PDB Chemical Component 5E5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5E5
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C13 |
C12 |
1.393 |
1.385 |
C13 |
C14 |
1.390 |
1.382 |
C1 |
C2 |
1.516 |
1.507 |
C12 |
C11 |
1.403 |
1.398 |
C14 |
N15 |
1.327 |
1.319 |
C7 |
C6 |
1.416 |
1.411 |
C7 |
C8 |
1.401 |
1.378 |
C2 |
C6 |
1.428 |
1.380 |
C2 |
N3 |
1.309 |
1.341 |
C11 |
C8 |
1.484 |
1.484 |
C11 |
C16 |
1.402 |
1.394 |
C6 |
C5 |
1.420 |
1.474 |
N15 |
C16 |
1.322 |
1.317 |
C8 |
N9 |
1.330 |
1.337 |
N3 |
N4 |
1.406 |
1.400 |
C5 |
N4 |
1.374 |
1.319 |
C5 |
C10 |
1.390 |
1.411 |
N9 |
C10 |
1.313 |
1.308 |
C7 |
H1 |
1.080 |
1.079 |
C10 |
H2 |
1.080 |
1.081 |
N3 |
H3 |
1.000 |
0.970 |
C1 |
H4 |
1.100 |
1.090 |
C1 |
H5 |
1.100 |
1.090 |
C1 |
H6 |
1.100 |
1.090 |
C12 |
H7 |
1.080 |
1.080 |
C13 |
H8 |
1.080 |
1.080 |
C14 |
H9 |
1.080 |
1.080 |
C16 |
H10 |
1.080 |
1.081 |
Bond Angles for 5E5
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C13 |
C12 |
H7 |
121.0 |
120.9 |
C13 |
C14 |
N15 |
121.3 |
121.1 |
C14 |
C13 |
H8 |
120.4 |
120.4 |
C13 |
C14 |
H9 |
119.3 |
119.5 |
C12 |
C11 |
C16 |
119.4 |
119.0 |
C14 |
N15 |
C16 |
121.6 |
121.8 |
N15 |
C14 |
H9 |
119.3 |
119.4 |
C6 |
C7 |
C8 |
118.3 |
118.4 |
C7 |
C6 |
C2 |
136.2 |
135.7 |
C7 |
C6 |
C5 |
117.7 |
117.8 |
C6 |
C7 |
H1 |
120.8 |
120.8 |
C7 |
C8 |
N9 |
121.3 |
122.2 |
C8 |
C7 |
H1 |
120.8 |
120.8 |
N3 |
C2 |
C6 |
108.8 |
107.8 |
C2 |
C6 |
C5 |
106.1 |
106.5 |
C2 |
N3 |
N4 |
110.0 |
110.0 |
C2 |
N3 |
H3 |
125.0 |
125.0 |
C11 |
C16 |
N15 |
120.5 |
120.6 |
C11 |
C16 |
H10 |
119.7 |
119.7 |
C6 |
C5 |
N4 |
107.3 |
106.7 |
N15 |
C16 |
H10 |
119.8 |
119.7 |
N4 |
N3 |
H3 |
125.0 |
125.0 |
C5 |
C10 |
H2 |
119.5 |
120.0 |
N9 |
C10 |
H2 |
119.5 |
119.9 |
H4 |
C1 |
H5 |
109.4 |
109.4 |
H4 |
C1 |
H6 |
109.5 |
109.5 |
H5 |
C1 |
H6 |
109.5 |
109.5 |
Torsion Angles for 5E5
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C13 |
C12 |
C11 |
C16 |
0.5 |
0.3 |
C14 |
C13 |
C12 |
H7 |
180.1 |
180.0 |
C13 |
C14 |
N15 |
C16 |
0.8 |
359.7 |
N15 |
C14 |
C13 |
H9 |
180.0 |
180.0 |
C1 |
C2 |
C6 |
C5 |
178.6 |
180.0 |
C1 |
C2 |
N3 |
N4 |
181.0 |
180.0 |
C1 |
C2 |
N3 |
H3 |
1.0 |
0.0 |
C12 |
C11 |
C16 |
N15 |
359.5 |
359.5 |
C12 |
C11 |
C16 |
H10 |
179.5 |
179.7 |
N15 |
C14 |
C13 |
H8 |
179.2 |
180.0 |
C13 |
C14 |
N15 |
H9 |
180.0 |
180.0 |
C11 |
C16 |
N15 |
C14 |
359.8 |
0.6 |
C14 |
N15 |
C16 |
H10 |
179.8 |
180.3 |
C6 |
C7 |
C8 |
N9 |
359.8 |
0.0 |
C8 |
C7 |
C6 |
H1 |
180.0 |
180.2 |
N3 |
C2 |
C6 |
C7 |
181.1 |
180.0 |
C2 |
C6 |
C7 |
C5 |
178.9 |
180.1 |
C7 |
C6 |
C5 |
N4 |
179.5 |
180.0 |
C8 |
C7 |
C6 |
C2 |
179.1 |
180.0 |
C8 |
C7 |
C6 |
C5 |
0.2 |
360.0 |
C6 |
C7 |
C8 |
H1 |
180.0 |
179.8 |
C2 |
C6 |
C7 |
C8 |
179.1 |
180.0 |
C7 |
C6 |
C2 |
C5 |
181.0 |
179.9 |
C2 |
C6 |
C7 |
H1 |
359.1 |
359.8 |
C6 |
C2 |
N3 |
N4 |
359.6 |
360.0 |
C6 |
C2 |
N3 |
H3 |
179.6 |
180.0 |
C2 |
C6 |
C5 |
N4 |
0.3 |
360.0 |
C7 |
C6 |
C2 |
N3 |
181.1 |
180.0 |
N3 |
C2 |
C6 |
C5 |
0.0 |
0.0 |
N4 |
N3 |
C2 |
H3 |
180.0 |
180.0 |
C11 |
C8 |
C7 |
H1 |
0.5 |
0.2 |
C14 |
N15 |
C16 |
C11 |
359.8 |
0.6 |
N15 |
C16 |
C11 |
H10 |
180.0 |
179.7 |
C5 |
C6 |
C7 |
C8 |
0.2 |
360.0 |
C7 |
C6 |
C5 |
C2 |
179.2 |
180.1 |
C5 |
C6 |
C7 |
H1 |
180.2 |
179.7 |
C6 |
C5 |
C10 |
H2 |
180.7 |
180.0 |
C16 |
N15 |
C14 |
H9 |
180.8 |
179.7 |
C11 |
C16 |
N15 |
H10 |
180.0 |
180.3 |
N9 |
C8 |
C7 |
H1 |
179.8 |
180.3 |
C8 |
N9 |
C10 |
H2 |
179.4 |
180.0 |
N4 |
N3 |
C2 |
C6 |
359.6 |
360.0 |
C2 |
N3 |
N4 |
H3 |
180.0 |
180.0 |
C6 |
C5 |
N4 |
N3 |
359.4 |
0.0 |
C5 |
N4 |
N3 |
H3 |
180.6 |
180.0 |
N4 |
C5 |
C10 |
H2 |
0.7 |
359.9 |
C7 |
C6 |
C5 |
C10 |
359.6 |
0.0 |
C2 |
C6 |
C5 |
C10 |
180.4 |
180.0 |
N9 |
C10 |
C5 |
H2 |
180.0 |
180.1 |
C7 |
C8 |
N9 |
C10 |
0.4 |
360.0 |
C5 |
C10 |
N9 |
H2 |
180.0 |
179.9 |
C6 |
C7 |
H1 |
C8 |
180.0 |
180.2 |
H1 |
C7 |
C6 |
C2 |
359.1 |
359.8 |
H1 |
C7 |
C6 |
C5 |
180.2 |
179.7 |
H1 |
C7 |
C8 |
N9 |
179.8 |
180.3 |
H3 |
N3 |
C2 |
C6 |
179.6 |
180.0 |
C2 |
N3 |
H3 |
N4 |
180.0 |
180.0 |
H5 |
C1 |
H4 |
H6 |
120.0 |
120.1 |
H4 |
C1 |
H5 |
H6 |
240.0 |
239.9 |
H4 |
C1 |
H6 |
H5 |
120.0 |
120.0 |
H7 |
C12 |
C11 |
C16 |
180.4 |
180.2 |
H8 |
C13 |
C12 |
H7 |
0.2 |
0.1 |
H8 |
C13 |
C14 |
N15 |
179.2 |
180.0 |
H8 |
C13 |
C14 |
H9 |
359.2 |
0.0 |
C13 |
C14 |
H9 |
N15 |
180.0 |
180.0 |
H9 |
C14 |
C13 |
H8 |
359.2 |
0.0 |
H9 |
C14 |
N15 |
C16 |
180.8 |
179.7 |
C11 |
C16 |
H10 |
N15 |
180.0 |
179.7 |