PDB Chemical Component 5EE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5EE
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
S19 |
O20 |
1.433 |
1.421 |
S19 |
O21 |
1.434 |
1.420 |
S19 |
N22 |
1.744 |
1.656 |
S19 |
C24 |
1.699 |
1.762 |
N22 |
N1 |
1.499 |
1.401 |
N22 |
H22 |
1.000 |
0.970 |
C24 |
S3 |
1.706 |
1.785 |
C24 |
C30 |
1.445 |
1.356 |
S3 |
C27 |
1.707 |
1.785 |
C27 |
C29 |
1.448 |
1.355 |
C27 |
H27 |
1.080 |
1.080 |
C29 |
C30 |
1.442 |
1.382 |
C29 |
H29 |
1.080 |
1.080 |
C30 |
H30 |
1.080 |
1.080 |
C1 |
C2 |
1.524 |
1.508 |
C1 |
C14 |
1.538 |
1.531 |
C1 |
H11 |
1.100 |
1.089 |
C1 |
H12 |
1.100 |
1.090 |
C2 |
C4 |
1.400 |
1.382 |
C2 |
C3 |
1.401 |
1.382 |
C4 |
C5 |
1.399 |
1.382 |
C4 |
H4 |
1.080 |
1.080 |
C5 |
C8 |
1.401 |
1.383 |
C5 |
H5 |
1.080 |
1.080 |
C6 |
C8 |
1.456 |
1.385 |
C6 |
C3 |
1.401 |
1.384 |
C6 |
CL2 |
1.742 |
1.736 |
C8 |
CL1 |
1.759 |
1.736 |
N1 |
C9 |
1.339 |
1.345 |
N1 |
C7 |
1.339 |
1.324 |
C9 |
S1 |
1.757 |
1.788 |
C9 |
S2 |
1.681 |
1.712 |
C14 |
C7 |
1.521 |
1.522 |
C14 |
S1 |
1.823 |
1.837 |
C14 |
H14 |
1.100 |
1.089 |
C7 |
O1 |
1.236 |
1.213 |
C3 |
H3 |
1.080 |
1.080 |
Bond Angles for 5EE
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O20 |
S19 |
O21 |
120.0 |
125.4 |
O20 |
S19 |
N22 |
106.2 |
105.7 |
O20 |
S19 |
C24 |
109.1 |
105.7 |
O21 |
S19 |
N22 |
105.0 |
105.8 |
O21 |
S19 |
C24 |
109.1 |
105.8 |
N22 |
S19 |
C24 |
106.6 |
107.4 |
S19 |
N22 |
N1 |
113.8 |
120.0 |
S19 |
N22 |
H22 |
108.0 |
120.0 |
S19 |
C24 |
S3 |
127.7 |
129.0 |
S19 |
C24 |
C30 |
119.8 |
129.1 |
N1 |
N22 |
H22 |
108.0 |
120.0 |
N22 |
N1 |
C9 |
118.8 |
118.3 |
N22 |
N1 |
C7 |
126.1 |
118.3 |
S3 |
C24 |
C30 |
112.6 |
101.9 |
C24 |
S3 |
C27 |
93.2 |
98.1 |
C24 |
C30 |
C29 |
110.8 |
119.0 |
C24 |
C30 |
H30 |
124.6 |
120.5 |
S3 |
C27 |
C29 |
112.1 |
102.0 |
S3 |
C27 |
H27 |
123.9 |
129.0 |
C29 |
C27 |
H27 |
123.9 |
129.0 |
C27 |
C29 |
C30 |
111.3 |
119.0 |
C27 |
C29 |
H29 |
124.4 |
120.6 |
C30 |
C29 |
H29 |
124.4 |
120.4 |
C29 |
C30 |
H30 |
124.6 |
120.5 |
C2 |
C1 |
C14 |
118.4 |
109.4 |
C2 |
C1 |
H11 |
104.6 |
109.5 |
C2 |
C1 |
H12 |
106.6 |
109.5 |
C1 |
C2 |
C4 |
118.1 |
120.0 |
C1 |
C2 |
C3 |
121.2 |
120.0 |
C14 |
C1 |
H11 |
104.6 |
109.5 |
C14 |
C1 |
H12 |
106.6 |
109.4 |
C1 |
C14 |
C7 |
112.7 |
111.3 |
C1 |
C14 |
S1 |
110.6 |
111.3 |
C1 |
C14 |
H14 |
104.1 |
111.1 |
H11 |
C1 |
H12 |
116.7 |
109.5 |
C4 |
C2 |
C3 |
120.7 |
120.1 |
C2 |
C4 |
C5 |
121.1 |
120.0 |
C2 |
C4 |
H4 |
119.5 |
120.0 |
C2 |
C3 |
C6 |
119.2 |
120.0 |
C2 |
C3 |
H3 |
120.4 |
120.0 |
C5 |
C4 |
H4 |
119.4 |
120.0 |
C4 |
C5 |
C8 |
119.9 |
120.0 |
C4 |
C5 |
H5 |
120.1 |
120.0 |
C8 |
C5 |
H5 |
120.0 |
120.0 |
C5 |
C8 |
C6 |
118.7 |
120.0 |
C5 |
C8 |
CL1 |
120.4 |
120.0 |
C8 |
C6 |
C3 |
120.4 |
119.9 |
C8 |
C6 |
CL2 |
120.2 |
120.0 |
C6 |
C8 |
CL1 |
120.9 |
120.0 |
C3 |
C6 |
CL2 |
119.4 |
120.0 |
C6 |
C3 |
H3 |
120.4 |
120.0 |
C9 |
N1 |
C7 |
115.1 |
123.4 |
N1 |
C9 |
S1 |
110.1 |
103.9 |
N1 |
C9 |
S2 |
126.7 |
128.1 |
N1 |
C7 |
C14 |
116.2 |
115.3 |
N1 |
C7 |
O1 |
121.5 |
122.3 |
S1 |
C9 |
S2 |
123.1 |
128.0 |
C9 |
S1 |
C14 |
92.3 |
97.5 |
C7 |
C14 |
S1 |
100.6 |
99.9 |
C7 |
C14 |
H14 |
113.6 |
111.4 |
C14 |
C7 |
O1 |
122.3 |
122.3 |
S1 |
C14 |
H14 |
115.6 |
111.4 |
Torsion Angles for 5EE
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O21 |
S19 |
O20 |
N22 |
241.3 |
236.9 |
O21 |
S19 |
O20 |
C24 |
126.8 |
123.2 |
N22 |
S19 |
O20 |
C24 |
245.5 |
246.3 |
O20 |
S19 |
N22 |
N1 |
236.9 |
172.6 |
O20 |
S19 |
N22 |
H22 |
356.9 |
352.6 |
O20 |
S19 |
C24 |
S3 |
153.1 |
157.4 |
O20 |
S19 |
C24 |
C30 |
332.9 |
337.2 |
O20 |
S19 |
O21 |
N22 |
119.3 |
123.1 |
O20 |
S19 |
O21 |
C24 |
233.2 |
236.9 |
N22 |
S19 |
O21 |
C24 |
113.9 |
113.7 |
O21 |
S19 |
N22 |
N1 |
5.0 |
307.4 |
O21 |
S19 |
N22 |
H22 |
125.0 |
127.4 |
O21 |
S19 |
C24 |
S3 |
20.3 |
22.6 |
O21 |
S19 |
C24 |
C30 |
200.1 |
202.3 |
O20 |
S19 |
N22 |
O21 |
231.9 |
225.2 |
O20 |
S19 |
N22 |
C24 |
116.3 |
112.5 |
O21 |
S19 |
N22 |
C24 |
244.4 |
247.4 |
N22 |
S19 |
C24 |
S3 |
267.4 |
270.0 |
N22 |
S19 |
C24 |
C30 |
87.2 |
89.7 |
N1 |
N22 |
S19 |
H22 |
240.0 |
180.0 |
S19 |
N22 |
N1 |
C9 |
97.4 |
90.0 |
S19 |
N22 |
N1 |
C7 |
279.2 |
270.0 |
O20 |
S19 |
C24 |
O21 |
132.8 |
134.8 |
O20 |
S19 |
C24 |
N22 |
245.7 |
247.4 |
O21 |
S19 |
C24 |
N22 |
112.9 |
112.6 |
C24 |
S19 |
N22 |
N1 |
120.7 |
60.0 |
C24 |
S19 |
N22 |
H22 |
240.6 |
240.1 |
S3 |
C24 |
S19 |
C30 |
180.2 |
180.3 |
S19 |
C24 |
S3 |
C27 |
179.8 |
180.0 |
S19 |
C24 |
C30 |
C29 |
180.2 |
179.8 |
S19 |
C24 |
C30 |
H30 |
0.2 |
0.3 |
N1 |
N22 |
S19 |
C24 |
120.7 |
60.0 |
S19 |
N22 |
N1 |
H22 |
120.0 |
180.0 |
C9 |
N1 |
N22 |
C7 |
178.2 |
180.0 |
N22 |
N1 |
C9 |
S1 |
197.5 |
180.0 |
N22 |
N1 |
C9 |
S2 |
20.2 |
360.0 |
N22 |
N1 |
C7 |
C14 |
179.4 |
180.0 |
N22 |
N1 |
C7 |
O1 |
355.7 |
360.0 |
H22 |
N22 |
S19 |
C24 |
240.6 |
240.1 |
S19 |
N22 |
H22 |
N1 |
236.5 |
180.0 |
H22 |
N22 |
N1 |
C9 |
337.4 |
269.9 |
H22 |
N22 |
N1 |
C7 |
159.2 |
89.9 |
S19 |
C24 |
S3 |
C30 |
179.8 |
179.8 |
S3 |
C24 |
C30 |
C29 |
360.0 |
359.6 |
S3 |
C24 |
C30 |
H30 |
180.0 |
180.0 |
C24 |
S3 |
C27 |
C29 |
0.0 |
0.0 |
C24 |
S3 |
C27 |
H27 |
180.1 |
180.0 |
S19 |
C24 |
C30 |
S3 |
180.2 |
180.2 |
C30 |
C24 |
S3 |
C27 |
360.0 |
0.2 |
C27 |
C29 |
C30 |
C24 |
0.1 |
0.5 |
C24 |
C30 |
C29 |
H29 |
180.0 |
180.2 |
C29 |
C30 |
C24 |
H30 |
180.0 |
179.5 |
C27 |
S3 |
C24 |
C30 |
360.0 |
0.2 |
C29 |
C27 |
S3 |
H27 |
180.0 |
180.1 |
S3 |
C27 |
C29 |
C30 |
359.9 |
359.7 |
S3 |
C27 |
C29 |
H29 |
179.9 |
180.0 |
C24 |
C30 |
C29 |
C27 |
0.1 |
0.5 |
S3 |
C27 |
C29 |
H27 |
180.0 |
179.9 |
C30 |
C29 |
C27 |
H29 |
180.0 |
179.7 |
C27 |
C29 |
C30 |
H30 |
180.1 |
180.0 |
S3 |
C27 |
H27 |
C29 |
180.0 |
180.1 |
H27 |
C27 |
C29 |
C30 |
179.9 |
179.8 |
H27 |
C27 |
C29 |
H29 |
359.9 |
0.0 |
C24 |
C30 |
C29 |
H30 |
180.0 |
180.5 |
C30 |
C29 |
C27 |
H27 |
179.9 |
179.8 |
C27 |
C29 |
C30 |
H29 |
180.0 |
180.3 |
H29 |
C29 |
C27 |
H27 |
359.9 |
0.0 |
C27 |
C29 |
H29 |
C30 |
180.0 |
179.7 |
H29 |
C29 |
C30 |
H30 |
0.0 |
359.8 |
C24 |
C30 |
H30 |
C29 |
180.0 |
179.5 |
H30 |
C30 |
C29 |
H29 |
0.0 |
359.8 |
C14 |
C1 |
C2 |
H11 |
115.8 |
240.0 |
C14 |
C1 |
C2 |
H12 |
240.0 |
119.9 |
C2 |
C1 |
C14 |
C7 |
48.0 |
181.0 |
C2 |
C1 |
C14 |
S1 |
296.3 |
70.4 |
C2 |
C1 |
C14 |
H14 |
171.5 |
305.7 |
H11 |
C1 |
C2 |
H12 |
124.2 |
239.9 |
C4 |
C2 |
C1 |
C3 |
180.1 |
180.1 |
C1 |
C2 |
C4 |
C5 |
179.7 |
180.0 |
C1 |
C2 |
C4 |
H4 |
359.7 |
360.0 |
C1 |
C2 |
C3 |
C6 |
180.4 |
179.7 |
C1 |
C2 |
C3 |
H3 |
0.5 |
0.1 |
C2 |
C1 |
C14 |
H11 |
244.2 |
120.0 |
C2 |
C1 |
C14 |
H12 |
120.0 |
240.0 |
C14 |
C1 |
C2 |
C4 |
90.0 |
90.0 |
C14 |
C1 |
C2 |
C3 |
269.9 |
270.0 |
H11 |
C1 |
C14 |
H12 |
235.8 |
120.1 |
N1 |
C7 |
C14 |
C1 |
226.1 |
242.4 |
C9 |
S1 |
C14 |
C1 |
139.4 |
117.6 |
C7 |
C14 |
C1 |
S1 |
111.7 |
110.5 |
C7 |
C14 |
C1 |
H14 |
236.5 |
235.3 |
C1 |
C14 |
C7 |
O1 |
49.8 |
62.4 |
S1 |
C14 |
C1 |
H14 |
124.8 |
124.8 |
C2 |
C1 |
H11 |
C14 |
125.1 |
240.1 |
C2 |
C1 |
H11 |
H12 |
242.5 |
120.1 |
H11 |
C1 |
C2 |
C4 |
334.2 |
210.0 |
H11 |
C1 |
C2 |
C3 |
154.1 |
29.9 |
C14 |
C1 |
H11 |
H12 |
117.4 |
240.0 |
H11 |
C1 |
C14 |
C7 |
163.8 |
61.0 |
H11 |
C1 |
C14 |
S1 |
52.1 |
310.5 |
H11 |
C1 |
C14 |
H14 |
287.3 |
185.7 |
C2 |
C1 |
H12 |
C14 |
232.7 |
119.9 |
C2 |
C1 |
H12 |
H11 |
116.4 |
239.9 |
H12 |
C1 |
C2 |
C4 |
210.0 |
330.1 |
H12 |
C1 |
C2 |
C3 |
29.9 |
150.0 |
C14 |
C1 |
H12 |
H11 |
243.7 |
120.0 |
H12 |
C1 |
C14 |
C7 |
288.0 |
300.9 |
H12 |
C1 |
C14 |
S1 |
176.3 |
190.4 |
H12 |
C1 |
C14 |
H14 |
51.5 |
65.6 |
C4 |
C2 |
C1 |
C14 |
90.0 |
90.0 |
C4 |
C2 |
C1 |
H11 |
334.2 |
210.0 |
C4 |
C2 |
C1 |
H12 |
210.0 |
330.1 |
C1 |
C2 |
C4 |
C3 |
179.9 |
179.9 |
C4 |
C2 |
C3 |
C6 |
0.3 |
359.7 |
C4 |
C2 |
C3 |
H3 |
180.3 |
180.0 |
C5 |
C4 |
C2 |
H4 |
180.0 |
180.0 |
C2 |
C4 |
C5 |
C8 |
360.0 |
0.0 |
C2 |
C4 |
C5 |
H5 |
180.0 |
180.0 |
C3 |
C2 |
C1 |
C14 |
269.9 |
270.0 |
C3 |
C2 |
C1 |
H11 |
154.1 |
29.9 |
C3 |
C2 |
C1 |
H12 |
29.9 |
150.0 |
C1 |
C2 |
C3 |
C4 |
180.1 |
180.1 |
C3 |
C2 |
C4 |
C5 |
359.8 |
0.0 |
C3 |
C2 |
C4 |
H4 |
179.8 |
180.0 |
C8 |
C6 |
C3 |
C2 |
359.8 |
0.6 |
C2 |
C3 |
C6 |
CL2 |
179.6 |
180.0 |
C6 |
C3 |
C2 |
H3 |
180.0 |
179.6 |
C5 |
C4 |
C2 |
C3 |
359.8 |
0.0 |
C2 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
C8 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
C4 |
C5 |
C8 |
C6 |
0.2 |
0.3 |
C4 |
C5 |
C8 |
CL1 |
180.3 |
180.0 |
H4 |
C4 |
C2 |
C3 |
179.8 |
180.0 |
C2 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
C8 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
H5 |
360.0 |
360.0 |
C8 |
C5 |
C4 |
H4 |
180.0 |
180.0 |
C4 |
C5 |
C8 |
H5 |
180.0 |
180.0 |
C5 |
C8 |
C6 |
C3 |
359.9 |
359.4 |
C5 |
C8 |
C6 |
CL2 |
180.1 |
180.0 |
C6 |
C8 |
C5 |
CL1 |
179.8 |
180.3 |
H5 |
C5 |
C4 |
H4 |
360.0 |
360.0 |
C4 |
C5 |
H5 |
C8 |
180.0 |
180.0 |
H5 |
C5 |
C8 |
C6 |
180.2 |
180.3 |
H5 |
C5 |
C8 |
CL1 |
0.3 |
0.1 |
C2 |
C3 |
C6 |
C8 |
359.8 |
0.6 |
C6 |
C8 |
C5 |
H5 |
180.2 |
180.3 |
C5 |
C8 |
C6 |
CL1 |
180.2 |
179.7 |
C3 |
C6 |
C8 |
CL2 |
179.8 |
179.4 |
C8 |
C6 |
C3 |
H3 |
179.8 |
180.3 |
C2 |
C3 |
C6 |
H3 |
180.0 |
180.4 |
C8 |
C6 |
C3 |
CL2 |
180.2 |
180.6 |
C3 |
C6 |
C8 |
CL1 |
179.8 |
179.7 |
C8 |
C6 |
CL2 |
C3 |
179.8 |
179.4 |
CL2 |
C6 |
C8 |
CL1 |
360.0 |
0.2 |
CL2 |
C6 |
C3 |
H3 |
359.6 |
359.7 |
CL1 |
C8 |
C5 |
H5 |
0.3 |
0.1 |
C5 |
C8 |
CL1 |
C6 |
179.8 |
180.3 |
CL1 |
C8 |
C6 |
C3 |
179.8 |
179.7 |
CL1 |
C8 |
C6 |
CL2 |
360.0 |
0.2 |
C9 |
N1 |
N22 |
H22 |
337.4 |
269.9 |
N22 |
N1 |
C9 |
C7 |
181.6 |
180.0 |
C9 |
N1 |
C7 |
C14 |
1.1 |
360.0 |
C9 |
N1 |
C7 |
O1 |
177.4 |
180.0 |
S1 |
C9 |
N1 |
S2 |
177.3 |
180.0 |
N1 |
C9 |
S1 |
C14 |
338.0 |
360.0 |
C7 |
N1 |
N22 |
H22 |
159.2 |
89.9 |
N22 |
N1 |
C7 |
C9 |
178.3 |
180.0 |
C1 |
C14 |
C7 |
N1 |
226.1 |
242.4 |
C7 |
N1 |
C9 |
S1 |
15.9 |
0.0 |
C7 |
N1 |
C9 |
S2 |
198.6 |
180.0 |
N1 |
C7 |
C14 |
S1 |
343.9 |
360.0 |
N1 |
C7 |
C14 |
H14 |
108.0 |
117.8 |
C14 |
C7 |
N1 |
O1 |
183.6 |
180.0 |
C1 |
C14 |
S1 |
C9 |
139.4 |
117.6 |
S1 |
C9 |
N1 |
C7 |
15.9 |
0.0 |
N1 |
C9 |
S1 |
S2 |
182.6 |
180.0 |
C7 |
C14 |
S1 |
C9 |
20.1 |
0.0 |
C9 |
S1 |
C14 |
H14 |
257.3 |
242.3 |
S2 |
C9 |
N1 |
C7 |
198.6 |
180.0 |
N1 |
C9 |
S2 |
S1 |
177.0 |
180.1 |
S2 |
C9 |
S1 |
C14 |
155.4 |
180.0 |
C7 |
C14 |
C1 |
H11 |
163.8 |
61.0 |
C7 |
C14 |
C1 |
H12 |
288.0 |
300.9 |
C1 |
C14 |
C7 |
S1 |
242.2 |
242.4 |
C1 |
C14 |
C7 |
H14 |
118.1 |
124.6 |
N1 |
C7 |
C14 |
O1 |
176.3 |
180.0 |
C9 |
S1 |
C14 |
C7 |
20.1 |
0.0 |
S1 |
C14 |
C7 |
H14 |
235.9 |
242.2 |
S1 |
C14 |
C1 |
H11 |
52.1 |
310.5 |
S1 |
C14 |
C1 |
H12 |
176.3 |
190.4 |
C1 |
C14 |
S1 |
C7 |
119.3 |
117.6 |
C1 |
C14 |
S1 |
H14 |
242.1 |
235.4 |
C14 |
S1 |
C9 |
S2 |
155.4 |
180.0 |
C7 |
C14 |
S1 |
H14 |
122.8 |
117.7 |
S1 |
C14 |
C7 |
O1 |
167.5 |
180.0 |
H14 |
C14 |
C1 |
H11 |
287.3 |
185.7 |
H14 |
C14 |
C1 |
H12 |
51.5 |
65.6 |
C1 |
C14 |
H14 |
C7 |
237.0 |
235.3 |
C1 |
C14 |
H14 |
S1 |
121.5 |
124.7 |
C7 |
C14 |
H14 |
S1 |
244.5 |
249.4 |
H14 |
C14 |
C7 |
O1 |
291.7 |
297.8 |
N1 |
C7 |
O1 |
C14 |
183.9 |
180.0 |
O1 |
C7 |
C14 |
S1 |
167.5 |
180.0 |
O1 |
C7 |
C14 |
H14 |
291.7 |
297.8 |
C2 |
C3 |
H3 |
C6 |
180.0 |
179.6 |
H3 |
C3 |
C6 |
CL2 |
359.6 |
359.7 |