PDB Chemical Component 5FC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5FC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP2 1.484 1.618
P OP1 1.486 1.501
P O5' 1.588 1.619
P OP3   1.616
OP2 HOP2 0.949 0.981
O5' C5' 1.423 1.418
N1 C6 1.356 1.386
N1 C2 1.382 1.415
N1 C1' 1.475 1.434
C6 C5 1.328 1.335
C6 H6 1.102 1.086
C2 O2 1.236 1.231
C2 N3 1.360 1.383
N3 C4 1.351 1.309
C4 N4 1.338 1.377
C4 C5 1.443 1.492
N4 HN41 1.020 0.990
N4 HN42 1.020 0.991
C5 C5A 1.496 1.464
C2' C1' 1.519 1.520
C2' C3' 1.525 1.511
C2' H2' 1.114 1.097
C2' H2'' 1.115 1.095
C5' C4' 1.509 1.523
C5' H5' 1.114 1.092
C5' H5'' 1.115 1.093
C4' O4' 1.443 1.441
C4' C3' 1.525 1.522
C4' H4' 1.115 1.094
O4' C1' 1.414 1.434
C1' H1' 1.115 1.095
C3' O3' 1.424 1.426
C3' H3' 1.114 1.094
O3' HO3' 0.949 0.973
C5A O5A 1.229 1.226
C5A H5A 1.102 1.104
OP3 HOP3   0.981

Bond Angles for 5FC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 119.7 115.3
OP2 P O5' 108.0 103.7
OP2 P OP3   103.3
P OP2 HOP2 119.7 118.9
OP1 P O5' 108.1 115.0
OP1 P OP3   115.0
O5' P OP3   102.9
P O5' C5' 120.3 118.5
P OP3 HOP3   118.9
O5' C5' C4' 109.7 108.9
O5' C5' H5' 112.1 109.0
O5' C5' H5'' 112.1 108.9
C6 N1 C2 119.5 119.5
C6 N1 C1' 121.4 120.2
N1 C6 C5 121.8 122.7
N1 C6 H6 120.2 115.1
C2 N1 C1' 119.0 120.3
N1 C2 O2 118.8 121.0
N1 C2 N3 119.5 118.7
N1 C1' C2' 116.4 112.8
N1 C1' O4' 106.9 109.3
N1 C1' H1' 105.3 107.8
C5 C6 H6 118.0 122.2
C6 C5 C4 119.7 116.3
C6 C5 C5A 121.8 117.8
O2 C2 N3 121.7 120.2
C2 N3 C4 122.1 121.4
N3 C4 N4 117.1 118.7
N3 C4 C5 117.2 121.3
N4 C4 C5 125.3 120.0
C4 N4 HN41 117.1 118.0
C4 N4 HN42 109.4 118.0
C4 C5 C5A 118.2 125.9
HN41 N4 HN42 109.5 124.0
C5 C5A O5A 121.3 122.6
C5 C5A H5A 129.2 115.2
C1' C2' C3' 103.5 102.5
C1' C2' H2' 114.5 110.6
C1' C2' H2'' 114.5 111.7
C2' C1' O4' 105.3 107.4
C2' C1' H1' 107.0 111.5
C3' C2' H2' 114.5 109.7
C3' C2' H2'' 114.5 114.1
C2' C3' C4' 104.8 103.1
C2' C3' O3' 112.6 109.7
C2' C3' H3' 110.1 113.2
H2' C2' H2'' 96.0 108.3
C4' C5' H5' 112.1 110.3
C4' C5' H5'' 112.1 110.3
C5' C4' O4' 109.6 107.9
C5' C4' C3' 113.8 112.9
C5' C4' H4' 105.5 109.5
H5' C5' H5'' 98.3 109.3
O4' C4' C3' 106.5 106.2
O4' C4' H4' 112.9 107.9
C4' O4' C1' 110.2 109.3
C3' C4' H4' 108.6 112.2
C4' C3' O3' 108.2 109.9
C4' C3' H3' 114.4 113.5
O4' C1' H1' 116.5 108.0
O3' C3' H3' 106.8 107.4
C3' O3' HO3' 112.6 107.3
O5A C5A H5A 109.5 122.2

Torsion Angles for 5FC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 O5' 235.9 233.4
OP1 P OP2 OP3   126.3
O5' P OP2 OP3   252.9
OP2 P O5' C5' 58.0 53.2
OP2 P OP3 HOP3   78.5
OP2 P OP1 O5' 124.1 120.6
OP2 P OP1 OP3   239.9
OP1 P OP2 HOP2 180.0 48.8
O5' P OP1 OP3   119.3
OP1 P O5' C5' 188.9 179.9
OP1 P OP3 HOP3   312.0
OP2 P O5' OP1 229.1 233.2
OP2 P O5' OP3   107.4
O5' P OP2 HOP2 304.1 175.4
OP1 P O5' OP3   234.2
O5' P OP3 HOP3   186.2
P O5' C5' C4' 182.0 180.0
P O5' C5' H5' 307.2 300.4
P O5' C5' H5'' 56.8 59.6
OP2 P OP3 OP1   126.5
OP2 P OP3 O5'   252.3
OP3 P OP2 HOP2   282.5
OP1 P OP3 O5'   125.8
OP3 P O5' C5'   305.8
HOP2 OP2 P OP1 180.0 48.8
HOP2 OP2 P O5' 304.1 175.4
HOP2 OP2 P OP3   282.5
C5' O5' P OP3   305.8
C4' C5' O5' H5' 234.7 239.6
C4' C5' O5' H5'' 125.2 120.4
O5' C5' C4' O4' 291.1 62.4
O5' C5' C4' C3' 50.2 179.5
O5' C5' C4' H4' 169.2 305.3
H5' C5' O5' H5'' 250.5 240.8
C2 N1 C6 C1' 177.9 180.0
C6 N1 C2 O2 176.8 180.1
C6 N1 C2 N3 356.9 0.0
C6 N1 C1' C2' 302.3 273.5
C6 N1 C1' O4' 59.6 32.9
C6 N1 C1' H1' 184.1 150.0
C5 C6 N1 H6 180.0 180.0
N1 C6 C5 C4 359.5 0.0
N1 C6 C5 C5A 185.8 180.0
C6 N1 C2 C1' 182.0 180.0
C2 N1 C6 C5 3.2 360.0
C2 N1 C6 H6 183.2 180.0
C2 N1 C1' C2' 124.4 93.5
C2 N1 C1' O4' 241.7 212.9
C2 N1 C1' H1' 6.2 330.0
O2 C2 N1 N3 179.8 180.1
N1 C2 N3 C4 0.2 360.0
C6 N1 C1' C2 177.9 180.0
C1' N1 C6 C5 185.3 180.0
C1' N1 C6 H6 5.3 0.0
C1' N1 C2 O2 354.7 0.1
C1' N1 C2 N3 174.9 180.0
N1 C1' C2' C3' 149.5 147.4
N1 C1' C2' H2' 274.8 30.6
N1 C1' C2' H2'' 24.2 269.9
C2' C1' N1 O4' 242.7 240.6
C2' C1' N1 H1' 118.2 123.5
C4' O4' C1' N1 207.2 228.3
O4' C1' N1 H1' 235.5 242.9
C5 C6 N1 C2 3.2 360.0
C5 C6 N1 C1' 185.3 180.0
N1 C6 C5 H6 180.0 180.0
N3 C4 C5 C6 357.7 360.0
N4 C4 C5 C6 170.3 180.0
C4 C5 C6 C5A 173.6 180.0
C6 C5 C5A O5A 180.3 180.0
C6 C5 C5A H5A 0.3 0.0
H6 C6 N1 C2 183.2 180.0
H6 C6 N1 C1' 5.3 0.0
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 C4 179.5 180.0
H6 C6 C5 C5A 5.8 360.0
O2 C2 N1 C1' 354.7 0.1
N1 C2 O2 N3 180.2 179.9
O2 C2 N3 C4 180.4 179.9
N3 C2 N1 C1' 174.9 180.0
N1 C2 N3 O2 179.8 180.1
C2 N3 C4 N4 189.2 180.0
C2 N3 C4 C5 2.4 0.0
C6 C5 C4 N3 357.7 360.0
N4 C4 N3 C5 186.8 180.0
N3 C4 N4 HN41 180.0 312.1
N3 C4 N4 HN42 54.7 132.1
N3 C4 C5 C5A 171.6 180.0
C6 C5 C4 N4 170.3 180.0
N3 C4 N4 C5 172.6 180.0
N4 C4 C5 C5A 344.1 0.0
HN41 N4 C4 HN42 125.3 180.0
C4 C5 C6 H6 179.5 180.0
C6 C5 C4 C5A 186.1 180.0
N3 C4 C5 N4 187.4 180.0
C5 C4 N4 HN41 7.4 132.1
C5 C4 N4 HN42 242.1 312.1
C4 C5 C5A O5A 6.5 360.0
C4 C5 C5A H5A 186.6 180.0
HN41 N4 C4 C5 7.4 132.1
C4 N4 HN41 HN42 234.7 180.0
HN42 N4 C4 C5 242.1 312.1
C4 N4 HN42 HN41 129.6 180.0
C5A C5 C6 H6 5.8 360.0
C6 C5 C5A C4 173.7 180.0
O5A C5A C5 H5A 180.0 179.9
N1 C1' C2' O4' 118.2 120.5
N1 C1' C2' H1' 242.7 238.6
C3' C2' C1' H2' 234.7 116.9
C3' C2' C1' H2'' 125.3 237.5
C1' C2' C3' C4' 337.2 326.6
C1' C2' C3' O3' 94.6 83.6
C1' C2' C3' H3' 213.7 203.6
H2' C2' C1' H2'' 250.6 120.7
C4' O4' C1' C2' 331.6 351.0
O4' C1' C2' H1' 124.5 118.1
C1' C2' C3' H2' 125.3 242.5
C1' C2' C3' H2'' 234.8 120.8
C3' C2' C1' O4' 31.3 26.9
C3' C2' C1' H1' 266.8 268.8
H2' C2' C3' H2'' 109.5 238.3
C5' C4' C3' C2' 246.0 271.2
O4' C4' C3' C2' 6.9 29.2
C2' C3' C4' H4' 128.8 146.9
C4' C3' C2' O3' 242.6 242.9
C4' C3' C2' H3' 123.5 123.0
O3' C3' C2' H3' 240.9 240.1
C2' C3' O3' HO3' 180.0 118.1
C1' C2' H2' C3' 240.8 112.3
C1' C2' H2' H2'' 120.3 237.3
H2' C2' C1' O4' 156.6 270.0
H2' C2' C1' H1' 32.1 151.9
C3' C2' H2' H2'' 239.6 125.1
H2' C2' C3' C4' 211.9 84.1
H2' C2' C3' O3' 329.3 201.1
H2' C2' C3' H3' 88.4 321.1
C1' C2' H2'' C3' 119.2 244.4
C1' C2' H2'' H2' 239.7 122.0
H2'' C2' C1' O4' 266.0 149.4
H2'' C2' C1' H1' 141.5 31.3
C3' C2' H2'' H2' 120.4 237.5
H2'' C2' C3' C4' 102.4 205.7
H2'' C2' C3' O3' 219.8 322.8
H2'' C2' C3' H3' 338.9 82.7
O5' C5' C4' H5' 125.3 119.6
O5' C5' C4' H5'' 234.7 240.5
C2' C3' C4' C5' 246.0 271.2
H5' C5' C4' H5'' 109.5 120.9
O4' C4' C5' C3' 240.8 242.9
O4' C4' C5' H4' 121.9 117.1
C5' C4' O4' C1' 137.1 108.6
C3' C4' C5' H4' 241.0 234.2
C5' C4' C3' O3' 125.6 154.2
C5' C4' C3' H3' 6.7 34.0
O5' C5' H5' C4' 236.1 240.5
O5' C5' H5' H5'' 118.1 119.0
C4' C5' H5' H5'' 242.0 238.5
H5' C5' C4' O4' 165.8 302.9
H5' C5' C4' C3' 284.9 60.0
H5' C5' C4' H4' 43.9 185.7
O5' C5' H5'' C4' 123.9 119.4
O5' C5' H5'' H5' 241.9 241.0
C4' C5' H5'' H5' 118.0 121.5
H5'' C5' C4' O4' 56.3 181.9
H5'' C5' C4' C3' 175.5 299.0
H5'' C5' C4' H4' 294.5 64.8
N1 C1' O4' C4' 207.2 228.3
C2' C1' O4' C4' 331.6 351.0
C2' C3' C4' O4' 6.9 29.2
O4' C4' C5' H5' 165.8 302.9
O4' C4' C5' H5'' 56.3 181.9
C5' C4' O4' C3' 123.6 121.4
C5' C4' O4' H4' 242.7 241.8
C3' C4' O4' H4' 119.1 120.5
O4' C4' C3' O3' 246.5 272.3
O4' C4' C3' H3' 127.6 152.1
C4' O4' C1' H1' 89.9 111.3
C4' C3' C2' H2' 211.9 84.1
C4' C3' C2' H2'' 102.4 205.7
C2' C3' C4' O3' 120.4 116.9
C2' C3' C4' H3' 239.3 237.2
C3' C4' C5' H5' 284.9 60.0
C3' C4' C5' H5'' 175.5 299.0
C5' C4' C3' O4' 239.1 241.9
C5' C4' C3' H4' 117.2 124.3
O4' C4' C3' H4' 238.1 242.4
C3' C4' O4' C1' 13.5 347.3
O3' C3' C4' H3' 119.0 120.2
C4' C3' O3' HO3' 295.4 230.8
H4' C4' C5' H5' 43.9 185.7
H4' C4' C5' H5'' 294.5 64.8
C5' C4' H4' O4' 119.7 117.1
C5' C4' H4' C3' 237.6 233.8
O4' C4' H4' C3' 117.9 116.7
H4' C4' O4' C1' 254.3 226.8
H4' C4' C3' O3' 8.4 29.9
H4' C4' C3' H3' 249.5 269.7
N1 C1' O4' C2' 235.6 237.3
N1 C1' O4' H1' 117.3 117.0
O4' C1' C2' C3' 31.3 26.9
O4' C1' C2' H2' 156.6 270.0
O4' C1' C2' H2'' 266.0 149.4
C2' C1' O4' H1' 241.7 239.7
C1' O4' C4' C3' 13.5 347.3
C1' O4' C4' H4' 254.3 226.8
N1 C1' H1' C2' 124.4 124.3
N1 C1' H1' O4' 241.8 242.0
H1' C1' C2' C3' 266.8 268.8
H1' C1' C2' H2' 32.1 151.9
H1' C1' C2' H2'' 141.5 31.3
C2' C1' H1' O4' 117.4 117.7
O3' C3' C2' H2' 329.3 201.1
O3' C3' C2' H2'' 219.8 322.8
C2' C3' O3' C4' 244.6 247.3
C2' C3' O3' H3' 121.0 123.4
O3' C3' C4' H4' 8.4 29.9
C4' C3' O3' H3' 236.4 236.1
H3' C3' C2' H2' 88.4 321.1
H3' C3' C2' H2'' 338.9 82.7
C2' C3' H3' C4' 117.7 117.1
C2' C3' H3' O3' 237.4 238.7
H3' C3' C4' H4' 249.5 269.7
C4' C3' H3' O3' 119.7 121.7
H3' C3' O3' HO3' 59.1 354.7
HO3' O3' C3' H3' 59.1 354.7
C5 C5A O5A H5A 180.0 180.1
C5 C5A H5A O5A 180.0 179.9