PDB Chemical Component 5CX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5CX
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C13 |
C12 |
1.388 |
1.384 |
| C13 |
C14 |
1.396 |
1.384 |
| C12 |
C11 |
1.374 |
1.380 |
| C14 |
C15 |
1.388 |
1.380 |
| C11 |
C10 |
1.401 |
1.394 |
| C17 |
C16 |
1.514 |
1.530 |
| C15 |
C10 |
1.362 |
1.393 |
| C15 |
C16 |
1.479 |
1.507 |
| C10 |
C7 |
1.484 |
1.484 |
| C16 |
C18 |
1.526 |
1.530 |
| C6 |
C7 |
1.396 |
1.393 |
| C6 |
C5 |
1.391 |
1.380 |
| C7 |
C8 |
1.369 |
1.394 |
| C5 |
C4 |
1.369 |
1.384 |
| C8 |
C9 |
1.373 |
1.380 |
| C4 |
C9 |
1.376 |
1.383 |
| C4 |
S1 |
1.757 |
1.762 |
| N1 |
S1 |
1.653 |
1.655 |
| O2 |
S1 |
1.413 |
1.421 |
| S1 |
O3 |
1.342 |
1.420 |
| N1 |
H1 |
1.000 |
0.970 |
| N1 |
H2 |
1.000 |
0.970 |
| C5 |
H3 |
1.080 |
1.080 |
| C6 |
H4 |
1.080 |
1.080 |
| C8 |
H5 |
1.080 |
1.079 |
| C9 |
H6 |
1.080 |
1.080 |
| C11 |
H7 |
1.080 |
1.080 |
| C12 |
H8 |
1.080 |
1.080 |
| C13 |
H9 |
1.080 |
1.079 |
| C14 |
H10 |
1.080 |
1.080 |
| C16 |
H11 |
1.100 |
1.090 |
| C17 |
H12 |
1.100 |
1.090 |
| C17 |
H13 |
1.100 |
1.090 |
| C17 |
H14 |
1.100 |
1.090 |
| C18 |
H15 |
1.100 |
1.090 |
| C18 |
H16 |
1.100 |
1.089 |
| C18 |
H17 |
1.100 |
1.090 |
Bond Angles for 5CX
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C13 |
C12 |
H8 |
121.5 |
119.9 |
| C13 |
C14 |
C15 |
121.1 |
120.1 |
| C14 |
C13 |
H9 |
119.7 |
119.9 |
| C13 |
C14 |
H10 |
119.5 |
119.9 |
| C12 |
C11 |
H7 |
118.5 |
120.1 |
| C14 |
C15 |
C16 |
120.9 |
120.1 |
| C15 |
C14 |
H10 |
119.4 |
119.9 |
| C17 |
C16 |
C18 |
107.6 |
109.4 |
| C17 |
C16 |
H11 |
111.3 |
109.5 |
| C15 |
C16 |
C18 |
109.5 |
109.5 |
| C15 |
C16 |
H11 |
111.8 |
109.5 |
| C18 |
C16 |
H11 |
111.1 |
109.5 |
| C16 |
C18 |
H15 |
109.5 |
109.4 |
| C16 |
C18 |
H16 |
109.5 |
109.5 |
| C16 |
C18 |
H17 |
109.5 |
109.5 |
| C6 |
C7 |
C8 |
119.1 |
119.8 |
| C7 |
C6 |
H4 |
120.2 |
120.1 |
| C6 |
C5 |
H3 |
120.1 |
120.0 |
| C7 |
C8 |
C9 |
121.1 |
119.8 |
| C7 |
C8 |
H5 |
119.4 |
120.1 |
| C5 |
C4 |
C9 |
120.5 |
120.2 |
| C4 |
C9 |
C8 |
119.7 |
120.1 |
| C9 |
C8 |
H5 |
119.4 |
120.0 |
| C8 |
C9 |
H6 |
120.2 |
119.9 |
| C4 |
C9 |
H6 |
120.2 |
119.9 |
| N1 |
S1 |
O3 |
105.0 |
106.4 |
| O2 |
S1 |
O3 |
116.9 |
123.1 |
| H1 |
N1 |
H2 |
109.5 |
119.9 |
| H12 |
C17 |
H13 |
109.4 |
109.4 |
| H12 |
C17 |
H14 |
109.4 |
109.5 |
| H13 |
C17 |
H14 |
109.5 |
109.5 |
| H15 |
C18 |
H16 |
109.5 |
109.5 |
| H15 |
C18 |
H17 |
109.5 |
109.4 |
| H16 |
C18 |
H17 |
109.5 |
109.5 |
Torsion Angles for 5CX
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C13 |
C12 |
C11 |
H7 |
182.5 |
180.0 |
| C14 |
C13 |
C12 |
H8 |
178.0 |
180.1 |
| C13 |
C14 |
C15 |
C16 |
180.4 |
180.0 |
| C15 |
C14 |
C13 |
H10 |
180.0 |
179.6 |
| C15 |
C14 |
C13 |
H9 |
181.1 |
179.7 |
| C13 |
C14 |
C15 |
H10 |
180.0 |
180.4 |
| C14 |
C15 |
C16 |
C18 |
48.1 |
60.0 |
| C14 |
C15 |
C16 |
H11 |
171.6 |
180.0 |
| C15 |
C16 |
C17 |
C18 |
116.8 |
120.0 |
| C15 |
C16 |
C17 |
H11 |
238.7 |
240.0 |
| C18 |
C16 |
C17 |
H11 |
121.9 |
120.0 |
| C17 |
C16 |
C18 |
H15 |
180.0 |
179.9 |
| C17 |
C16 |
C18 |
H16 |
300.0 |
300.0 |
| C17 |
C16 |
C18 |
H17 |
60.0 |
60.0 |
| C16 |
C15 |
C14 |
H10 |
0.4 |
359.7 |
| C17 |
C16 |
C15 |
C18 |
244.5 |
240.1 |
| C17 |
C16 |
C15 |
H11 |
121.0 |
120.0 |
| C18 |
C16 |
C15 |
H11 |
236.4 |
239.9 |
| C15 |
C16 |
C18 |
H15 |
66.0 |
60.0 |
| C15 |
C16 |
C18 |
H16 |
186.0 |
180.0 |
| C15 |
C16 |
C18 |
H17 |
306.0 |
300.1 |
| C10 |
C7 |
C6 |
H4 |
3.7 |
0.0 |
| C10 |
C7 |
C8 |
H5 |
356.9 |
0.0 |
| C17 |
C16 |
C18 |
H11 |
238.0 |
240.0 |
| C15 |
C16 |
C18 |
H11 |
124.0 |
120.0 |
| H15 |
C18 |
C16 |
H16 |
240.0 |
240.0 |
| H15 |
C18 |
C16 |
H17 |
120.0 |
119.9 |
| H16 |
C18 |
C16 |
H17 |
240.0 |
239.9 |
| C7 |
C6 |
C5 |
H3 |
182.4 |
180.0 |
| C6 |
C7 |
C8 |
C9 |
3.6 |
0.0 |
| C6 |
C7 |
C8 |
H5 |
183.7 |
180.0 |
| C6 |
C5 |
C4 |
C9 |
357.9 |
359.9 |
| C8 |
C7 |
C6 |
H4 |
176.8 |
180.0 |
| C4 |
C9 |
C8 |
C7 |
356.7 |
360.0 |
| C9 |
C8 |
C7 |
H5 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
H6 |
176.7 |
180.3 |
| C5 |
C4 |
C9 |
C8 |
2.4 |
0.1 |
| C5 |
C4 |
C9 |
H6 |
182.4 |
179.8 |
| C7 |
C8 |
C9 |
H5 |
180.0 |
180.0 |
| C4 |
C9 |
C8 |
H6 |
180.0 |
179.7 |
| C7 |
C8 |
C9 |
C4 |
356.7 |
360.0 |
| C4 |
C9 |
C8 |
H5 |
176.7 |
180.0 |
| C8 |
C9 |
C4 |
H6 |
180.0 |
180.3 |
| O2 |
S1 |
N1 |
O3 |
230.4 |
227.1 |
| N1 |
S1 |
O2 |
O3 |
123.4 |
122.9 |
| H1 |
N1 |
S1 |
O3 |
60.3 |
156.4 |
| H2 |
N1 |
S1 |
O3 |
180.3 |
336.4 |
| H3 |
C5 |
C4 |
C9 |
178.0 |
180.0 |
| H4 |
C6 |
C7 |
C8 |
176.8 |
180.0 |
| H4 |
C6 |
C5 |
H3 |
2.4 |
359.9 |
| C7 |
C8 |
H5 |
C9 |
180.0 |
180.0 |
| H5 |
C8 |
C9 |
H6 |
356.7 |
0.3 |
| C4 |
C9 |
H6 |
C8 |
180.0 |
180.3 |
| H6 |
C9 |
C8 |
H5 |
356.7 |
0.3 |
| H8 |
C12 |
C11 |
H7 |
2.5 |
0.0 |
| H9 |
C13 |
C12 |
H8 |
358.0 |
0.0 |
| H9 |
C13 |
C14 |
C15 |
181.1 |
179.7 |
| H9 |
C13 |
C14 |
H10 |
1.1 |
0.0 |
| C13 |
C14 |
H10 |
C15 |
180.0 |
179.6 |
| H10 |
C14 |
C13 |
H9 |
1.1 |
0.0 |
| H10 |
C14 |
C15 |
C16 |
0.4 |
359.7 |
| C17 |
C16 |
H11 |
C18 |
119.8 |
120.0 |
| C15 |
C16 |
H11 |
C18 |
237.3 |
240.0 |
| H11 |
C16 |
C18 |
H15 |
302.0 |
300.0 |
| H11 |
C16 |
C18 |
H16 |
62.0 |
60.0 |
| H11 |
C16 |
C18 |
H17 |
182.0 |
180.1 |
| H12 |
C17 |
C16 |
C18 |
63.2 |
300.0 |
| H12 |
C17 |
C16 |
H11 |
301.3 |
180.0 |
| H13 |
C17 |
H12 |
H14 |
120.0 |
120.0 |
| H13 |
C17 |
C16 |
C18 |
183.2 |
60.0 |
| H13 |
C17 |
C16 |
H11 |
61.3 |
300.0 |
| H12 |
C17 |
H13 |
H14 |
240.1 |
240.0 |
| H14 |
C17 |
C16 |
C18 |
303.2 |
180.0 |
| H14 |
C17 |
C16 |
H11 |
181.3 |
60.0 |
| H12 |
C17 |
H14 |
H13 |
119.9 |
119.9 |
| H15 |
C18 |
C16 |
H11 |
302.0 |
300.0 |
| C16 |
C18 |
H15 |
H16 |
120.0 |
120.0 |
| C16 |
C18 |
H15 |
H17 |
240.0 |
240.0 |
| H16 |
C18 |
H15 |
H17 |
120.0 |
120.0 |
| H16 |
C18 |
C16 |
H11 |
62.0 |
60.0 |
| C16 |
C18 |
H16 |
H15 |
240.0 |
240.0 |
| C16 |
C18 |
H16 |
H17 |
120.0 |
120.1 |
| H15 |
C18 |
H16 |
H17 |
240.0 |
240.0 |
| H17 |
C18 |
C16 |
H11 |
182.0 |
180.1 |
| C16 |
C18 |
H17 |
H15 |
120.0 |
119.9 |
| C16 |
C18 |
H17 |
H16 |
240.0 |
239.9 |
| H15 |
C18 |
H17 |
H16 |
120.0 |
120.0 |