PDB Chemical Component 5CH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5CH
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N9 |
C10 |
1.349 |
1.317 |
N9 |
C8 |
1.366 |
1.326 |
C2 |
C1 |
1.413 |
1.383 |
C2 |
C3 |
1.414 |
1.380 |
C4 |
C5 |
1.401 |
1.394 |
C4 |
C3 |
1.418 |
1.394 |
C4 |
C7 |
1.511 |
1.483 |
C5 |
C6 |
1.408 |
1.380 |
C6 |
C1 |
1.417 |
1.383 |
O24 |
S21 |
1.454 |
1.421 |
S21 |
O23 |
1.456 |
1.421 |
S21 |
C22 |
1.677 |
1.814 |
S21 |
C1 |
1.624 |
1.762 |
C7 |
C12 |
1.391 |
1.396 |
C7 |
C8 |
1.514 |
1.404 |
C12 |
C11 |
1.397 |
1.385 |
C11 |
CL20 |
1.790 |
1.736 |
C11 |
C10 |
1.404 |
1.386 |
C8 |
C13 |
1.485 |
1.482 |
C13 |
C18 |
1.390 |
1.398 |
C13 |
C14 |
1.405 |
1.395 |
C18 |
C17 |
1.396 |
1.384 |
C17 |
C16 |
1.397 |
1.383 |
C16 |
C19 |
1.502 |
1.507 |
C16 |
N15 |
1.365 |
1.320 |
N15 |
C14 |
1.344 |
1.316 |
C2 |
H2 |
1.080 |
1.079 |
C5 |
H5 |
1.080 |
1.080 |
C6 |
H6 |
1.080 |
1.080 |
C22 |
H22 |
1.101 |
1.090 |
C22 |
H22A |
1.100 |
1.090 |
C22 |
H22B |
1.100 |
1.090 |
C3 |
H3 |
1.080 |
1.080 |
C12 |
H12 |
1.080 |
1.080 |
C10 |
H10 |
1.081 |
1.080 |
C18 |
H18 |
1.080 |
1.079 |
C17 |
H17 |
1.080 |
1.079 |
C19 |
H19 |
1.100 |
1.090 |
C19 |
H19A |
1.100 |
1.090 |
C19 |
H19B |
1.100 |
1.090 |
C14 |
H14 |
1.080 |
1.080 |
Bond Angles for 5CH
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C10 |
N9 |
C8 |
121.1 |
121.8 |
N9 |
C10 |
C11 |
120.2 |
121.1 |
N9 |
C10 |
H10 |
119.9 |
119.4 |
N9 |
C8 |
C7 |
120.5 |
120.4 |
N9 |
C8 |
C13 |
118.1 |
119.8 |
C1 |
C2 |
C3 |
119.9 |
120.1 |
C2 |
C1 |
C6 |
118.4 |
120.3 |
C2 |
C1 |
S21 |
122.3 |
119.9 |
C1 |
C2 |
H2 |
120.1 |
120.0 |
C2 |
C3 |
C4 |
121.3 |
119.8 |
C3 |
C2 |
H2 |
120.1 |
119.9 |
C2 |
C3 |
H3 |
119.3 |
120.1 |
C5 |
C4 |
C3 |
118.6 |
119.8 |
C5 |
C4 |
C7 |
120.1 |
120.1 |
C4 |
C5 |
C6 |
120.3 |
119.9 |
C4 |
C5 |
H5 |
119.8 |
120.1 |
C3 |
C4 |
C7 |
121.3 |
120.1 |
C4 |
C3 |
H3 |
119.3 |
120.1 |
C4 |
C7 |
C12 |
117.8 |
120.6 |
C4 |
C7 |
C8 |
125.9 |
120.6 |
C5 |
C6 |
C1 |
121.5 |
120.1 |
C6 |
C5 |
H5 |
119.9 |
120.0 |
C5 |
C6 |
H6 |
119.3 |
120.0 |
C6 |
C1 |
S21 |
119.3 |
119.9 |
C1 |
C6 |
H6 |
119.2 |
119.9 |
O24 |
S21 |
O23 |
108.6 |
121.0 |
O24 |
S21 |
C22 |
110.1 |
110.5 |
O24 |
S21 |
C1 |
109.0 |
104.3 |
O23 |
S21 |
C22 |
110.2 |
110.5 |
O23 |
S21 |
C1 |
111.8 |
104.3 |
C22 |
S21 |
C1 |
107.1 |
104.4 |
S21 |
C22 |
H22 |
109.5 |
109.5 |
S21 |
C22 |
H22A |
109.5 |
109.4 |
S21 |
C22 |
H22B |
109.5 |
109.5 |
C12 |
C7 |
C8 |
116.3 |
118.9 |
C7 |
C12 |
C11 |
119.8 |
118.4 |
C7 |
C12 |
H12 |
120.2 |
120.8 |
C7 |
C8 |
C13 |
121.3 |
119.8 |
C12 |
C11 |
CL20 |
118.2 |
120.3 |
C12 |
C11 |
C10 |
122.2 |
119.5 |
C11 |
C12 |
H12 |
120.1 |
120.8 |
CL20 |
C11 |
C10 |
119.6 |
120.3 |
C11 |
C10 |
H10 |
119.9 |
119.4 |
C8 |
C13 |
C18 |
121.7 |
120.6 |
C8 |
C13 |
C14 |
117.9 |
120.5 |
C18 |
C13 |
C14 |
120.4 |
118.9 |
C13 |
C18 |
C17 |
118.6 |
118.3 |
C13 |
C18 |
H18 |
120.7 |
120.9 |
C13 |
C14 |
N15 |
120.2 |
120.6 |
C13 |
C14 |
H14 |
119.9 |
119.7 |
C18 |
C17 |
C16 |
119.2 |
119.3 |
C17 |
C18 |
H18 |
120.7 |
120.8 |
C18 |
C17 |
H17 |
120.4 |
120.3 |
C17 |
C16 |
C19 |
118.7 |
119.5 |
C17 |
C16 |
N15 |
121.2 |
121.0 |
C16 |
C17 |
H17 |
120.4 |
120.3 |
C19 |
C16 |
N15 |
120.1 |
119.5 |
C16 |
C19 |
H19 |
109.5 |
109.5 |
C16 |
C19 |
H19A |
109.5 |
109.5 |
C16 |
C19 |
H19B |
109.5 |
109.5 |
C16 |
N15 |
C14 |
120.4 |
121.9 |
N15 |
C14 |
H14 |
119.9 |
119.7 |
H22 |
C22 |
H22A |
109.4 |
109.5 |
H22 |
C22 |
H22B |
109.4 |
109.5 |
H22A |
C22 |
H22B |
109.5 |
109.5 |
H19 |
C19 |
H19A |
109.5 |
109.4 |
H19 |
C19 |
H19B |
109.4 |
109.4 |
H19A |
C19 |
H19B |
109.5 |
109.5 |
Torsion Angles for 5CH
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C10 |
N9 |
C8 |
C7 |
359.6 |
0.0 |
C10 |
N9 |
C8 |
C13 |
181.5 |
180.0 |
C12 |
C11 |
C10 |
N9 |
359.7 |
360.0 |
CL20 |
C11 |
C10 |
N9 |
179.3 |
180.0 |
C11 |
C10 |
N9 |
H10 |
180.0 |
180.0 |
C8 |
N9 |
C10 |
C11 |
0.4 |
360.0 |
C8 |
N9 |
C10 |
H10 |
180.4 |
180.0 |
C4 |
C7 |
C8 |
N9 |
180.1 |
180.0 |
C12 |
C7 |
C8 |
N9 |
0.4 |
0.0 |
C7 |
C8 |
N9 |
C13 |
178.0 |
180.0 |
N9 |
C8 |
C13 |
C18 |
306.9 |
325.0 |
N9 |
C8 |
C13 |
C14 |
125.3 |
144.7 |
C1 |
C2 |
C3 |
C4 |
359.7 |
359.9 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.3 |
C1 |
C2 |
C3 |
H3 |
179.7 |
180.0 |
C5 |
C6 |
C1 |
C2 |
0.7 |
360.0 |
C6 |
C1 |
C2 |
S21 |
178.8 |
180.1 |
C2 |
C1 |
C6 |
H6 |
180.7 |
179.9 |
O24 |
S21 |
C1 |
C2 |
221.0 |
334.0 |
O23 |
S21 |
C1 |
C2 |
341.0 |
206.1 |
C22 |
S21 |
C1 |
C2 |
101.9 |
90.0 |
C3 |
C2 |
C1 |
C6 |
359.3 |
0.1 |
C3 |
C2 |
C1 |
S21 |
180.5 |
180.0 |
C1 |
C2 |
C3 |
H2 |
180.0 |
179.7 |
C5 |
C4 |
C3 |
C2 |
1.2 |
0.1 |
C2 |
C3 |
C4 |
C7 |
179.3 |
180.0 |
C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
C5 |
1.2 |
0.1 |
C3 |
C4 |
C5 |
C7 |
178.1 |
180.0 |
C5 |
C4 |
C3 |
H3 |
181.2 |
180.0 |
C5 |
C4 |
C7 |
C12 |
120.5 |
309.9 |
C5 |
C4 |
C7 |
C8 |
300.9 |
130.0 |
C4 |
C5 |
C6 |
C1 |
0.2 |
0.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
H6 |
180.2 |
180.0 |
C4 |
C3 |
C2 |
H2 |
179.7 |
180.2 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
C7 |
181.9 |
180.0 |
C3 |
C4 |
C5 |
C6 |
358.9 |
360.0 |
C3 |
C4 |
C5 |
H5 |
178.8 |
180.0 |
C3 |
C4 |
C7 |
C12 |
302.4 |
130.0 |
C3 |
C4 |
C7 |
C8 |
122.8 |
310.0 |
N9 |
C8 |
C7 |
C4 |
180.1 |
180.0 |
C5 |
C4 |
C7 |
C3 |
178.1 |
180.0 |
C7 |
C4 |
C5 |
C6 |
180.7 |
180.0 |
C7 |
C4 |
C5 |
H5 |
0.7 |
0.0 |
C7 |
C4 |
C3 |
H3 |
359.3 |
360.0 |
C12 |
C7 |
C4 |
C8 |
179.7 |
180.0 |
C4 |
C7 |
C12 |
C11 |
180.0 |
180.0 |
C4 |
C7 |
C12 |
H12 |
360.0 |
0.0 |
C4 |
C7 |
C8 |
C13 |
358.0 |
0.0 |
C2 |
C1 |
C6 |
C5 |
0.7 |
360.0 |
C6 |
C5 |
C4 |
C3 |
358.9 |
360.0 |
C6 |
C5 |
C4 |
C7 |
180.7 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
C5 |
C6 |
C1 |
S21 |
179.6 |
180.1 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C6 |
C1 |
C2 |
C3 |
359.3 |
0.1 |
C2 |
C1 |
C6 |
S21 |
181.1 |
179.9 |
C6 |
C1 |
C2 |
H2 |
179.4 |
179.8 |
C1 |
C6 |
C5 |
H5 |
180.2 |
180.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
O24 |
S21 |
C1 |
C6 |
42.1 |
153.9 |
O23 |
S21 |
C1 |
C6 |
162.2 |
26.0 |
C22 |
S21 |
C1 |
C6 |
283.1 |
269.9 |
C2 |
C1 |
S21 |
O24 |
221.0 |
334.0 |
C6 |
C1 |
S21 |
O24 |
42.1 |
153.9 |
O23 |
S21 |
O24 |
C22 |
120.8 |
228.5 |
O23 |
S21 |
O24 |
C1 |
238.0 |
116.8 |
C22 |
S21 |
O24 |
C1 |
117.2 |
248.3 |
O24 |
S21 |
C22 |
H22 |
240.8 |
51.6 |
O24 |
S21 |
C22 |
H22A |
0.7 |
171.7 |
O24 |
S21 |
C22 |
H22B |
120.8 |
291.6 |
C2 |
C1 |
S21 |
O23 |
341.0 |
206.1 |
C6 |
C1 |
S21 |
O23 |
162.2 |
26.0 |
O24 |
S21 |
O23 |
C22 |
239.3 |
131.4 |
O24 |
S21 |
O23 |
C1 |
120.3 |
243.2 |
C22 |
S21 |
O23 |
C1 |
241.0 |
111.7 |
O23 |
S21 |
C22 |
H22 |
121.0 |
188.3 |
O23 |
S21 |
C22 |
H22A |
241.0 |
308.4 |
O23 |
S21 |
C22 |
H22B |
1.0 |
68.3 |
C2 |
C1 |
S21 |
C22 |
101.9 |
90.0 |
C6 |
C1 |
S21 |
C22 |
283.1 |
269.9 |
O24 |
S21 |
C22 |
O23 |
119.8 |
223.3 |
O24 |
S21 |
C22 |
C1 |
241.6 |
111.7 |
O23 |
S21 |
C22 |
C1 |
121.8 |
248.3 |
H22 |
C22 |
S21 |
H22A |
240.0 |
240.0 |
H22 |
C22 |
S21 |
H22B |
120.0 |
120.0 |
H22A |
C22 |
S21 |
H22B |
240.0 |
240.1 |
S21 |
C1 |
C2 |
C3 |
180.5 |
180.0 |
C2 |
C1 |
S21 |
C6 |
178.8 |
180.1 |
S21 |
C1 |
C2 |
H2 |
0.5 |
359.7 |
S21 |
C1 |
C6 |
H6 |
359.6 |
0.0 |
O24 |
S21 |
C1 |
O23 |
239.9 |
127.9 |
O24 |
S21 |
C1 |
C22 |
119.1 |
243.9 |
O23 |
S21 |
C1 |
C22 |
239.2 |
116.1 |
C1 |
S21 |
C22 |
H22 |
359.2 |
300.0 |
C1 |
S21 |
C22 |
H22A |
119.2 |
60.0 |
C1 |
S21 |
C22 |
H22B |
239.2 |
180.0 |
N9 |
C8 |
C7 |
C12 |
0.4 |
0.0 |
C4 |
C7 |
C12 |
C8 |
180.3 |
180.0 |
C12 |
C7 |
C8 |
C13 |
178.3 |
180.1 |
C7 |
C12 |
C11 |
CL20 |
180.7 |
180.1 |
C7 |
C12 |
C11 |
C10 |
0.3 |
0.1 |
C11 |
C12 |
C7 |
H12 |
180.0 |
180.0 |
N9 |
C8 |
C7 |
C13 |
182.0 |
180.0 |
C4 |
C7 |
C8 |
C12 |
179.7 |
180.0 |
C8 |
C7 |
C12 |
C11 |
359.7 |
359.9 |
C8 |
C7 |
C12 |
H12 |
179.7 |
180.0 |
C7 |
C8 |
C13 |
C18 |
128.9 |
145.0 |
C7 |
C8 |
C13 |
C14 |
307.3 |
324.7 |
N9 |
C10 |
C11 |
C12 |
359.7 |
360.0 |
C11 |
C12 |
C7 |
C8 |
359.7 |
359.9 |
C7 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
CL20 |
C11 |
C12 |
C10 |
180.4 |
180.0 |
C12 |
C11 |
C10 |
H10 |
179.7 |
180.0 |
N9 |
C10 |
C11 |
CL20 |
179.3 |
180.0 |
C12 |
C11 |
CL20 |
C10 |
179.6 |
180.0 |
CL20 |
C11 |
C12 |
H12 |
0.7 |
0.0 |
CL20 |
C11 |
C10 |
H10 |
359.3 |
360.0 |
C11 |
C10 |
N9 |
C8 |
0.4 |
360.0 |
N9 |
C10 |
C11 |
H10 |
180.0 |
180.0 |
C12 |
C11 |
C10 |
CL20 |
180.4 |
180.0 |
C10 |
C11 |
C12 |
H12 |
180.3 |
180.0 |
N9 |
C8 |
C13 |
C7 |
178.0 |
180.0 |
C18 |
C13 |
C8 |
C14 |
181.6 |
180.3 |
C8 |
C13 |
C18 |
C17 |
179.9 |
180.0 |
C8 |
C13 |
C18 |
H18 |
359.9 |
360.0 |
C8 |
C13 |
C14 |
N15 |
180.2 |
179.7 |
C8 |
C13 |
C14 |
H14 |
0.2 |
0.1 |
C8 |
C13 |
C18 |
C14 |
178.4 |
179.7 |
C18 |
C13 |
C14 |
N15 |
358.6 |
359.4 |
C18 |
C13 |
C14 |
H14 |
178.6 |
179.8 |
C13 |
C18 |
C17 |
C16 |
359.0 |
0.1 |
C17 |
C18 |
C13 |
H18 |
180.0 |
180.0 |
C13 |
C18 |
C17 |
H17 |
179.0 |
180.0 |
C8 |
C13 |
C14 |
C18 |
181.6 |
180.3 |
C14 |
C13 |
C18 |
C17 |
1.5 |
0.3 |
C14 |
C13 |
C18 |
H18 |
181.5 |
180.3 |
C16 |
N15 |
C14 |
C13 |
0.7 |
0.6 |
N15 |
C14 |
C13 |
H14 |
180.0 |
179.6 |
C17 |
C18 |
C13 |
C14 |
1.5 |
0.3 |
C13 |
C18 |
C17 |
H18 |
180.0 |
180.0 |
C18 |
C17 |
C16 |
C19 |
180.3 |
180.0 |
C18 |
C17 |
C16 |
N15 |
0.4 |
359.9 |
C16 |
C17 |
C18 |
H17 |
180.0 |
180.1 |
C16 |
C17 |
C18 |
H18 |
179.0 |
180.0 |
C18 |
C17 |
C16 |
H17 |
180.0 |
179.9 |
C19 |
C16 |
C17 |
N15 |
179.9 |
180.1 |
C17 |
C16 |
C19 |
H19 |
248.3 |
89.9 |
C17 |
C16 |
C19 |
H19A |
8.3 |
209.9 |
C17 |
C16 |
C19 |
H19B |
128.3 |
330.0 |
C17 |
C16 |
N15 |
C14 |
359.8 |
359.8 |
C17 |
C16 |
C19 |
N15 |
180.1 |
179.9 |
C19 |
C16 |
C17 |
H17 |
0.3 |
0.1 |
C19 |
C16 |
N15 |
C14 |
179.9 |
179.7 |
H19 |
C19 |
C16 |
H19A |
240.0 |
240.0 |
H19 |
C19 |
C16 |
H19B |
120.0 |
120.0 |
H19A |
C19 |
C16 |
H19B |
240.0 |
239.9 |
C13 |
C14 |
N15 |
C16 |
0.7 |
0.6 |
C17 |
C16 |
N15 |
C19 |
179.9 |
180.1 |
N15 |
C16 |
C17 |
H17 |
180.3 |
180.0 |
N15 |
C16 |
C19 |
H19 |
68.2 |
270.0 |
N15 |
C16 |
C19 |
H19A |
188.2 |
30.0 |
N15 |
C16 |
C19 |
H19B |
308.2 |
150.0 |
C16 |
N15 |
C14 |
H14 |
180.7 |
180.2 |
C13 |
C14 |
N15 |
H14 |
180.0 |
180.4 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.3 |
H2 |
C2 |
C1 |
C6 |
179.4 |
179.8 |
H2 |
C2 |
C1 |
S21 |
0.5 |
359.7 |
H2 |
C2 |
C3 |
C4 |
179.7 |
180.2 |
H2 |
C2 |
C3 |
H3 |
359.7 |
0.3 |
H5 |
C5 |
C4 |
C3 |
178.8 |
180.0 |
H5 |
C5 |
C4 |
C7 |
0.7 |
0.0 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
H5 |
C5 |
C6 |
C1 |
180.2 |
180.0 |
H5 |
C5 |
C6 |
H6 |
0.2 |
0.1 |
C5 |
C6 |
H6 |
C1 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
H5 |
0.2 |
0.1 |
H6 |
C6 |
C1 |
S21 |
359.6 |
0.0 |
H22 |
C22 |
S21 |
C1 |
359.2 |
300.0 |
S21 |
C22 |
H22 |
H22A |
120.0 |
120.0 |
S21 |
C22 |
H22 |
H22B |
240.0 |
240.0 |
H22A |
C22 |
H22 |
H22B |
120.0 |
120.0 |
H22A |
C22 |
S21 |
C1 |
119.2 |
60.0 |
S21 |
C22 |
H22A |
H22 |
240.0 |
240.0 |
S21 |
C22 |
H22A |
H22B |
120.0 |
119.9 |
H22 |
C22 |
H22A |
H22B |
240.0 |
240.0 |
H22B |
C22 |
S21 |
C1 |
239.2 |
180.0 |
S21 |
C22 |
H22B |
H22 |
120.0 |
120.0 |
S21 |
C22 |
H22B |
H22A |
240.0 |
240.1 |
H22 |
C22 |
H22B |
H22A |
120.0 |
120.1 |
C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
H3 |
C3 |
C2 |
H2 |
359.7 |
0.3 |
H3 |
C3 |
C4 |
C7 |
359.3 |
360.0 |
H12 |
C12 |
C7 |
C8 |
179.7 |
180.0 |
C7 |
C12 |
H12 |
C11 |
180.0 |
180.0 |
H12 |
C12 |
C11 |
CL20 |
0.7 |
0.0 |
H12 |
C12 |
C11 |
C10 |
180.3 |
180.0 |
H10 |
C10 |
N9 |
C8 |
180.4 |
180.0 |
N9 |
C10 |
H10 |
C11 |
180.0 |
180.0 |
H18 |
C18 |
C13 |
C14 |
181.5 |
180.3 |
C13 |
C18 |
H18 |
C17 |
180.0 |
180.0 |
H18 |
C18 |
C17 |
C16 |
179.0 |
180.0 |
H18 |
C18 |
C17 |
H17 |
359.0 |
359.9 |
C18 |
C17 |
H17 |
C16 |
180.0 |
180.1 |
H17 |
C17 |
C18 |
H18 |
359.0 |
359.9 |
H17 |
C17 |
C16 |
C19 |
0.3 |
0.1 |
H17 |
C17 |
C16 |
N15 |
180.3 |
180.0 |
H19 |
C19 |
C16 |
N15 |
68.2 |
270.0 |
C16 |
C19 |
H19 |
H19A |
120.0 |
120.0 |
C16 |
C19 |
H19 |
H19B |
240.0 |
240.0 |
H19A |
C19 |
H19 |
H19B |
120.0 |
120.0 |
H19A |
C19 |
C16 |
N15 |
188.2 |
30.0 |
C16 |
C19 |
H19A |
H19 |
240.0 |
240.0 |
C16 |
C19 |
H19A |
H19B |
120.0 |
120.0 |
H19 |
C19 |
H19A |
H19B |
240.0 |
240.0 |
H19B |
C19 |
C16 |
N15 |
308.2 |
150.0 |
C16 |
C19 |
H19B |
H19 |
120.0 |
120.0 |
C16 |
C19 |
H19B |
H19A |
240.0 |
240.0 |
H19 |
C19 |
H19B |
H19A |
120.0 |
119.9 |
C13 |
C14 |
H14 |
N15 |
180.0 |
179.6 |