PDB Chemical Component 5DE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5DE

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O19 C15 1.209 1.216
C15 O16 1.333 1.347
C15 C7 1.501 1.472
O16 C17 1.442 1.452
C17 C18 1.538 1.529
C17 H171 1.115 1.089
C17 H172 1.115 1.090
C18 H181 1.115 1.090
C18 H182 1.115 1.090
C18 H183 1.115 1.090
C7 C8 1.397 1.413
C7 C5 1.396 1.382
C8 N10 1.337 1.304
C8 C9 1.521 1.507
N10 N4 1.326 1.400
C9 H91 1.115 1.091
C9 H92 1.115 1.090
C9 H93 1.115 1.090
C5 C6 1.523 1.508
C5 N4 1.339 1.343
C6 H61 1.115 1.090
C6 H62 1.115 1.090
C6 H63 1.115 1.090
N4 C3 1.341 1.402
C3 C2 1.408 1.388
C3 C11 1.406 1.388
C2 C1 1.404 1.380
C2 H2 1.103 1.080
C1 C13 1.419 1.389
C1 H1 1.103 1.080
C11 C12 1.392 1.381
C11 H11 1.103 1.080
C12 C13 1.392 1.388
C12 H12 1.103 1.080
C13 N14 1.346 1.397
N14 H141 1.020 0.970
N14 H142 1.020 0.970

Bond Angles for 5DE

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O19 C15 O16 122.9 120.0
O19 C15 C7 119.7 120.0
O16 C15 C7 117.3 120.1
C15 O16 C17 117.6 120.0
C15 C7 C8 128.1 126.4
C15 C7 C5 127.1 126.5
O16 C17 C18 110.2 109.5
O16 C17 H171 112.0 109.5
O16 C17 H172 111.9 109.4
C18 C17 H171 111.9 109.5
C18 C17 H172 112.0 109.5
C17 C18 H181 111.9 109.5
C17 C18 H182 110.1 109.5
C17 C18 H183 112.0 109.5
H171 C17 H172 98.5 109.5
H181 C18 H182 112.0 109.4
H181 C18 H183 98.5 109.5
H182 C18 H183 111.9 109.5
C8 C7 C5 104.8 107.1
C7 C8 N10 109.0 108.1
C7 C8 C9 129.9 126.0
C7 C5 C6 127.1 126.2
C7 C5 N4 107.5 107.5
N10 C8 C9 121.1 125.9
C8 N10 N4 108.1 108.9
C8 C9 H91 105.1 109.5
C8 C9 H92 129.8 109.5
C8 C9 H93 105.1 109.5
N10 N4 C5 110.6 108.5
N10 N4 C3 123.5 125.7
H91 C9 H92 105.1 109.5
H91 C9 H93 104.1 109.4
H92 C9 H93 105.1 109.5
C6 C5 N4 125.4 126.3
C5 C6 H61 106.0 109.4
C5 C6 H62 127.1 109.5
C5 C6 H63 106.0 109.4
C5 N4 C3 125.9 125.8
H61 C6 H62 106.0 109.5
H61 C6 H63 103.4 109.5
H62 C6 H63 106.0 109.5
N4 C3 C2 123.3 120.0
N4 C3 C11 116.4 120.0
C2 C3 C11 120.3 120.0
C3 C2 C1 119.2 120.0
C3 C2 H2 120.5 120.0
C3 C11 C12 120.3 120.0
C3 C11 H11 120.3 120.0
C1 C2 H2 120.3 120.0
C2 C1 C13 120.0 120.0
C2 C1 H1 119.5 120.0
C13 C1 H1 120.5 120.0
C1 C13 C12 120.1 120.0
C1 C13 N14 121.5 120.0
C12 C11 H11 119.4 120.0
C11 C12 C13 120.1 120.0
C11 C12 H12 119.9 120.0
C13 C12 H12 120.0 120.0
C12 C13 N14 118.3 120.0
C13 N14 H141 107.9 120.0
C13 N14 H142 121.5 120.1
H141 N14 H142 108.0 120.0

Torsion Angles for 5DE

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O16 C15 O19 C7 183.0 180.0
O19 C15 O16 C17 3.6 0.0
O19 C15 C7 C8 356.4 90.1
O19 C15 C7 C5 178.3 269.7
O19 C15 O16 C7 177.1 180.0
O16 C15 C7 C8 173.6 270.1
O16 C15 C7 C5 355.5 89.7
C15 O16 C17 C18 180.8 179.9
C15 O16 C17 H171 55.5 60.0
C15 O16 C17 H172 306.0 299.9
O19 C15 C7 O16 182.8 180.0
C7 C15 O16 C17 186.5 180.0
C8 C7 C15 C5 178.1 180.4
C15 C7 C8 N10 181.1 180.0
C15 C7 C8 C9 1.7 360.0
C15 C7 C5 C6 358.2 0.4
C15 C7 C5 N4 179.1 179.9
C17 O16 C15 C7 186.5 180.0
C18 C17 O16 H171 125.2 120.0
C18 C17 O16 H172 234.7 240.0
O16 C17 C18 H181 54.7 180.0
O16 C17 C18 H182 180.0 300.0
O16 C17 C18 H183 305.2 60.0
H171 C17 O16 H172 109.5 120.0
O16 C17 C18 H171 234.7 240.0
O16 C17 C18 H172 125.2 120.0
H171 C17 C18 H172 250.5 239.9
H181 C18 C17 H182 234.7 240.1
H181 C18 C17 H183 109.5 120.0
H182 C18 C17 H183 234.8 240.0
O16 C17 H171 C18 124.3 120.0
O16 C17 H171 H172 242.1 240.0
C18 C17 H171 H172 117.9 120.0
H171 C17 C18 H181 180.0 300.0
H171 C17 C18 H182 305.3 59.9
H171 C17 C18 H183 70.5 180.0
O16 C17 H172 C18 235.7 240.0
O16 C17 H172 H171 117.9 120.0
C18 C17 H172 H171 242.1 240.0
H172 C17 C18 H181 289.5 60.1
H172 C17 C18 H182 54.8 180.0
H172 C17 C18 H183 180.0 300.0
H181 C18 C17 H171 180.0 300.0
H181 C18 C17 H172 289.5 60.1
C17 C18 H181 H182 124.2 120.0
C17 C18 H181 H183 242.1 240.0
H182 C18 H181 H183 117.9 119.9
H182 C18 C17 H171 305.3 59.9
H182 C18 C17 H172 54.8 180.0
C17 C18 H182 H181 234.8 240.0
C17 C18 H182 H183 125.3 120.1
H181 C18 H182 H183 250.5 240.1
H183 C18 C17 H171 70.5 180.0
H183 C18 C17 H172 180.0 300.0
C17 C18 H183 H181 117.9 120.0
C17 C18 H183 H182 235.8 239.9
H181 C18 H183 H182 117.9 119.9
C15 C7 C8 C5 181.5 179.7
C8 C7 C5 C6 179.7 180.0
C8 C7 C5 N4 0.6 359.6
N10 C8 C7 C9 179.5 180.0
C7 C8 N10 N4 0.1 360.0
C7 C8 C9 H91 54.8 90.0
C7 C8 C9 H92 180.0 210.0
C7 C8 C9 H93 305.3 330.1
C15 C7 C5 C8 178.5 180.3
C5 C7 C8 N10 359.6 0.3
C5 C7 C8 C9 180.1 180.3
N10 N4 C5 C7 359.4 0.4
C6 C5 C7 N4 179.1 180.5
C7 C5 C6 H61 54.7 269.4
C7 C5 C6 H62 180.0 29.5
C7 C5 C6 H63 305.3 149.5
C7 C5 N4 C3 182.0 180.2
N10 C8 C7 C5 359.6 0.3
C7 C8 N10 C9 180.5 180.0
N10 C8 C9 H91 235.4 270.0
N10 C8 C9 H92 0.6 30.0
N10 C8 C9 H93 125.9 150.1
C8 N10 N4 C5 0.3 359.7
C8 N10 N4 C3 177.8 180.0
C9 C8 C7 C5 180.1 180.3
C7 C8 C9 N10 179.4 180.0
C9 C8 N10 N4 179.6 180.0
H91 C9 C8 H92 234.7 240.0
H91 C9 C8 H93 109.5 119.9
H92 C9 C8 H93 234.8 239.9
C7 C5 N4 N10 359.4 0.4
N4 N10 C8 C9 179.6 180.0
C6 C5 N4 N10 180.3 179.9
C5 N4 N10 C3 182.5 179.8
N10 N4 C3 C2 84.2 139.7
N10 N4 C3 C11 264.9 320.1
C8 C9 H91 H92 139.5 120.0
C8 C9 H91 H93 249.7 240.0
H92 C9 H91 H93 110.2 120.0
C8 C9 H92 H91 234.8 240.0
C8 C9 H92 H93 125.3 120.1
H91 C9 H92 H93 250.5 240.1
C8 C9 H93 H91 110.3 120.0
C8 C9 H93 H92 220.5 239.9
H91 C9 H93 H92 110.2 119.9
C7 C5 C6 N4 181.0 179.4
N10 N4 C5 C6 180.3 179.9
C6 C5 N4 C3 2.8 359.7
H61 C6 C5 H62 234.7 240.0
H61 C6 C5 H63 109.4 119.9
H62 C6 C5 H63 234.8 240.0
C7 C5 N4 C6 179.2 180.5
N10 N4 C5 C3 177.5 180.2
N4 C5 C6 H61 233.7 90.0
N4 C5 C6 H62 359.0 210.0
N4 C5 C6 H63 124.3 330.0
C5 N4 C3 C2 261.3 320.0
C5 N4 C3 C11 82.0 140.4
H61 C6 C5 N4 233.7 90.0
C5 C6 H61 H62 137.4 120.1
C5 C6 H61 H63 248.7 240.1
H62 C6 H61 H63 111.3 120.0
H62 C6 C5 N4 359.0 210.0
C5 C6 H62 H61 234.7 240.0
C5 C6 H62 H63 125.3 120.0
H61 C6 H62 H63 250.6 240.0
H63 C6 C5 N4 124.3 330.0
C5 C6 H63 H61 111.3 119.9
C5 C6 H63 H62 222.6 240.0
H61 C6 H63 H62 111.3 120.0
N10 N4 C3 C5 182.9 179.7
C2 C3 N4 C11 179.3 179.7
N4 C3 C2 C1 180.7 179.7
N4 C3 C2 H2 0.7 0.2
N4 C3 C11 C12 180.2 180.0
N4 C3 C11 H11 0.2 359.9
N4 C3 C2 C11 180.7 180.3
C2 C3 C11 C12 0.8 0.4
C2 C3 C11 H11 180.8 180.3
C1 C2 C3 H2 180.0 179.5
C3 C2 C1 C13 359.2 0.5
C3 C2 C1 H1 179.2 180.3
N4 C3 C11 C2 179.4 179.7
C11 C3 C2 C1 360.0 359.4
C11 C3 C2 H2 180.0 179.9
C12 C11 C3 H11 180.0 180.1
C3 C11 C12 C13 359.2 359.9
C3 C11 C12 H12 179.2 179.9
C1 C2 C3 C11 360.0 359.4
C3 C2 C1 H2 180.0 180.5
C13 C1 C2 H1 180.0 180.2
C2 C1 C13 C12 0.9 359.8
C2 C1 C13 N14 180.6 179.7
H2 C2 C3 C11 180.0 179.9
C3 C2 H2 C1 180.0 179.5
H2 C2 C1 C13 179.2 180.0
H2 C2 C1 H1 359.2 359.8
C13 C1 C2 H2 179.2 180.0
C2 C1 C13 H1 180.0 179.8
C11 C12 C13 C1 359.9 360.0
C1 C13 C12 H12 179.9 180.0
C12 C13 C1 N14 180.3 180.0
C1 C13 N14 H141 54.7 0.1
C1 C13 N14 H142 180.0 180.1
H1 C1 C2 H2 359.2 359.8
C2 C1 H1 C13 180.0 180.2
H1 C1 C13 C12 180.9 180.0
H1 C1 C13 N14 0.6 359.9
C3 C11 C12 H11 180.0 179.9
C1 C13 C12 C11 359.9 360.0
C13 C12 C11 H12 180.0 180.1
C11 C12 C13 N14 180.2 180.0
C3 C11 H11 C12 180.0 180.1
H11 C11 C12 C13 179.2 180.0
H11 C11 C12 H12 359.2 360.0
C12 C13 C1 H1 180.9 180.0
C1 C13 C12 N14 179.7 180.0
C13 C12 C11 H11 179.2 180.0
C11 C12 C13 H12 180.0 179.9
C12 C13 N14 H141 234.4 180.0
C12 C13 N14 H142 359.7 0.0
H12 C12 C11 H11 359.2 360.0
C11 C12 H12 C13 180.0 180.1
H12 C12 C13 N14 0.2 0.1
N14 C13 C1 H1 0.6 359.9
C1 C13 N14 C12 180.3 180.0
N14 C13 C12 H12 0.2 0.1
H141 N14 C13 H142 234.7 180.0
C13 N14 H141 H142 133.0 180.0
C13 N14 H142 H141 234.7 180.0