PDB Chemical Component 5DS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5DS

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	N1	1.443	1.464
C1	H11	1.100	1.090
C1	H12	1.100	1.091
C1	H13	1.100	1.090
N1	C2	1.429	1.466
N1	C3	1.401	1.387
C2	H21	1.100	1.090
C2	H22	1.099	1.090
C2	H23	1.100	1.090
C3	S1	1.748	1.791
C3	N2	1.444	1.327
S1	C4	1.782	1.791
N2	N3	1.410	1.261
N3	C4	1.412	1.317
C4	C5	1.476	1.507
C5	N4	1.426	1.469
C5	S2	1.721	1.814
C5	H5	1.100	1.090
N4	HN41	1.001	1.008
N4	HN42	1.000	1.009
S2	O2	1.420	1.421
S2	O3	1.393	1.421
S2	N5	1.401	1.656
N5	HN51	1.000	0.970
N5	HN52	1.000	0.970

Bond Angles for 5DS

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N1	C1	H11	109.4	109.5
N1	C1	H12	109.5	109.5
N1	C1	H13	109.5	109.5
C1	N1	C2	124.6	120.0
C1	N1	C3	118.0	120.0
H11	C1	H12	109.5	109.4
H11	C1	H13	109.5	109.5
H12	C1	H13	109.5	109.4
C2	N1	C3	117.4	120.0
N1	C2	H21	109.4	109.5
N1	C2	H22	109.5	109.4
N1	C2	H23	109.5	109.4
N1	C3	S1	115.6	130.1
N1	C3	N2	119.9	130.0
H21	C2	H22	109.5	109.5
H21	C2	H23	109.5	109.5
H22	C2	H23	109.5	109.5
S1	C3	N2	101.0	99.9
C3	S1	C4	91.7	96.1
C3	N2	N3	115.2	121.8
S1	C4	N3	104.6	100.0
S1	C4	C5	113.1	130.0
N2	N3	C4	111.0	122.3
N3	C4	C5	123.8	130.0
C4	C5	N4	112.3	109.5
C4	C5	S2	112.6	109.5
C4	C5	H5	110.1	109.4
N4	C5	S2	120.0	109.5
N4	C5	H5	100.1	109.5
C5	N4	HN41	109.5	106.7
C5	N4	HN42	109.5	106.7
S2	C5	H5	99.6	109.5
C5	S2	O2	116.7	111.6
C5	S2	O3	110.1	111.6
C5	S2	N5	113.3	103.1
HN41	N4	HN42	109.5	106.8
O2	S2	O3	103.3	122.1
O2	S2	N5	114.5	102.8
O3	S2	N5	96.2	102.8
S2	N5	HN51	109.5	120.0
S2	N5	HN52	109.5	120.0
HN51	N5	HN52	109.5	120.0

Torsion Angles for 5DS

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H11	C1	N1	H12	120.0	240.0
H11	C1	N1	H13	240.0	120.1
H12	C1	N1	H13	120.0	240.0
C2	N1	C1	C3	179.7	180.1
C1	N1	C2	H21	184.4	360.0
C1	N1	C2	H22	64.4	120.0
C1	N1	C2	H23	304.4	239.9
C1	N1	C3	S1	151.4	180.0
C1	N1	C3	N2	30.1	359.7
N1	C1	H11	H12	240.0	120.0
N1	C1	H11	H13	120.0	239.9
H11	C1	N1	C2	196.4	0.1
H11	C1	N1	C3	16.6	180.0
H12	C1	H11	H13	240.0	120.0
N1	C1	H12	H11	120.0	240.0
N1	C1	H12	H13	240.0	120.0
H12	C1	N1	C2	76.4	120.0
H12	C1	N1	C3	256.6	299.9
H11	C1	H12	H13	120.0	240.0
N1	C1	H13	H11	240.1	120.1
N1	C1	H13	H12	120.0	240.0
H13	C1	N1	C2	316.3	240.0
H13	C1	N1	C3	136.6	59.9
H11	C1	H13	H12	239.9	120.0
C2	N1	C1	H11	196.4	0.1
C2	N1	C1	H12	76.4	120.0
C2	N1	C1	H13	316.3	240.0
C1	N1	C2	C3	180.3	179.9
C2	N1	C3	S1	331.7	360.0
C2	N1	C3	N2	210.4	179.7
H21	C2	N1	H22	120.0	240.0
H21	C2	N1	H23	240.0	120.1
H22	C2	N1	H23	120.0	240.0
C3	N1	C1	H11	16.6	180.0
C3	N1	C1	H12	256.6	299.9
C3	N1	C1	H13	136.6	59.9
C1	N1	C3	C2	179.8	180.1
C3	N1	C2	H21	4.2	180.1
C3	N1	C2	H22	244.1	300.0
C3	N1	C2	H23	124.2	60.0
S1	C3	N1	N2	121.3	180.3
N1	C3	S1	C4	193.1	180.0
N1	C3	N2	N3	158.3	179.8
H21	C2	N1	C3	4.2	180.1
N1	C2	H21	H22	240.0	120.0
N1	C2	H21	H23	120.0	240.0
H22	C2	H21	H23	240.0	120.0
H22	C2	N1	C3	244.1	300.0
N1	C2	H22	H21	120.0	240.0
N1	C2	H22	H23	240.0	119.9
H21	C2	H22	H23	120.0	239.9
H23	C2	N1	C3	124.2	60.0
N1	C2	H23	H21	240.0	120.0
N1	C2	H23	H22	120.0	240.1
H21	C2	H23	H22	240.0	120.0
N1	C3	S1	N2	229.0	179.8
S1	C3	N2	N3	30.1	359.6
C3	S1	C4	N3	35.0	360.0
C3	S1	C4	C5	172.3	180.0
N1	C3	N2	S1	128.2	180.2
N2	C3	S1	C4	324.1	0.2
C3	N2	N3	C4	354.8	0.5
C4	S1	C3	N2	324.1	0.2
N2	N3	C4	S1	337.8	359.8
N3	C4	S1	C5	222.6	180.0
S1	C4	C5	N4	237.6	330.0
S1	C4	C5	S2	98.5	210.0
S1	C4	C5	H5	348.2	90.0
S1	C4	N3	N2	337.8	359.8
N2	N3	C4	C5	206.4	179.8
S1	C4	N3	C5	131.4	180.0
N3	C4	C5	N4	5.5	150.0
N3	C4	C5	S2	226.4	29.9
N3	C4	C5	H5	116.2	270.0
S1	C4	C5	N3	232.1	180.0
N4	C5	C4	S2	139.1	120.0
N4	C5	C4	H5	249.3	240.0
C4	C5	N4	HN41	130.9	186.2
C4	C5	N4	HN42	10.9	300.0
S2	C5	C4	H5	110.2	119.9
C4	C5	S2	O2	34.9	70.3
C4	C5	S2	O3	277.7	289.8
C4	C5	S2	N5	171.2	180.0
C4	C5	N4	S2	224.2	240.0
C4	C5	N4	H5	116.8	120.0
S2	C5	N4	H5	252.6	240.0
N4	C5	S2	O2	259.3	310.3
N4	C5	S2	O3	142.0	169.7
N4	C5	S2	N5	35.6	60.0
HN41	N4	C5	HN42	120.0	246.2
C4	C5	S2	N4	135.6	120.0
C4	C5	S2	H5	243.4	240.1
N4	C5	S2	H5	107.7	120.1
S2	C5	N4	HN41	266.7	306.2
S2	C5	N4	HN42	146.6	60.0
O2	S2	C5	O3	117.3	140.6
O2	S2	C5	N5	223.7	250.3
O3	S2	C5	N5	106.4	109.7
C5	S2	N5	HN51	82.5	359.9
C5	S2	N5	HN52	322.5	180.1
C4	C5	H5	N4	241.6	240.0
C4	C5	H5	S2	118.5	119.9
N4	C5	H5	S2	236.9	240.0
H5	C5	N4	HN41	14.1	66.2
H5	C5	N4	HN42	254.1	180.1
H5	C5	S2	O2	151.6	190.2
H5	C5	S2	O3	34.3	49.7
H5	C5	S2	N5	287.9	299.9
HN41	N4	C5	S2	266.7	306.2
HN41	N4	C5	H5	14.1	66.2
C5	N4	HN41	HN42	240.0	113.8
HN42	N4	C5	S2	146.6	60.0
HN42	N4	C5	H5	254.1	180.1
C5	N4	HN42	HN41	120.0	246.2
O2	S2	C5	H5	151.6	190.2
C5	S2	O2	O3	239.1	224.2
C5	S2	O2	N5	135.8	109.9
O3	S2	O2	N5	256.7	245.7
O2	S2	N5	HN51	219.8	116.1
O2	S2	N5	HN52	99.8	296.2
O3	S2	C5	H5	34.3	49.7
C5	S2	O3	O2	125.3	135.8
C5	S2	O3	N5	242.4	250.1
O2	S2	O3	N5	117.1	114.3
O3	S2	N5	HN51	327.5	243.8
O3	S2	N5	HN52	207.5	63.9
N5	S2	C5	H5	287.9	299.9
C5	S2	N5	O2	222.7	243.8
C5	S2	N5	O3	115.0	116.2
O2	S2	N5	O3	252.3	232.3
HN51	N5	S2	HN52	120.0	179.9
S2	N5	HN51	HN52	240.0	180.1
S2	N5	HN52	HN51	120.0	179.9