Atom Nomenclature for 5EH

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 5EH

Atom Name (V3) Atom Name (V2)
C01 C01
N02 N02
C03 C03
C04 C04
C05 C05
C06 C06
C07 C07
C08 C08
C09 C09
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
O15 O15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
H01 H01
H01A H01A
H01B H01B
H03 H03
H03A H03A
H03B H03B
H04 H04
H04A H04A
H05 H05
H05A H05A
H06 H06
H09 H09
H10 H10
H11 H11
H12 H12
H14 H14
H14A H14A
H17 H17
H18 H18
H19 H19
H20 H20