PDB Chemical Component 5BX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5BX
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O06 |
C05 |
1.219 |
1.215 |
| C10 |
C09 |
1.505 |
1.530 |
| C05 |
N04 |
1.368 |
1.332 |
| C05 |
C07 |
1.478 |
1.516 |
| N04 |
C03 |
1.417 |
1.313 |
| C09 |
C07 |
1.507 |
1.530 |
| C09 |
C11 |
1.529 |
1.507 |
| C01 |
N02 |
1.504 |
1.465 |
| C07 |
O08 |
1.400 |
1.461 |
| C03 |
N02 |
1.419 |
1.360 |
| C03 |
O08 |
1.406 |
1.344 |
| C18 |
C17 |
1.419 |
1.366 |
| C18 |
C19 |
1.435 |
1.397 |
| C11 |
C19 |
1.442 |
1.465 |
| C11 |
C12 |
1.420 |
1.342 |
| C17 |
C16 |
1.451 |
1.388 |
| C19 |
C14 |
1.407 |
1.406 |
| C12 |
N13 |
1.372 |
1.368 |
| C16 |
C15 |
1.395 |
1.378 |
| C14 |
N13 |
1.400 |
1.377 |
| C14 |
C15 |
1.442 |
1.391 |
| C01 |
H011 |
1.100 |
1.089 |
| C01 |
H013 |
1.100 |
1.090 |
| C01 |
H012 |
1.100 |
1.090 |
| N02 |
H021 |
1.000 |
0.970 |
| C07 |
H071 |
1.100 |
1.091 |
| C09 |
H091 |
1.100 |
1.091 |
| C10 |
H103 |
1.100 |
1.090 |
| C10 |
H101 |
1.100 |
1.089 |
| C10 |
H102 |
1.100 |
1.091 |
| C12 |
H121 |
1.080 |
1.079 |
| N13 |
H131 |
1.000 |
0.970 |
| C15 |
H151 |
1.080 |
1.080 |
| C16 |
H161 |
1.080 |
1.080 |
| C17 |
H171 |
1.079 |
1.081 |
| C18 |
H181 |
1.080 |
1.080 |
Bond Angles for 5BX
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O06 |
C05 |
C07 |
127.1 |
127.2 |
| C10 |
C09 |
C11 |
113.5 |
109.4 |
| C10 |
C09 |
H091 |
105.9 |
109.5 |
| C05 |
C07 |
O08 |
106.9 |
103.3 |
| C05 |
C07 |
H071 |
110.0 |
110.7 |
| N04 |
C03 |
O08 |
108.8 |
112.8 |
| C09 |
C07 |
H071 |
109.6 |
110.7 |
| C09 |
C11 |
C19 |
125.2 |
126.5 |
| C09 |
C11 |
C12 |
126.7 |
126.5 |
| C11 |
C09 |
H091 |
105.6 |
109.5 |
| N02 |
C01 |
H011 |
109.5 |
109.5 |
| N02 |
C01 |
H013 |
109.5 |
109.4 |
| N02 |
C01 |
H012 |
109.5 |
109.5 |
| C01 |
N02 |
H021 |
118.5 |
120.0 |
| C03 |
O08 |
C07 |
107.5 |
106.3 |
| O08 |
C07 |
H071 |
111.1 |
110.5 |
| C03 |
N02 |
H021 |
118.5 |
120.0 |
| C18 |
C17 |
H171 |
120.3 |
119.7 |
| C11 |
C19 |
C18 |
134.0 |
134.0 |
| C19 |
C18 |
H181 |
119.9 |
120.1 |
| C12 |
C11 |
C19 |
108.0 |
107.0 |
| C11 |
C19 |
C14 |
106.1 |
106.1 |
| C11 |
C12 |
N13 |
107.4 |
109.9 |
| C11 |
C12 |
H121 |
126.3 |
125.0 |
| C17 |
C16 |
H161 |
120.1 |
119.7 |
| N13 |
C12 |
H121 |
126.3 |
125.0 |
| C12 |
N13 |
H131 |
125.0 |
125.1 |
| C16 |
C15 |
H151 |
119.7 |
120.1 |
| C14 |
N13 |
H131 |
125.0 |
125.0 |
| C14 |
C15 |
H151 |
119.7 |
120.1 |
| H011 |
C01 |
H013 |
109.5 |
109.5 |
| H011 |
C01 |
H012 |
109.5 |
109.5 |
| H013 |
C01 |
H012 |
109.5 |
109.4 |
| H103 |
C10 |
H101 |
109.5 |
109.5 |
| H103 |
C10 |
H102 |
109.5 |
109.5 |
| H101 |
C10 |
H102 |
109.5 |
109.5 |
Torsion Angles for 5BX
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O06 |
C05 |
C07 |
O08 |
190.6 |
179.8 |
| O06 |
C05 |
C07 |
H071 |
69.9 |
61.6 |
| C10 |
C09 |
C07 |
H071 |
188.4 |
176.9 |
| C10 |
C09 |
C11 |
C19 |
102.3 |
120.0 |
| C10 |
C09 |
C11 |
C12 |
283.6 |
300.3 |
| C11 |
C09 |
C10 |
H091 |
244.6 |
240.0 |
| C05 |
N04 |
C03 |
O08 |
0.1 |
0.2 |
| C09 |
C07 |
C05 |
H071 |
240.1 |
236.9 |
| C03 |
O08 |
C07 |
C05 |
350.2 |
0.4 |
| O08 |
C07 |
C05 |
H071 |
120.7 |
118.2 |
| N04 |
C03 |
O08 |
C07 |
6.3 |
359.6 |
| N04 |
C03 |
N02 |
H021 |
180.4 |
180.3 |
| C05 |
C07 |
C09 |
H071 |
120.1 |
123.1 |
| O08 |
C07 |
C09 |
H071 |
237.2 |
237.1 |
| C10 |
C09 |
C11 |
H091 |
115.6 |
120.0 |
| C11 |
C09 |
C07 |
H071 |
58.7 |
56.9 |
| C09 |
C11 |
C19 |
C18 |
0.9 |
0.8 |
| C12 |
C11 |
C09 |
C19 |
181.3 |
180.2 |
| C09 |
C11 |
C19 |
C14 |
180.5 |
179.8 |
| C09 |
C11 |
C12 |
N13 |
179.5 |
180.0 |
| C09 |
C11 |
C12 |
H121 |
359.5 |
0.0 |
| C03 |
N02 |
C01 |
H021 |
180.0 |
180.0 |
| H011 |
C01 |
N02 |
H013 |
240.0 |
240.0 |
| H011 |
C01 |
N02 |
H012 |
120.0 |
120.0 |
| H013 |
C01 |
N02 |
H012 |
240.0 |
240.1 |
| C05 |
C07 |
O08 |
H071 |
240.1 |
241.6 |
| C09 |
C07 |
O08 |
H071 |
121.9 |
123.1 |
| C03 |
N02 |
C01 |
H011 |
180.0 |
180.0 |
| C03 |
N02 |
C01 |
H013 |
300.0 |
300.0 |
| C03 |
N02 |
C01 |
H012 |
60.0 |
60.0 |
| C01 |
N02 |
C03 |
H021 |
180.0 |
180.0 |
| C05 |
C07 |
O08 |
C03 |
350.2 |
0.4 |
| C03 |
O08 |
C07 |
H071 |
110.1 |
118.7 |
| O08 |
C03 |
N02 |
H021 |
0.6 |
0.0 |
| C11 |
C19 |
C18 |
C17 |
180.0 |
179.6 |
| C18 |
C17 |
C16 |
H161 |
181.1 |
180.0 |
| C19 |
C18 |
C17 |
H171 |
178.9 |
179.7 |
| C12 |
C11 |
C19 |
C18 |
179.8 |
180.6 |
| C11 |
C19 |
C18 |
C14 |
179.6 |
179.0 |
| C09 |
C11 |
C19 |
C12 |
181.1 |
180.2 |
| C19 |
C11 |
C09 |
H091 |
346.7 |
0.0 |
| C11 |
C19 |
C18 |
H181 |
0.1 |
359.3 |
| C19 |
C11 |
C12 |
N13 |
0.7 |
0.2 |
| C19 |
C11 |
C12 |
H121 |
180.7 |
180.2 |
| C09 |
C11 |
C12 |
C19 |
178.9 |
179.8 |
| C12 |
C11 |
C09 |
H091 |
168.0 |
180.3 |
| C12 |
C11 |
C19 |
C14 |
359.4 |
359.6 |
| N13 |
C12 |
C11 |
H121 |
180.0 |
180.0 |
| C11 |
C12 |
N13 |
H131 |
179.5 |
180.0 |
| C17 |
C16 |
C15 |
H151 |
179.4 |
180.0 |
| C11 |
C19 |
C14 |
C18 |
180.3 |
180.8 |
| C19 |
C14 |
N13 |
H131 |
180.1 |
179.7 |
| C19 |
C14 |
C15 |
H151 |
180.0 |
180.3 |
| N13 |
C12 |
C11 |
C19 |
0.7 |
0.2 |
| C11 |
C12 |
N13 |
H121 |
180.0 |
180.0 |
| C14 |
N13 |
C12 |
H131 |
180.0 |
179.9 |
| C14 |
C15 |
C16 |
H151 |
180.0 |
180.0 |
| C11 |
C19 |
C14 |
N13 |
0.3 |
0.4 |
| C14 |
N13 |
C12 |
H121 |
179.5 |
180.0 |
| C12 |
N13 |
C14 |
H131 |
180.0 |
180.1 |
| C11 |
C19 |
C14 |
C15 |
180.4 |
180.2 |
| C16 |
C15 |
C14 |
H151 |
180.0 |
180.0 |
| C15 |
C14 |
N13 |
H131 |
0.0 |
359.9 |
| N02 |
C01 |
H011 |
H013 |
120.0 |
120.0 |
| N02 |
C01 |
H011 |
H012 |
240.0 |
240.0 |
| H011 |
C01 |
N02 |
H021 |
360.0 |
360.0 |
| H013 |
C01 |
H011 |
H012 |
120.0 |
120.0 |
| N02 |
C01 |
H013 |
H011 |
240.0 |
240.0 |
| N02 |
C01 |
H013 |
H012 |
120.0 |
119.9 |
| H013 |
C01 |
N02 |
H021 |
120.0 |
120.0 |
| H011 |
C01 |
H013 |
H012 |
240.0 |
240.0 |
| N02 |
C01 |
H012 |
H011 |
120.0 |
120.0 |
| N02 |
C01 |
H012 |
H013 |
240.0 |
240.1 |
| H012 |
C01 |
N02 |
H021 |
240.0 |
240.0 |
| H011 |
C01 |
H012 |
H013 |
120.0 |
120.0 |
| H021 |
N02 |
C01 |
H011 |
360.0 |
360.0 |
| H021 |
N02 |
C01 |
H013 |
120.0 |
120.0 |
| H021 |
N02 |
C01 |
H012 |
240.0 |
240.0 |
| C05 |
C07 |
H071 |
O08 |
118.1 |
113.7 |
| C10 |
C09 |
H091 |
C11 |
239.3 |
240.0 |
| H091 |
C09 |
C07 |
H071 |
305.6 |
296.9 |
| H091 |
C09 |
C11 |
C19 |
346.7 |
0.0 |
| H091 |
C09 |
C11 |
C12 |
168.0 |
180.3 |
| H103 |
C10 |
C09 |
C11 |
307.4 |
180.0 |
| H103 |
C10 |
C09 |
H091 |
62.8 |
300.0 |
| H101 |
C10 |
H103 |
H102 |
120.0 |
120.1 |
| H101 |
C10 |
C09 |
C11 |
67.4 |
300.0 |
| H101 |
C10 |
C09 |
H091 |
182.8 |
60.0 |
| H103 |
C10 |
H101 |
H102 |
240.0 |
239.9 |
| H102 |
C10 |
C09 |
C11 |
187.4 |
60.1 |
| H102 |
C10 |
C09 |
H091 |
302.8 |
180.0 |
| H103 |
C10 |
H102 |
H101 |
120.0 |
120.1 |
| H121 |
C12 |
C11 |
C19 |
180.7 |
180.2 |
| C11 |
C12 |
H121 |
N13 |
180.0 |
180.0 |
| H121 |
C12 |
N13 |
H131 |
359.5 |
0.0 |
| H131 |
N13 |
C12 |
H121 |
359.5 |
0.0 |
| H161 |
C16 |
C15 |
H151 |
359.4 |
0.0 |
| H171 |
C17 |
C16 |
H161 |
1.1 |
360.0 |
| H181 |
C18 |
C17 |
H171 |
358.9 |
360.0 |