
C5' |
C4' |
C3' |
O3' |
125.6 |
154.2 |
C5' |
C4' |
C3' |
H3' |
6.7 |
34.0 |
O5' |
C5' |
H5' |
C4' |
236.1 |
240.5 |
O5' |
C5' |
H5' |
H5'' |
118.1 |
119.0 |
C4' |
C5' |
H5' |
H5'' |
242.0 |
238.5 |
H5' |
C5' |
C4' |
O4' |
165.8 |
302.9 |
H5' |
C5' |
C4' |
C3' |
284.9 |
60.0 |
H5' |
C5' |
C4' |
H4' |
43.9 |
185.7 |
O5' |
C5' |
H5'' |
C4' |
123.9 |
119.4 |
O5' |
C5' |
H5'' |
H5' |
241.9 |
241.0 |
C4' |
C5' |
H5'' |
H5' |
118.0 |
121.5 |
H5'' |
C5' |
C4' |
O4' |
56.3 |
181.9 |
H5'' |
C5' |
C4' |
C3' |
175.5 |
299.0 |
H5'' |
C5' |
C4' |
H4' |
294.5 |
64.8 |
N1 |
C1' |
O4' |
C4' |
207.2 |
228.3 |
C2' |
C1' |
O4' |
C4' |
331.6 |
351.0 |
C2' |
C3' |
C4' |
O4' |
6.9 |
29.2 |
O4' |
C4' |
C5' |
H5' |
165.8 |
302.9 |
O4' |
C4' |
C5' |
H5'' |
56.3 |
181.9 |
C5' |
C4' |
O4' |
C3' |
123.6 |
121.4 |
C5' |
C4' |
O4' |
H4' |
242.7 |
241.8 |
C3' |
C4' |
O4' |
H4' |
119.1 |
120.5 |
O4' |
C4' |
C3' |
O3' |
246.5 |
272.3 |
O4' |
C4' |
C3' |
H3' |
127.6 |
152.1 |
C4' |
O4' |
C1' |
H1' |
89.9 |
111.3 |
C4' |
C3' |
C2' |
H2' |
211.9 |
84.1 |
C4' |
C3' |
C2' |
H2'' |
102.4 |
205.7 |
C2' |
C3' |
C4' |
O3' |
120.4 |
116.9 |
C2' |
C3' |
C4' |
H3' |
239.3 |
237.2 |
C3' |
C4' |
C5' |
H5' |
284.9 |
60.0 |
C3' |
C4' |
C5' |
H5'' |
175.5 |
299.0 |
C5' |
C4' |
C3' |
O4' |
239.1 |
241.9 |
C5' |
C4' |
C3' |
H4' |
117.2 |
124.3 |
O4' |
C4' |
C3' |
H4' |
238.1 |
242.4 |
C3' |
C4' |
O4' |
C1' |
13.5 |
347.3 |
O3' |
C3' |
C4' |
H3' |
119.0 |
120.2 |
C4' |
C3' |
O3' |
HO3' |
295.4 |
230.8 |
H4' |
C4' |
C5' |
H5' |
43.9 |
185.7 |
H4' |
C4' |
C5' |
H5'' |
294.5 |
64.8 |
C5' |
C4' |
H4' |
O4' |
119.7 |
117.1 |
C5' |
C4' |
H4' |
C3' |
237.6 |
233.8 |
O4' |
C4' |
H4' |
C3' |
117.9 |
116.7 |
H4' |
C4' |
O4' |
C1' |
254.3 |
226.8 |
H4' |
C4' |
C3' |
O3' |
8.4 |
29.9 |
H4' |
C4' |
C3' |
H3' |
249.5 |
269.7 |
N1 |
C1' |
O4' |
C2' |
235.6 |
237.3 |
N1 |
C1' |
O4' |
H1' |
117.3 |
117.0 |
O4' |
C1' |
C2' |
C3' |
31.3 |
26.9 |
O4' |
C1' |
C2' |
H2' |
156.6 |
270.0 |
O4' |
C1' |
C2' |
H2'' |
266.0 |
149.4 |
C2' |
C1' |
O4' |
H1' |
241.7 |
239.7 |
C1' |
O4' |
C4' |
C3' |
13.5 |
347.3 |
C1' |
O4' |
C4' |
H4' |
254.3 |
226.8 |
N1 |
C1' |
H1' |
C2' |
124.4 |
124.3 |
N1 |
C1' |
H1' |
O4' |
241.8 |
242.0 |
H1' |
C1' |
C2' |
C3' |
266.8 |
268.8 |
H1' |
C1' |
C2' |
H2' |
32.1 |
151.9 |
H1' |
C1' |
C2' |
H2'' |
141.5 |
31.3 |
C2' |
C1' |
H1' |
O4' |
117.4 |
117.7 |
O3' |
C3' |
C2' |
H2' |
329.3 |
201.1 |
O3' |
C3' |
C2' |
H2'' |
219.8 |
322.8 |
C2' |
C3' |
O3' |
C4' |
244.6 |
247.3 |
C2' |
C3' |
O3' |
H3' |
121.0 |
123.4 |
O3' |
C3' |
C4' |
H4' |
8.4 |
29.9 |
C4' |
C3' |
O3' |
H3' |
236.4 |
236.1 |
H3' |
C3' |
C2' |
H2' |
88.4 |
321.1 |
H3' |
C3' |
C2' |
H2'' |
338.9 |
82.7 |
C2' |
C3' |
H3' |
C4' |
117.7 |
117.1 |
C2' |
C3' |
H3' |
O3' |
237.4 |
238.7 |
H3' |
C3' |
C4' |
H4' |
249.5 |
269.7 |
C4' |
C3' |
H3' |
O3' |
119.7 |
121.7 |
H3' |
C3' |
O3' |
HO3' |
59.1 |
354.7 |
HO3' |
O3' |
C3' |
H3' |
59.1 |
354.7 |
C5 |
C5A |
O5A |
H5A |
180.0 |
180.1 |
C5 |
C5A |
H5A |
O5A |
180.0 |
179.9 |