PDB Chemical Component 5CZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5CZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N35 |
C34 |
1.422 |
1.304 |
| C34 |
N38 |
1.264 |
1.378 |
| C34 |
C32 |
1.502 |
1.479 |
| C32 |
C31 |
1.399 |
1.401 |
| C32 |
C33 |
1.391 |
1.392 |
| C31 |
C30 |
1.396 |
1.362 |
| C33 |
C11 |
1.392 |
1.387 |
| C30 |
C10 |
1.394 |
1.402 |
| C11 |
C10 |
1.377 |
1.409 |
| C11 |
N12 |
1.350 |
1.380 |
| C10 |
C9 |
1.430 |
1.416 |
| N12 |
C8 |
1.362 |
1.375 |
| C9 |
C8 |
1.397 |
1.358 |
| C8 |
C2 |
1.491 |
1.478 |
| C2 |
C7 |
1.377 |
1.396 |
| C2 |
C3 |
1.385 |
1.396 |
| C7 |
C6 |
1.386 |
1.378 |
| C3 |
C4 |
1.394 |
1.378 |
| C6 |
C5 |
1.382 |
1.389 |
| C4 |
C5 |
1.390 |
1.388 |
| C5 |
O19 |
1.366 |
1.359 |
| O19 |
C20 |
1.379 |
1.357 |
| C20 |
C21 |
1.385 |
1.389 |
| C20 |
C25 |
1.397 |
1.390 |
| C21 |
C22 |
1.396 |
1.377 |
| C25 |
C24 |
1.403 |
1.378 |
| C22 |
C23 |
1.386 |
1.395 |
| C24 |
C23 |
1.393 |
1.396 |
| C23 |
C26 |
1.507 |
1.479 |
| C26 |
N29 |
1.414 |
1.304 |
| C26 |
N27 |
1.256 |
1.378 |
| C3 |
H1 |
1.080 |
1.080 |
| C7 |
H2 |
1.080 |
1.081 |
| C9 |
H3 |
1.080 |
1.080 |
| C21 |
H4 |
1.080 |
1.080 |
| C22 |
H5 |
1.080 |
1.081 |
| C24 |
H6 |
1.080 |
1.080 |
| N29 |
H7 |
1.000 |
0.971 |
| C30 |
H8 |
1.080 |
1.080 |
| C31 |
H9 |
1.080 |
1.079 |
| C33 |
H10 |
1.080 |
1.079 |
| C4 |
H11 |
1.080 |
1.080 |
| C6 |
H12 |
1.080 |
1.080 |
| N12 |
H13 |
1.000 |
0.971 |
| C25 |
H14 |
1.080 |
1.081 |
| N27 |
H15 |
1.000 |
0.970 |
| N27 |
H16 |
1.000 |
0.970 |
| N35 |
H17 |
1.000 |
0.970 |
| N38 |
H18 |
1.000 |
0.970 |
| N38 |
H19 |
1.000 |
0.970 |
Bond Angles for 5CZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N35 |
C34 |
N38 |
120.4 |
120.0 |
| C34 |
N38 |
H18 |
120.0 |
120.0 |
| C34 |
N38 |
H19 |
120.0 |
120.0 |
| C32 |
C31 |
H9 |
120.0 |
119.8 |
| C32 |
C33 |
H10 |
120.5 |
120.2 |
| C31 |
C30 |
H8 |
120.3 |
120.0 |
| C33 |
C11 |
N12 |
133.5 |
133.1 |
| C11 |
N12 |
H13 |
124.4 |
125.6 |
| C10 |
C9 |
H3 |
128.7 |
126.2 |
| C3 |
C2 |
C7 |
118.9 |
119.8 |
| C2 |
C7 |
C6 |
121.5 |
119.9 |
| C2 |
C7 |
H2 |
119.3 |
120.1 |
| C2 |
C3 |
C4 |
120.2 |
119.9 |
| C2 |
C3 |
H1 |
119.9 |
120.0 |
| C7 |
C6 |
C5 |
119.8 |
120.1 |
| C6 |
C7 |
H2 |
119.2 |
120.0 |
| C7 |
C6 |
H12 |
120.1 |
120.0 |
| C3 |
C4 |
C5 |
120.3 |
120.1 |
| C4 |
C3 |
H1 |
119.9 |
120.1 |
| C3 |
C4 |
H11 |
119.8 |
119.9 |
| C6 |
C5 |
O19 |
119.2 |
119.9 |
| C4 |
C5 |
O19 |
121.5 |
119.9 |
| C5 |
C4 |
H11 |
119.9 |
120.0 |
| O19 |
C20 |
C25 |
122.5 |
119.9 |
| C21 |
C20 |
C25 |
119.8 |
120.1 |
| C20 |
C21 |
C22 |
120.0 |
120.1 |
| C20 |
C21 |
H4 |
120.0 |
120.0 |
| C20 |
C25 |
C24 |
120.2 |
120.1 |
| C20 |
C25 |
H14 |
119.9 |
120.0 |
| C21 |
C22 |
C23 |
120.5 |
120.0 |
| C22 |
C21 |
H4 |
120.0 |
119.9 |
| C21 |
C22 |
H5 |
119.7 |
120.0 |
| C25 |
C24 |
H6 |
120.2 |
120.0 |
| C22 |
C23 |
C24 |
120.0 |
119.8 |
| C22 |
C23 |
C26 |
117.9 |
120.1 |
| C23 |
C22 |
H5 |
119.7 |
120.0 |
| C24 |
C23 |
C26 |
122.0 |
120.1 |
| C23 |
C24 |
H6 |
120.3 |
120.0 |
| C23 |
C26 |
N27 |
122.1 |
120.0 |
| C26 |
N29 |
H7 |
112.0 |
120.0 |
| C26 |
N27 |
H15 |
120.0 |
120.0 |
| C26 |
N27 |
H16 |
120.0 |
120.0 |
| H15 |
N27 |
H16 |
120.0 |
120.0 |
| H18 |
N38 |
H19 |
120.0 |
120.0 |
Torsion Angles for 5CZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N35 |
C34 |
N38 |
H18 |
179.8 |
180.0 |
| N35 |
C34 |
N38 |
H19 |
359.8 |
0.1 |
| H18 |
N38 |
C34 |
H19 |
180.0 |
179.9 |
| C34 |
C32 |
C31 |
H9 |
360.0 |
359.9 |
| C34 |
C32 |
C33 |
H10 |
359.9 |
0.1 |
| C32 |
C31 |
C30 |
H8 |
180.0 |
180.0 |
| C33 |
C32 |
C31 |
H9 |
180.3 |
180.0 |
| C32 |
C33 |
C11 |
N12 |
180.3 |
180.3 |
| C33 |
C11 |
N12 |
H13 |
0.2 |
359.7 |
| C30 |
C10 |
C9 |
H3 |
0.0 |
359.9 |
| C11 |
C10 |
C9 |
H3 |
180.0 |
180.0 |
| C8 |
C2 |
C7 |
C6 |
179.9 |
180.3 |
| C8 |
C2 |
C7 |
H2 |
359.9 |
0.3 |
| C8 |
C2 |
C3 |
C4 |
179.9 |
179.7 |
| C8 |
C2 |
C3 |
H1 |
360.0 |
359.6 |
| C7 |
C2 |
C3 |
C4 |
359.2 |
0.1 |
| C7 |
C2 |
C3 |
H1 |
179.2 |
180.0 |
| C2 |
C7 |
C6 |
C5 |
359.8 |
0.1 |
| C6 |
C7 |
C2 |
H2 |
180.0 |
180.0 |
| C2 |
C7 |
C6 |
H12 |
179.8 |
180.0 |
| C3 |
C2 |
C7 |
C6 |
0.7 |
359.9 |
| C3 |
C2 |
C7 |
H2 |
180.6 |
179.9 |
| C2 |
C3 |
C4 |
C5 |
0.5 |
360.0 |
| C4 |
C3 |
C2 |
H1 |
180.0 |
180.1 |
| C2 |
C3 |
C4 |
H11 |
180.5 |
179.9 |
| C2 |
C7 |
C6 |
H2 |
180.0 |
180.0 |
| C7 |
C6 |
C5 |
O19 |
180.1 |
180.0 |
| C4 |
C3 |
C2 |
C7 |
359.2 |
0.1 |
| C2 |
C3 |
C4 |
H1 |
180.0 |
179.9 |
| C3 |
C4 |
C5 |
O19 |
179.8 |
180.0 |
| C5 |
C4 |
C3 |
H11 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
H2 |
179.8 |
180.0 |
| C7 |
C6 |
C5 |
H12 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
O19 |
179.8 |
179.9 |
| C6 |
C5 |
C4 |
H11 |
179.9 |
180.1 |
| C7 |
C6 |
C5 |
C4 |
359.9 |
360.0 |
| C5 |
C4 |
C3 |
H1 |
180.5 |
180.1 |
| C3 |
C4 |
C5 |
H11 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
O19 |
180.2 |
180.1 |
| O19 |
C5 |
C4 |
H11 |
359.7 |
360.0 |
| C5 |
O19 |
C20 |
C25 |
15.0 |
67.7 |
| C21 |
C20 |
O19 |
C25 |
180.2 |
179.7 |
| O19 |
C20 |
C21 |
H4 |
359.8 |
0.3 |
| O19 |
C20 |
C25 |
C24 |
180.2 |
179.8 |
| O19 |
C20 |
C25 |
H14 |
0.2 |
359.6 |
| O19 |
C20 |
C21 |
C25 |
179.9 |
180.3 |
| C21 |
C20 |
C25 |
C24 |
0.0 |
0.1 |
| C21 |
C20 |
C25 |
H14 |
180.0 |
179.9 |
| C20 |
C21 |
C22 |
C23 |
0.7 |
359.9 |
| C22 |
C21 |
C20 |
H4 |
180.0 |
180.1 |
| C20 |
C21 |
C22 |
H5 |
180.7 |
179.9 |
| C25 |
C20 |
C21 |
C22 |
360.0 |
0.0 |
| C25 |
C20 |
C21 |
H4 |
180.0 |
180.0 |
| C20 |
C25 |
C24 |
H6 |
179.3 |
180.0 |
| C22 |
C21 |
C20 |
C25 |
360.0 |
0.0 |
| C20 |
C21 |
C22 |
H4 |
180.0 |
179.9 |
| C21 |
C22 |
C23 |
C24 |
358.7 |
0.0 |
| C21 |
C22 |
C23 |
C26 |
181.5 |
180.0 |
| C23 |
C22 |
C21 |
H5 |
180.0 |
180.0 |
| C20 |
C25 |
C24 |
H14 |
180.0 |
179.9 |
| C25 |
C24 |
C23 |
C26 |
178.4 |
180.1 |
| C23 |
C24 |
C25 |
H6 |
180.0 |
179.9 |
| C23 |
C22 |
C21 |
H4 |
180.7 |
180.0 |
| C21 |
C22 |
C23 |
H5 |
180.0 |
180.0 |
| C24 |
C23 |
C22 |
C26 |
177.2 |
180.0 |
| C22 |
C23 |
C24 |
H6 |
181.3 |
179.9 |
| C22 |
C23 |
C26 |
N27 |
210.0 |
180.0 |
| C20 |
C25 |
C24 |
C23 |
359.3 |
359.9 |
| C25 |
C24 |
C23 |
H6 |
180.0 |
180.1 |
| C22 |
C23 |
C24 |
C26 |
182.9 |
180.0 |
| C24 |
C23 |
C22 |
H5 |
178.6 |
180.0 |
| C24 |
C23 |
C26 |
N27 |
32.8 |
360.0 |
| C22 |
C23 |
C26 |
C24 |
177.2 |
180.0 |
| C26 |
C23 |
C22 |
H5 |
1.4 |
360.0 |
| C26 |
C23 |
C24 |
H6 |
358.4 |
360.0 |
| C23 |
C26 |
N29 |
H7 |
177.4 |
180.0 |
| C23 |
C26 |
N27 |
H15 |
182.7 |
0.0 |
| C23 |
C26 |
N27 |
H16 |
2.7 |
180.1 |
| C22 |
C23 |
C26 |
N29 |
32.6 |
0.1 |
| C24 |
C23 |
C26 |
N29 |
215.5 |
180.0 |
| N27 |
C26 |
N29 |
H7 |
0.0 |
0.0 |
| H15 |
N27 |
C26 |
H16 |
180.0 |
180.0 |
| H1 |
C3 |
C2 |
C7 |
179.2 |
180.0 |
| C2 |
C3 |
H1 |
C4 |
180.0 |
180.1 |
| H1 |
C3 |
C4 |
C5 |
180.5 |
180.1 |
| H1 |
C3 |
C4 |
H11 |
0.5 |
0.0 |
| C2 |
C7 |
H2 |
C6 |
180.0 |
180.0 |
| H2 |
C7 |
C6 |
C5 |
179.8 |
180.0 |
| H2 |
C7 |
C6 |
H12 |
359.8 |
360.0 |
| H4 |
C21 |
C20 |
C25 |
180.0 |
180.0 |
| C20 |
C21 |
H4 |
C22 |
180.0 |
180.1 |
| H4 |
C21 |
C22 |
C23 |
180.7 |
180.0 |
| H4 |
C21 |
C22 |
H5 |
0.7 |
0.0 |
| C21 |
C22 |
H5 |
C23 |
180.0 |
180.0 |
| H5 |
C22 |
C21 |
H4 |
0.7 |
0.0 |
| H5 |
C22 |
C23 |
C24 |
178.6 |
180.0 |
| H5 |
C22 |
C23 |
C26 |
1.4 |
360.0 |
| H6 |
C24 |
C23 |
C26 |
358.4 |
360.0 |
| H9 |
C31 |
C30 |
H8 |
360.0 |
0.0 |
| H10 |
C33 |
C11 |
N12 |
0.3 |
0.3 |
| C3 |
C4 |
H11 |
C5 |
180.0 |
180.0 |
| H11 |
C4 |
C3 |
H1 |
0.5 |
0.0 |
| H11 |
C4 |
C5 |
O19 |
359.7 |
360.0 |
| C7 |
C6 |
H12 |
C5 |
180.0 |
180.0 |
| H12 |
C6 |
C7 |
H2 |
359.8 |
360.0 |
| H12 |
C6 |
C5 |
O19 |
0.1 |
0.1 |
| C20 |
C25 |
H14 |
C24 |
180.0 |
180.1 |
| H14 |
C25 |
C24 |
H6 |
359.3 |
0.2 |
| C26 |
N27 |
H15 |
H16 |
180.0 |
180.0 |
| C26 |
N27 |
H16 |
H15 |
180.0 |
180.0 |
| H17 |
N35 |
C34 |
N38 |
180.2 |
180.0 |
| C34 |
N38 |
H18 |
H19 |
180.0 |
180.1 |
| C34 |
N38 |
H19 |
H18 |
180.0 |
179.9 |