PDB Chemical Component 5DI

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5DI

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.342	1.514
C1	O5	1.461	1.431
C2	O2	1.334	1.208
C2	C3	1.499	1.515
C3	O3	1.433	1.429
C3	C4	1.530	1.535
C4	O4	1.425	1.429
C4	C5	1.544	1.531
C5	O5	1.422	1.428
C5	C6	1.525	1.530
C5	F1	1.316	1.399
C6	O6	1.438	1.430
C1	H11C	1.100	1.090
C1	H12C	1.100	1.090
C3	H3C	1.100	1.090
O3	H3O	0.950	0.967
C4	H4C	1.100	1.090
O4	H4O	0.950	0.967
C6	H61C	1.100	1.090
C6	H62C	1.100	1.090
O6	H6O	0.950	0.967

Bond Angles for 5DI

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O5	122.3	108.3
C1	C2	O2	120.1	121.1
C1	C2	C3	118.5	117.8
C2	C1	H11C	106.2	109.7
C2	C1	H12C	106.2	109.7
C1	O5	C5	122.3	114.1
O5	C1	H11C	106.2	109.7
O5	C1	H12C	106.2	109.7
O2	C2	C3	121.3	121.1
C2	C3	O3	109.4	109.8
C2	C3	C4	110.0	107.9
C2	C3	H3C	108.6	109.7
O3	C3	C4	111.1	109.8
O3	C3	H3C	109.5	109.8
C3	O3	H3O	109.5	113.9
C3	C4	O4	106.3	109.6
C3	C4	C5	112.8	109.0
C4	C3	H3C	108.2	109.8
C3	C4	H4C	107.9	109.5
O4	C4	C5	112.8	109.5
O4	C4	H4C	109.3	109.5
C4	O4	H4O	109.5	114.0
C4	C5	O5	110.5	109.8
C4	C5	C6	114.7	109.4
C4	C5	F1	111.8	109.4
C5	C4	H4C	107.7	109.7
O5	C5	C6	107.7	109.4
O5	C5	F1	106.1	109.4
C6	C5	F1	105.7	109.3
C5	C6	O6	113.7	109.5
C5	C6	H61C	108.4	109.5
C5	C6	H62C	108.4	109.5
O6	C6	H61C	108.4	109.5
O6	C6	H62C	108.4	109.5
C6	O6	H6O	109.5	114.0
H11C	C1	H12C	109.4	109.7
H61C	C6	H62C	109.5	109.5

Torsion Angles for 5DI

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O5	C5	353.6	55.6
O5	C1	C2	H11C	238.2	240.3
O5	C1	C2	H12C	121.8	119.7
O2	C2	C1	C3	179.1	180.1
C1	C2	C3	O3	200.3	288.9
C1	C2	C3	C4	322.6	48.5
C1	C2	C3	H3C	80.9	168.1
H11C	C1	C2	H12C	243.6	239.4
O5	C1	C2	O2	192.8	131.4
O5	C1	C2	C3	13.6	311.3
C2	C1	O5	H11C	121.8	119.8
C2	C1	O5	H12C	238.2	240.3
C4	C5	O5	C1	23.1	295.2
C1	O5	C5	C6	257.1	175.1
C1	O5	C5	F1	144.4	55.3
H11C	C1	O5	H12C	116.5	120.5
O2	C2	C1	O5	192.8	131.4
C1	C2	O2	C3	180.9	179.9
O2	C2	C1	H11C	314.5	251.2
O2	C2	C1	H12C	71.0	11.7
O2	C2	C3	O3	21.2	108.8
O2	C2	C3	C4	143.5	228.4
O2	C2	C3	H3C	261.7	348.0
C3	C2	C1	O5	13.6	311.3
C1	C2	C3	O2	179.1	180.1
C3	C2	C1	H11C	135.4	71.0
C3	C2	C1	H12C	251.8	191.6
O3	C3	C2	C4	237.7	240.4
O3	C3	C2	H3C	119.4	120.8
C2	C3	O3	H3O	350.3	300.0
C2	C3	C4	O4	178.5	67.9
C2	C3	C4	C5	54.5	308.1
C4	C3	C2	H3C	241.8	240.4
C2	C3	C4	H4C	295.6	188.1
C2	C3	O3	C4	121.7	118.5
C2	C3	O3	H3C	241.1	239.3
O3	C3	C4	O4	299.8	187.6
O3	C3	C4	C5	175.8	67.7
C4	C3	O3	H3C	119.5	120.8
O3	C3	C4	H4C	56.9	307.7
C2	C3	C4	O3	238.7	240.4
C2	C3	C4	H3C	118.5	119.6
O3	C3	C4	H3C	239.8	239.2
C4	C3	O3	H3O	228.7	181.5
O4	C4	C3	C5	124.0	119.8
O4	C4	C3	H4C	242.9	239.8
C3	C4	O4	H4O	180.0	60.0
C3	C4	C5	O5	312.7	61.3
C3	C4	C5	C6	74.6	181.5
C3	C4	C5	F1	194.8	301.2
C5	C4	C3	H4C	118.9	120.0
C3	C4	O4	C5	236.0	240.5
O4	C4	C3	H3C	60.0	308.4
C3	C4	O4	H4C	116.2	120.1
O4	C4	C5	O5	192.3	301.5
O4	C4	C5	C6	314.2	61.6
O4	C4	C5	F1	74.5	181.4
C5	C4	O4	H4C	240.2	239.7
C1	O5	C5	C4	23.1	295.2
C3	C4	C5	O4	120.3	119.9
C5	C4	C3	H3C	296.0	188.5
C3	C4	C5	H4C	241.1	240.1
O4	C4	C5	H4C	120.7	120.2
C5	C4	O4	H4O	304.0	179.5
O5	C5	C4	C6	238.1	239.9
O5	C5	C4	F1	117.9	120.1
C6	C5	C4	F1	239.8	240.2
C4	C5	C6	O6	291.3	60.0
C4	C5	C6	H61C	51.9	180.0
C4	C5	C6	H62C	170.6	300.0
C5	O5	C1	H11C	231.9	295.9
C5	O5	C1	H12C	115.4	175.3
C4	C5	O5	C6	125.9	120.1
C4	C5	O5	F1	238.7	239.9
O5	C5	C4	H4C	71.6	181.2
C6	C5	O5	F1	112.8	119.8
O5	C5	C6	O6	54.7	180.4
O5	C5	C6	H61C	175.3	300.3
O5	C5	C6	H62C	294.0	60.4
C4	C5	C6	O5	236.6	239.6
C4	C5	C6	F1	123.5	119.8
C6	C5	C4	H4C	193.5	301.4
O5	C5	C6	F1	246.9	240.2
O6	C6	C5	H61C	239.4	240.0
O6	C6	C5	H62C	120.7	120.0
C5	C6	O6	H6O	180.0	180.0
H61C	C6	C5	H62C	241.3	240.0
C4	C5	F1	O5	120.5	120.4
C4	C5	F1	C6	234.7	240.2
F1	C5	C4	H4C	313.8	61.1
O5	C5	F1	C6	114.2	119.8
F1	C5	C6	O6	167.7	300.2
F1	C5	C6	H61C	288.3	60.2
F1	C5	C6	H62C	47.1	180.2
O6	C6	C5	F1	167.7	300.2
C5	C6	O6	H61C	120.6	120.0
C5	C6	O6	H62C	239.3	240.0
H61C	C6	O6	H62C	118.7	120.0
C2	C1	H11C	O5	228.5	241.1
H11C	C1	C2	O2	314.5	251.2
H11C	C1	C2	C3	135.4	71.0
C2	C1	H11C	H12C	114.2	120.6
H11C	C1	O5	C5	231.9	295.9
O5	C1	H11C	H12C	245.7	239.5
C2	C1	H12C	O5	131.5	118.9
H12C	C1	C2	O2	71.0	11.7
H12C	C1	C2	C3	251.8	191.6
C2	C1	H12C	H11C	245.8	239.4
H12C	C1	O5	C5	115.4	175.3
O5	C1	H12C	H11C	114.3	120.5
C2	C3	H3C	O3	119.4	120.8
C2	C3	H3C	C4	240.6	241.5
O3	C3	H3C	C4	121.3	120.8
H3C	C3	O3	H3O	109.2	60.7
H3C	C3	C4	O4	60.0	308.4
H3C	C3	C4	C5	296.0	188.5
H3C	C3	C4	H4C	177.2	68.5
H3O	O3	C3	C4	228.7	181.5
H3O	O3	C3	H3C	109.2	60.7
C3	C4	H4C	O4	244.9	239.8
C3	C4	H4C	C5	122.0	119.6
H4C	C4	C3	H3C	177.2	68.5
O4	C4	H4C	C5	237.1	239.8
H4C	C4	O4	H4O	63.8	299.8
H4C	C4	C5	O5	71.6	181.2
H4C	C4	C5	C6	193.5	301.4
H4C	C4	C5	F1	313.8	61.1
H4O	O4	C4	C5	304.0	179.5
H4O	O4	C4	H4C	63.8	299.8
H61C	C6	C5	F1	288.3	60.2
C5	C6	H61C	O6	236.1	240.0
C5	C6	H61C	H62C	118.1	120.0
O6	C6	H61C	H62C	242.0	240.0
H61C	C6	O6	H6O	59.3	60.1
H62C	C6	C5	F1	47.1	180.2
C5	C6	H62C	O6	123.9	120.0
C5	C6	H62C	H61C	241.9	240.0
O6	C6	H62C	H61C	118.0	120.0
H62C	C6	O6	H6O	300.6	300.0
H6O	O6	C6	H61C	59.3	60.1
H6O	O6	C6	H62C	300.6	300.0