PDB Chemical Component 5D0

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5D0

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C30	C29	1.524	1.534
C30	C31	1.524	1.530
C29	N24	1.450	1.471
C26	N22	1.453	1.458
C26	C27	1.523	1.530
C31	N25	1.457	1.459
N22	C21	1.258	1.292
N24	C20	1.331	1.378
N25	C20	1.258	1.292
C27	C28	1.527	1.535
C20	C11	1.501	1.479
C18	C19	1.388	1.378
C18	C17	1.388	1.396
C10	C11	1.388	1.395
C10	C9	1.387	1.377
C19	C14	1.386	1.389
C11	C12	1.394	1.396
C21	C17	1.500	1.479
C21	N23	1.329	1.378
C9	C8	1.387	1.390
C17	C16	1.387	1.395
C28	N23	1.451	1.471
C12	C13	1.391	1.378
C8	C13	1.397	1.389
C8	O6	1.375	1.357
C14	O7	1.372	1.358
C14	C15	1.386	1.389
C3	C2	1.528	1.531
C3	C4	1.526	1.530
C1	O7	1.429	1.429
C1	C2	1.528	1.530
O6	C5	1.426	1.429
C5	C4	1.526	1.529
C16	C15	1.387	1.379
C1	H1	1.100	1.090
C1	H2	1.099	1.090
C2	H3	1.100	1.090
C2	H4	1.100	1.090
C3	H5	1.100	1.090
C3	H6	1.100	1.090
C9	H7	1.080	1.080
C10	H8	1.080	1.081
C12	H9	1.080	1.080
C13	H10	1.080	1.080
C15	H11	1.080	1.080
C16	H12	1.080	1.081
C19	H13	1.080	1.080
N23	H15	1.000	0.970
C27	H17	1.100	1.090
C27	H18	1.100	1.090
C30	H19	1.100	1.090
C30	H20	1.100	1.090
C31	H21	1.100	1.090
C31	H22	1.100	1.091
C4	H23	1.100	1.091
C4	H24	1.100	1.090
C5	H25	1.101	1.090
C5	H26	1.100	1.090
C18	H27	1.080	1.080
N24	H30	1.000	0.970
C26	H31	1.100	1.090
C26	H32	1.100	1.090
C28	H33	1.100	1.090
C28	H34	1.100	1.089
C29	H35	1.100	1.090
C29	H36	1.100	1.090

Bond Angles for 5D0

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C31	C30	C29	109.4	108.6
C30	C29	N24	111.6	107.4
C29	C30	H19	109.5	109.6
C29	C30	H20	109.5	109.6
C30	C29	H35	109.0	109.9
C30	C29	H36	108.9	109.9
C31	C30	H19	109.5	109.6
C31	C30	H20	109.5	109.5
C30	C31	H21	110.9	109.3
C30	C31	H22	110.9	109.3
C29	N24	H30	118.9	120.6
C26	C27	C28	112.3	108.6
C26	C27	H17	108.7	109.7
C26	C27	H18	108.8	109.6
C28	C27	H17	108.7	109.6
C28	C27	H18	108.8	109.6
C27	C28	H33	108.4	109.9
C27	C28	H34	108.4	109.9
C18	C19	H13	120.2	120.0
C10	C11	C12	119.7	119.8
C11	C10	H8	119.6	120.0
C10	C9	H7	120.1	120.0
C19	C14	O7	120.7	119.9
C11	C12	C13	119.7	119.9
C11	C12	H9	120.2	120.0
N23	C21	C17	120.5	118.8
C21	N23	H15	119.3	120.7
C9	C8	C13	119.9	120.2
C9	C8	O6	118.5	119.9
C17	C16	H12	120.2	120.1
C28	N23	H15	119.4	120.7
C8	C13	C12	120.2	120.0
C13	C12	H9	120.1	120.1
C12	C13	H10	119.9	119.9
C13	C8	O6	121.6	119.9
C8	C13	H10	119.9	120.0
C8	O6	C5	122.1	117.0
C15	C14	O7	119.6	119.9
C1	O7	C14	121.2	117.0
C14	C15	H11	119.6	120.0
C3	C2	H3	108.8	109.5
C3	C2	H4	108.8	109.4
C4	C3	H5	108.9	109.5
C4	C3	H6	108.9	109.5
C3	C4	H23	109.0	109.5
C3	C4	H24	109.1	109.4
C2	C1	O7	108.9	109.5
O7	C1	H1	109.6	109.5
O7	C1	H2	109.6	109.4
C2	C1	H1	109.6	109.5
C2	C1	H2	109.6	109.5
C1	C2	H3	108.8	109.5
C1	C2	H4	108.8	109.5
O6	C5	H25	109.5	109.5
O6	C5	H26	109.5	109.5
C5	C4	H23	109.0	109.5
C5	C4	H24	109.0	109.5
C16	C15	H11	119.7	120.0
H1	C1	H2	109.5	109.5
H3	C2	H4	109.5	109.5
H5	C3	H6	109.5	109.5
H17	C27	H18	109.5	109.7
H19	C30	H20	109.5	109.8
H21	C31	H22	109.5	109.2
H23	C4	H24	109.4	109.4
H25	C5	H26	109.5	109.4
H31	C26	H32	109.5	109.2
H33	C28	H34	109.5	110.0
H35	C29	H36	109.5	109.9

Torsion Angles for 5D0

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C31	C30	C29	H19	240.0	119.8
C31	C30	C29	H20	120.0	240.4
C29	C30	C31	H21	62.9	289.1
C29	C30	C31	H22	184.7	169.6
C30	C29	N24	H30	165.8	222.3
H19	C30	C29	H20	240.0	120.7
H35	C29	C30	H36	240.6	239.0
C31	C30	C29	N24	46.8	300.7
C29	C30	C31	H19	120.0	240.2
C29	C30	C31	H20	240.0	119.7
C31	C30	C29	H35	167.2	60.0
C31	C30	C29	H36	286.5	181.0
H19	C30	C31	H20	120.0	239.4
H21	C31	C30	H22	238.1	119.5
N24	C29	C30	H19	166.9	180.9
N24	C29	C30	H20	286.9	60.2
C30	C29	N24	H35	120.3	119.4
C30	C29	N24	H36	239.7	240.4
N22	C26	C27	C28	314.2	49.4
N22	C26	C27	H17	74.6	169.1
N22	C26	C27	H18	193.7	289.6
C28	C27	C26	H17	239.6	240.2
C28	C27	C26	H18	120.5	119.7
C26	C27	C28	H33	160.2	181.1
C26	C27	C28	H34	279.1	60.0
H17	C27	C26	H18	240.9	239.5
N22	C21	N23	H15	195.3	166.8
C26	C27	C28	H17	120.4	119.8
C26	C27	C28	H18	239.6	240.2
C27	C28	N23	H15	157.2	222.3
H17	C27	C28	H18	119.1	120.4
H33	C28	C27	H34	241.2	121.1
C20	C11	C10	H8	359.8	0.1
C20	C11	C12	H9	0.5	0.0
C17	C18	C19	H13	180.8	180.0
C18	C17	C16	H12	180.4	179.7
C11	C10	C9	H7	179.6	180.1
C10	C11	C12	C13	359.5	0.1
C10	C11	C12	H9	179.5	180.1
C10	C9	C8	C13	359.8	0.0
C10	C9	C8	O6	180.5	179.7
C15	C14	C19	O7	180.0	179.7
C1	O7	C14	C19	293.7	359.8
C19	C14	C15	H11	179.7	180.2
C12	C11	C10	H8	180.8	180.0
C8	C13	C12	C11	359.9	360.0
C13	C12	C11	H9	180.0	180.0
C11	C12	C13	H10	179.9	180.2
C17	C21	N23	H15	16.7	347.1
C21	C17	C16	H12	359.4	0.1
C28	N23	C21	H15	180.0	180.0
C9	C8	C13	C12	0.5	360.0
C13	C8	C9	O6	179.2	180.3
C9	C8	C13	H10	180.5	179.7
C9	C8	O6	C5	225.4	0.3
C17	C16	C15	H11	180.2	180.1
C21	N23	C28	H15	180.0	180.0
C11	C12	C13	H9	180.0	180.0
C12	C13	C8	O6	179.7	180.3
C8	C13	C12	H10	180.0	179.7
C11	C12	C13	C8	359.9	360.0
C9	C8	C13	O6	180.8	179.7
C8	C13	C12	H9	179.9	180.0
C12	C13	C8	H10	180.0	180.3
C13	C8	O6	C5	46.2	180.0
C9	C8	O6	C13	179.2	180.3
O6	C8	C13	C12	179.7	180.3
O6	C8	C13	H10	359.7	0.0
C8	O6	C5	H25	298.2	59.9
C8	O6	C5	H26	58.2	300.0
O7	C14	C15	H11	359.6	359.9
C2	C1	O7	C14	175.5	180.0
C14	O7	C1	H1	295.4	60.0
C14	O7	C1	H2	55.6	300.0
C19	C14	C15	O7	180.0	180.3
C1	O7	C14	C15	113.7	180.1
C16	C15	C14	H11	180.0	180.1
C3	C2	C1	O7	190.3	180.0
C3	C2	C1	H1	70.3	300.0
C3	C2	C1	H2	310.2	60.0
C1	C2	C3	H3	239.6	120.0
C1	C2	C3	H4	120.4	240.0
H3	C2	C3	H4	240.8	120.0
C4	C3	C2	H3	26.0	60.0
C4	C3	C2	H4	145.2	300.0
C5	C4	C3	H23	239.7	240.0
C5	C4	C3	H24	120.3	120.0
H5	C3	C4	H6	119.3	120.0
H23	C4	C3	H24	240.5	240.1
C19	C14	O7	C1	293.7	359.8
C15	C14	O7	C1	113.7	180.1
C2	C1	O7	H1	240.1	120.0
C2	C1	O7	H2	119.9	240.0
O7	C1	C2	H3	69.9	299.9
O7	C1	C2	H4	310.6	60.0
H1	C1	O7	H2	239.8	120.0
C3	C2	C1	H3	120.4	240.0
C3	C2	C1	H4	239.6	120.0
O7	C1	C2	H1	119.9	240.0
O7	C1	C2	H2	240.1	119.9
H1	C1	C2	H2	120.1	240.0
H3	C2	C1	H4	119.3	240.0
O6	C5	C4	H23	139.5	59.9
O6	C5	C4	H24	20.1	300.0
H25	C5	O6	H26	239.9	119.9
C8	O6	C5	C4	178.2	180.0
C5	C4	C3	H5	38.4	60.0
C5	C4	C3	H6	279.1	300.0
C3	C4	C5	H23	120.3	120.0
C3	C4	C5	H24	239.7	240.0
H23	C4	C5	H24	119.4	120.0
C16	C15	C14	O7	179.6	180.0
C14	C15	C16	H11	180.0	179.9
H1	C1	O7	C14	295.4	60.0
C2	C1	H1	O7	119.5	240.0
O7	C1	H1	H2	120.3	240.0
C2	C1	H1	H2	239.8	120.0
H1	C1	C2	H3	310.0	60.0
H1	C1	C2	H4	190.7	180.0
H2	C1	O7	C14	55.6	300.0
C2	C1	H2	O7	240.5	120.0
O7	C1	H2	H1	239.7	120.0
C2	C1	H2	H1	120.2	240.0
H2	C1	C2	H3	189.8	180.0
H2	C1	C2	H4	70.6	300.0
C3	C2	H3	H4	118.8	240.0
H3	C2	C1	O7	69.9	299.9
H3	C2	C1	H1	310.0	60.0
H3	C2	C1	H2	189.8	180.0
C1	C2	H3	H4	241.1	120.0
C3	C2	H4	H3	241.2	120.0
H4	C2	C1	O7	310.6	60.0
H4	C2	C1	H1	190.7	180.0
H4	C2	C1	H2	70.6	300.0
C1	C2	H4	H3	118.9	240.0
H5	C3	C2	H3	146.3	180.0
H5	C3	C2	H4	265.5	60.0
C4	C3	H5	H6	241.1	240.0
H5	C3	C4	H23	158.7	180.0
H5	C3	C4	H24	278.1	300.0
H6	C3	C2	H3	265.6	300.0
H6	C3	C2	H4	24.9	180.0
C4	C3	H6	H5	118.9	120.0
H6	C3	C4	H23	39.3	60.0
H6	C3	C4	H24	158.8	179.9
H7	C9	C8	C13	179.8	180.0
H7	C9	C8	O6	0.6	359.7
H8	C10	C11	C12	180.8	180.0
H8	C10	C9	H7	359.6	360.0
C11	C12	H9	C13	180.0	180.0
H9	C12	C13	H10	359.9	0.2
C8	C13	H10	C12	180.0	180.3
H10	C13	C12	H9	359.9	0.2
H10	C13	C8	O6	359.7	0.0
H11	C15	C14	O7	359.6	359.9
H12	C16	C15	H11	0.2	0.0
H13	C19	C14	O7	359.9	360.0
H15	N23	C21	C17	16.7	347.1
C26	C27	H17	C28	237.4	240.9
C26	C27	H17	H18	118.7	120.5
C28	C27	H17	H18	241.3	239.6
H17	C27	C28	H33	39.8	61.3
H17	C27	C28	H34	158.6	300.2
C26	C27	H18	C28	122.6	119.1
C26	C27	H18	H17	241.3	239.5
C28	C27	H18	H17	118.7	120.4
H18	C27	C28	H33	280.7	300.9
H18	C27	C28	H34	39.5	179.7
C31	C30	H19	C29	120.0	240.9
H19	C30	C29	N24	166.9	180.9
C29	C30	H19	H20	120.0	239.5
H19	C30	C29	H35	287.2	300.2
H19	C30	C29	H36	46.5	61.2
C31	C30	H19	H20	240.0	120.3
H19	C30	C31	H21	302.8	48.8
H19	C30	C31	H22	64.7	289.4
C31	C30	H20	C29	240.0	119.0
H20	C30	C29	N24	286.9	60.2
C29	C30	H20	H19	240.0	120.5
H20	C30	C29	H35	47.2	179.6
H20	C30	C29	H36	166.6	300.6
C31	C30	H20	H19	120.0	239.6
H20	C30	C31	H21	182.9	169.4
H20	C30	C31	H22	304.7	49.9
H21	C31	C30	C29	62.9	289.1
H21	C31	C30	H19	302.8	48.8
H21	C31	C30	H20	182.9	169.4
C30	C31	H21	H22	122.7	240.5
H22	C31	C30	C29	184.7	169.6
H22	C31	C30	H19	64.7	289.4
H22	C31	C30	H20	304.7	49.9
C30	C31	H22	H21	237.3	119.5
H23	C4	C3	H5	158.7	180.0
H23	C4	C3	H6	39.3	60.0
C3	C4	H23	H24	119.2	119.9
C5	C4	H23	H24	240.8	240.0
H24	C4	C3	H5	278.1	300.0
H24	C4	C3	H6	158.8	179.9
C3	C4	H24	H23	240.8	240.0
C5	C4	H24	H23	119.2	120.0
O6	C5	H25	H26	120.1	240.0
H25	C5	C4	H23	19.5	180.0
H25	C5	C4	H24	260.1	60.1
O6	C5	H26	H25	239.9	120.0
H26	C5	C4	H23	259.5	299.9
H26	C5	C4	H24	140.0	180.0
H27	C18	C19	H13	0.7	0.0
H31	C26	C27	C28	194.8	169.7
H31	C26	C27	H17	315.2	289.4
H31	C26	C27	H18	74.3	49.9
H32	C26	C27	C28	73.5	289.0
H32	C26	C27	H17	193.9	48.8
H32	C26	C27	H18	313.1	169.3
H33	C28	C27	H17	39.8	61.3
H33	C28	C27	H18	280.7	300.9
C27	C28	H33	H34	118.2	238.9
H33	C28	N23	H15	36.6	341.8
H34	C28	C27	H17	158.6	300.2
H34	C28	C27	H18	39.5	179.7
C27	C28	H34	H33	241.9	121.1
H34	C28	N23	H15	277.8	102.9
C30	C29	H35	N24	238.0	242.1
H35	C29	C30	H19	287.2	300.2
H35	C29	C30	H20	47.2	179.6
C30	C29	H35	H36	119.1	121.0
H35	C29	N24	H30	45.4	102.9
C30	C29	H36	N24	122.0	118.1
H36	C29	C30	H19	46.5	61.2
H36	C29	C30	H20	166.6	300.6
C30	C29	H36	H35	240.9	239.0
H36	C29	N24	H30	286.1	341.9