PDB Chemical Component 5BV
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5BV
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
C32 |
1.448 |
1.468 |
O34 |
C33 |
1.234 |
1.208 |
O |
C |
1.228 |
1.209 |
C33 |
C32 |
1.523 |
1.507 |
C33 |
O35 |
1.314 |
1.342 |
C |
C43 |
1.548 |
1.506 |
O35 |
C36 |
1.448 |
1.452 |
C36 |
C43 |
1.507 |
1.530 |
C36 |
C37 |
1.524 |
1.530 |
C38 |
C37 |
1.524 |
1.530 |
C38 |
C39 |
1.528 |
1.530 |
C43 |
C44 |
1.529 |
1.529 |
C39 |
C40 |
1.529 |
1.530 |
C40 |
C41 |
1.528 |
1.529 |
C41 |
C42 |
1.527 |
1.530 |
N |
H |
1.000 |
1.009 |
N |
H2 |
1.000 |
1.009 |
C32 |
H4 |
1.100 |
1.090 |
C32 |
H5 |
1.100 |
1.091 |
C36 |
H6 |
1.100 |
1.090 |
C37 |
H7 |
1.100 |
1.090 |
C37 |
H8 |
1.100 |
1.090 |
C38 |
H9 |
1.100 |
1.090 |
C38 |
H10 |
1.100 |
1.090 |
C39 |
H11 |
1.100 |
1.090 |
C39 |
H12 |
1.100 |
1.090 |
C40 |
H13 |
1.100 |
1.090 |
C40 |
H14 |
1.100 |
1.091 |
C41 |
H15 |
1.100 |
1.090 |
C41 |
H16 |
1.100 |
1.090 |
C42 |
H17 |
1.101 |
1.089 |
C42 |
H18 |
1.100 |
1.090 |
C42 |
H19 |
1.100 |
1.090 |
C43 |
H20 |
1.099 |
1.091 |
C44 |
H21 |
1.100 |
1.090 |
C44 |
H22 |
1.100 |
1.091 |
C44 |
H23 |
1.100 |
1.091 |
C |
OXT |
1.347 |
1.342 |
OXT |
HXT |
0.950 |
0.967 |
Bond Angles for 5BV
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C32 |
N |
H |
109.5 |
111.0 |
C32 |
N |
H2 |
109.5 |
111.0 |
N |
C32 |
H4 |
109.4 |
109.5 |
N |
C32 |
H5 |
109.3 |
109.5 |
O34 |
C33 |
C32 |
124.6 |
120.0 |
O34 |
C33 |
O35 |
123.4 |
120.0 |
O |
C |
C43 |
121.4 |
119.9 |
O |
C |
OXT |
121.0 |
120.0 |
C33 |
C32 |
H4 |
109.3 |
109.5 |
C33 |
C32 |
H5 |
109.3 |
109.5 |
C33 |
O35 |
C36 |
117.5 |
117.0 |
C |
C43 |
H20 |
108.7 |
109.5 |
O35 |
C36 |
C43 |
105.2 |
109.5 |
O35 |
C36 |
C37 |
107.8 |
109.5 |
O35 |
C36 |
H6 |
112.1 |
109.4 |
C37 |
C36 |
C43 |
109.3 |
109.5 |
C36 |
C43 |
C44 |
110.0 |
109.5 |
C43 |
C36 |
H6 |
111.2 |
109.5 |
C36 |
C43 |
H20 |
109.2 |
109.4 |
C37 |
C36 |
H6 |
111.0 |
109.4 |
C36 |
C37 |
H7 |
109.1 |
109.5 |
C36 |
C37 |
H8 |
109.1 |
109.4 |
C38 |
C37 |
H7 |
109.2 |
109.5 |
C38 |
C37 |
H8 |
109.1 |
109.5 |
C38 |
C39 |
C40 |
109.6 |
109.5 |
C39 |
C38 |
H9 |
109.7 |
109.5 |
C39 |
C38 |
H10 |
109.7 |
109.5 |
C38 |
C39 |
H11 |
109.4 |
109.5 |
C38 |
C39 |
H12 |
109.4 |
109.5 |
C44 |
C43 |
H20 |
108.9 |
109.5 |
C43 |
C44 |
H21 |
109.5 |
109.5 |
C43 |
C44 |
H22 |
109.5 |
109.5 |
C43 |
C44 |
H23 |
109.4 |
109.5 |
C39 |
C40 |
C41 |
109.6 |
109.5 |
C40 |
C39 |
H11 |
109.4 |
109.5 |
C40 |
C39 |
H12 |
109.4 |
109.5 |
C39 |
C40 |
H13 |
109.4 |
109.5 |
C39 |
C40 |
H14 |
109.4 |
109.4 |
C40 |
C41 |
C42 |
109.1 |
109.5 |
C41 |
C40 |
H13 |
109.4 |
109.5 |
C41 |
C40 |
H14 |
109.4 |
109.5 |
C40 |
C41 |
H15 |
109.6 |
109.5 |
C40 |
C41 |
H16 |
109.6 |
109.5 |
C42 |
C41 |
H15 |
109.6 |
109.5 |
C42 |
C41 |
H16 |
109.6 |
109.5 |
C41 |
C42 |
H17 |
109.5 |
109.5 |
C41 |
C42 |
H18 |
109.5 |
109.5 |
C41 |
C42 |
H19 |
109.5 |
109.5 |
H |
N |
H2 |
109.5 |
111.0 |
H4 |
C32 |
H5 |
109.5 |
109.4 |
H7 |
C37 |
H8 |
109.5 |
109.5 |
H9 |
C38 |
H10 |
109.5 |
109.4 |
H11 |
C39 |
H12 |
109.5 |
109.4 |
H13 |
C40 |
H14 |
109.5 |
109.5 |
H15 |
C41 |
H16 |
109.4 |
109.4 |
H17 |
C42 |
H18 |
109.4 |
109.5 |
H17 |
C42 |
H19 |
109.5 |
109.5 |
H18 |
C42 |
H19 |
109.5 |
109.4 |
H21 |
C44 |
H22 |
109.5 |
109.5 |
H21 |
C44 |
H23 |
109.5 |
109.4 |
H22 |
C44 |
H23 |
109.4 |
109.4 |
C |
OXT |
HXT |
109.5 |
117.0 |
Torsion Angles for 5BV
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O34 |
C33 |
C32 |
N |
316.5 |
360.0 |
C33 |
C32 |
N |
H4 |
239.9 |
240.0 |
C33 |
C32 |
N |
H5 |
120.1 |
120.0 |
H |
N |
C32 |
H2 |
240.0 |
236.0 |
H4 |
C32 |
N |
H5 |
240.2 |
240.0 |
O34 |
C33 |
C32 |
H4 |
196.4 |
240.0 |
O34 |
C33 |
C32 |
H5 |
76.6 |
120.0 |
O34 |
C33 |
O35 |
C36 |
341.3 |
0.1 |
O |
C |
C43 |
H20 |
177.1 |
120.0 |
O |
C |
OXT |
HXT |
360.0 |
360.0 |
C33 |
C32 |
N |
H |
180.0 |
56.1 |
C33 |
C32 |
N |
H2 |
300.0 |
180.0 |
N |
C32 |
C33 |
H4 |
120.1 |
120.0 |
N |
C32 |
C33 |
H5 |
239.9 |
239.9 |
O34 |
C33 |
C32 |
O35 |
181.1 |
180.0 |
C32 |
C33 |
O35 |
C36 |
162.4 |
180.0 |
H4 |
C32 |
C33 |
H5 |
119.8 |
119.9 |
O34 |
C33 |
O35 |
C32 |
178.9 |
180.0 |
C33 |
O35 |
C36 |
C43 |
164.6 |
89.9 |
C33 |
O35 |
C36 |
C37 |
281.2 |
210.0 |
C33 |
O35 |
C36 |
H6 |
43.6 |
329.9 |
O |
C |
C43 |
OXT |
178.7 |
180.0 |
C |
C43 |
C36 |
H6 |
66.7 |
60.1 |
C36 |
C43 |
C |
H20 |
119.9 |
119.9 |
C44 |
C43 |
C |
H20 |
241.2 |
240.0 |
C |
C43 |
C44 |
H21 |
180.0 |
300.0 |
C |
C43 |
C44 |
H22 |
300.0 |
60.0 |
C |
C43 |
C44 |
H23 |
60.0 |
180.0 |
C37 |
C36 |
O35 |
C43 |
116.5 |
120.0 |
O35 |
C36 |
C43 |
C44 |
184.1 |
180.0 |
C43 |
C36 |
O35 |
H6 |
121.0 |
120.0 |
O35 |
C36 |
C43 |
H20 |
64.6 |
60.0 |
C37 |
C36 |
O35 |
H6 |
237.5 |
240.1 |
O35 |
C36 |
C37 |
H7 |
246.6 |
185.0 |
O35 |
C36 |
C37 |
H8 |
6.2 |
305.0 |
O |
C |
C43 |
C36 |
297.0 |
239.9 |
C |
C43 |
C36 |
H20 |
240.4 |
240.0 |
O35 |
C36 |
C43 |
C37 |
115.5 |
120.0 |
O35 |
C36 |
C43 |
H6 |
238.4 |
240.0 |
C37 |
C36 |
C43 |
H6 |
122.9 |
120.0 |
C43 |
C36 |
C37 |
H7 |
0.5 |
305.0 |
C43 |
C36 |
C37 |
H8 |
120.0 |
65.0 |
C44 |
C43 |
C36 |
H20 |
119.5 |
120.0 |
C36 |
C43 |
C44 |
H21 |
301.7 |
60.0 |
C36 |
C43 |
C44 |
H22 |
61.7 |
180.1 |
C36 |
C43 |
C44 |
H23 |
181.6 |
300.0 |
O35 |
C36 |
C37 |
C43 |
246.2 |
239.9 |
O35 |
C36 |
C37 |
H6 |
123.2 |
119.9 |
C37 |
C36 |
C43 |
C44 |
68.6 |
60.0 |
C43 |
C36 |
C37 |
H6 |
237.0 |
240.0 |
C37 |
C36 |
C43 |
H20 |
309.1 |
300.0 |
C38 |
C37 |
C36 |
H7 |
239.8 |
240.0 |
C38 |
C37 |
C36 |
H8 |
120.2 |
120.0 |
H7 |
C37 |
C36 |
H8 |
240.4 |
240.0 |
C38 |
C37 |
C36 |
C43 |
240.2 |
185.0 |
C38 |
C37 |
C36 |
H6 |
3.2 |
305.0 |
C36 |
C37 |
C38 |
H7 |
120.2 |
120.0 |
C36 |
C37 |
C38 |
H8 |
239.8 |
240.0 |
H7 |
C37 |
C38 |
H8 |
119.6 |
120.0 |
C39 |
C38 |
C37 |
H7 |
39.0 |
60.0 |
C39 |
C38 |
C37 |
H8 |
279.4 |
300.0 |
C38 |
C39 |
C40 |
C41 |
191.4 |
180.0 |
C40 |
C39 |
C38 |
H11 |
240.0 |
240.0 |
C40 |
C39 |
C38 |
H12 |
120.0 |
120.0 |
C38 |
C39 |
C40 |
H13 |
311.4 |
300.0 |
C38 |
C39 |
C40 |
H14 |
71.4 |
60.0 |
H9 |
C38 |
C39 |
H10 |
120.3 |
120.0 |
H11 |
C39 |
C38 |
H12 |
240.0 |
240.0 |
O |
C |
C43 |
C44 |
58.3 |
360.0 |
C |
C43 |
C44 |
H20 |
118.7 |
120.0 |
C44 |
C43 |
C36 |
H6 |
305.7 |
300.0 |
C36 |
C43 |
C44 |
H20 |
240.3 |
240.0 |
H21 |
C44 |
C43 |
H22 |
240.0 |
239.9 |
H21 |
C44 |
C43 |
H23 |
120.0 |
120.0 |
H22 |
C44 |
C43 |
H23 |
240.0 |
240.0 |
C40 |
C39 |
C38 |
H9 |
307.1 |
60.0 |
C40 |
C39 |
C38 |
H10 |
186.8 |
300.0 |
C38 |
C39 |
C40 |
H11 |
120.0 |
120.0 |
C38 |
C39 |
C40 |
H12 |
240.0 |
240.0 |
C39 |
C40 |
C41 |
C42 |
168.2 |
180.0 |
C41 |
C40 |
C39 |
H13 |
240.0 |
240.0 |
C41 |
C40 |
C39 |
H14 |
120.0 |
120.0 |
C39 |
C40 |
C41 |
H15 |
288.1 |
300.0 |
C39 |
C40 |
C41 |
H16 |
48.2 |
60.0 |
H11 |
C39 |
C40 |
H12 |
120.0 |
120.0 |
H13 |
C40 |
C39 |
H14 |
240.1 |
240.0 |
C41 |
C40 |
C39 |
H11 |
71.4 |
60.0 |
C41 |
C40 |
C39 |
H12 |
311.4 |
300.0 |
C39 |
C40 |
C41 |
H13 |
120.0 |
120.0 |
C39 |
C40 |
C41 |
H14 |
240.0 |
240.0 |
C42 |
C41 |
C40 |
H15 |
240.0 |
240.0 |
C42 |
C41 |
C40 |
H16 |
120.0 |
120.0 |
C40 |
C41 |
C42 |
H17 |
180.0 |
300.0 |
C40 |
C41 |
C42 |
H18 |
300.0 |
60.0 |
C40 |
C41 |
C42 |
H19 |
60.0 |
180.0 |
H13 |
C40 |
C41 |
H14 |
120.0 |
120.0 |
H15 |
C41 |
C40 |
H16 |
239.9 |
240.0 |
C42 |
C41 |
C40 |
H13 |
48.1 |
60.0 |
C42 |
C41 |
C40 |
H14 |
288.2 |
300.0 |
C40 |
C41 |
C42 |
H15 |
120.0 |
120.0 |
C40 |
C41 |
C42 |
H16 |
240.0 |
240.0 |
H15 |
C41 |
C42 |
H16 |
120.1 |
120.0 |
H17 |
C42 |
C41 |
H18 |
240.0 |
240.0 |
H17 |
C42 |
C41 |
H19 |
120.0 |
120.0 |
H18 |
C42 |
C41 |
H19 |
240.0 |
240.1 |
C32 |
N |
H |
H2 |
120.0 |
124.0 |
H |
N |
C32 |
H4 |
300.1 |
176.1 |
H |
N |
C32 |
H5 |
59.9 |
296.0 |
C32 |
N |
H2 |
H |
239.9 |
236.0 |
H2 |
N |
C32 |
H4 |
60.1 |
300.0 |
H2 |
N |
C32 |
H5 |
180.0 |
60.0 |
H4 |
C32 |
N |
H |
300.1 |
176.1 |
H4 |
C32 |
N |
H2 |
60.1 |
300.0 |
N |
C32 |
H4 |
H5 |
119.8 |
120.0 |
C33 |
C32 |
H4 |
H5 |
240.2 |
240.0 |
H5 |
C32 |
N |
H |
59.9 |
296.0 |
H5 |
C32 |
N |
H2 |
180.0 |
60.0 |
N |
C32 |
H5 |
H4 |
240.2 |
240.0 |
C33 |
C32 |
H5 |
H4 |
119.8 |
120.0 |
O35 |
C36 |
H6 |
C43 |
117.5 |
120.0 |
O35 |
C36 |
H6 |
C37 |
239.3 |
240.1 |
C37 |
C36 |
H6 |
C43 |
238.1 |
240.0 |
H6 |
C36 |
C43 |
C44 |
305.7 |
300.0 |
H6 |
C36 |
C43 |
H20 |
186.2 |
180.0 |
H6 |
C36 |
C37 |
H7 |
123.5 |
65.0 |
H6 |
C36 |
C37 |
H8 |
243.1 |
185.0 |
H7 |
C37 |
C36 |
C43 |
0.5 |
305.0 |
H7 |
C37 |
C36 |
H6 |
123.5 |
65.0 |
C36 |
C37 |
H7 |
H8 |
119.4 |
120.0 |
C38 |
C37 |
H7 |
H8 |
240.6 |
240.0 |
H8 |
C37 |
C36 |
C43 |
120.0 |
65.0 |
H8 |
C37 |
C36 |
H6 |
243.1 |
185.0 |
C36 |
C37 |
H8 |
H7 |
240.6 |
240.0 |
C38 |
C37 |
H8 |
H7 |
119.4 |
120.0 |
H9 |
C38 |
C37 |
H7 |
158.9 |
180.0 |
H9 |
C38 |
C37 |
H8 |
39.3 |
60.0 |
H9 |
C38 |
C39 |
C40 |
307.1 |
60.0 |
C39 |
C38 |
H9 |
H10 |
239.6 |
240.0 |
H9 |
C38 |
C39 |
H11 |
67.1 |
180.0 |
H9 |
C38 |
C39 |
H12 |
187.1 |
300.0 |
H10 |
C38 |
C37 |
H7 |
279.2 |
300.0 |
H10 |
C38 |
C37 |
H8 |
159.6 |
180.0 |
H10 |
C38 |
C39 |
C40 |
186.8 |
300.0 |
C39 |
C38 |
H10 |
H9 |
120.4 |
120.0 |
H10 |
C38 |
C39 |
H11 |
306.8 |
60.0 |
H10 |
C38 |
C39 |
H12 |
66.8 |
180.0 |
C38 |
C39 |
H11 |
C40 |
239.8 |
240.0 |
H11 |
C39 |
C38 |
H9 |
67.1 |
180.0 |
H11 |
C39 |
C38 |
H10 |
306.8 |
60.0 |
C38 |
C39 |
H11 |
H12 |
119.9 |
120.0 |
H11 |
C39 |
C40 |
C41 |
71.4 |
60.0 |
C40 |
C39 |
H11 |
H12 |
240.1 |
240.0 |
H11 |
C39 |
C40 |
H13 |
191.4 |
180.0 |
H11 |
C39 |
C40 |
H14 |
311.3 |
300.0 |
C38 |
C39 |
H12 |
C40 |
120.1 |
120.0 |
H12 |
C39 |
C38 |
H9 |
187.1 |
300.0 |
H12 |
C39 |
C38 |
H10 |
66.8 |
180.0 |
C38 |
C39 |
H12 |
H11 |
240.1 |
240.0 |
H12 |
C39 |
C40 |
C41 |
311.4 |
300.0 |
C40 |
C39 |
H12 |
H11 |
119.9 |
120.0 |
H12 |
C39 |
C40 |
H13 |
71.4 |
60.0 |
H12 |
C39 |
C40 |
H14 |
191.4 |
180.0 |
C39 |
C40 |
H13 |
C41 |
239.8 |
240.0 |
H13 |
C40 |
C39 |
H11 |
191.4 |
180.0 |
H13 |
C40 |
C39 |
H12 |
71.4 |
60.0 |
C39 |
C40 |
H13 |
H14 |
119.9 |
120.0 |
H13 |
C40 |
C41 |
C42 |
48.1 |
60.0 |
C41 |
C40 |
H13 |
H14 |
240.1 |
240.0 |
H13 |
C40 |
C41 |
H15 |
168.1 |
180.0 |
H13 |
C40 |
C41 |
H16 |
288.1 |
300.0 |
C39 |
C40 |
H14 |
C41 |
120.1 |
120.0 |
H14 |
C40 |
C39 |
H11 |
311.3 |
300.0 |
H14 |
C40 |
C39 |
H12 |
191.4 |
180.0 |
C39 |
C40 |
H14 |
H13 |
240.1 |
240.0 |
H14 |
C40 |
C41 |
C42 |
288.2 |
300.0 |
C41 |
C40 |
H14 |
H13 |
119.9 |
120.0 |
H14 |
C40 |
C41 |
H15 |
48.1 |
60.0 |
H14 |
C40 |
C41 |
H16 |
168.2 |
179.9 |
C40 |
C41 |
H15 |
C42 |
240.3 |
240.0 |
H15 |
C41 |
C40 |
H13 |
168.1 |
180.0 |
H15 |
C41 |
C40 |
H14 |
48.1 |
60.0 |
C40 |
C41 |
H15 |
H16 |
120.2 |
120.0 |
C42 |
C41 |
H15 |
H16 |
239.8 |
240.0 |
H15 |
C41 |
C42 |
H17 |
60.0 |
180.0 |
H15 |
C41 |
C42 |
H18 |
180.0 |
300.0 |
H15 |
C41 |
C42 |
H19 |
300.0 |
60.0 |
C40 |
C41 |
H16 |
C42 |
119.7 |
120.0 |
H16 |
C41 |
C40 |
H13 |
288.1 |
300.0 |
H16 |
C41 |
C40 |
H14 |
168.2 |
179.9 |
C40 |
C41 |
H16 |
H15 |
239.8 |
240.0 |
C42 |
C41 |
H16 |
H15 |
120.1 |
120.0 |
H16 |
C41 |
C42 |
H17 |
300.0 |
60.0 |
H16 |
C41 |
C42 |
H18 |
60.0 |
180.1 |
H16 |
C41 |
C42 |
H19 |
180.0 |
300.0 |
H17 |
C42 |
C41 |
H15 |
60.0 |
180.0 |
H17 |
C42 |
C41 |
H16 |
300.0 |
60.0 |
C41 |
C42 |
H17 |
H18 |
120.0 |
120.0 |
C41 |
C42 |
H17 |
H19 |
240.0 |
240.0 |
H18 |
C42 |
H17 |
H19 |
120.0 |
120.0 |
H18 |
C42 |
C41 |
H15 |
180.0 |
300.0 |
H18 |
C42 |
C41 |
H16 |
60.0 |
180.1 |
C41 |
C42 |
H18 |
H17 |
240.0 |
240.0 |
C41 |
C42 |
H18 |
H19 |
120.0 |
120.0 |
H17 |
C42 |
H18 |
H19 |
240.0 |
240.0 |
H19 |
C42 |
C41 |
H15 |
300.0 |
60.0 |
H19 |
C42 |
C41 |
H16 |
180.0 |
300.0 |
C41 |
C42 |
H19 |
H17 |
120.0 |
120.0 |
C41 |
C42 |
H19 |
H18 |
240.0 |
240.0 |
H17 |
C42 |
H19 |
H18 |
120.0 |
120.0 |
C36 |
C43 |
H20 |
C44 |
120.2 |
120.0 |
H20 |
C43 |
C36 |
H6 |
186.2 |
180.0 |
H20 |
C43 |
C44 |
H21 |
61.3 |
179.9 |
H20 |
C43 |
C44 |
H22 |
181.4 |
300.0 |
H20 |
C43 |
C44 |
H23 |
301.3 |
60.0 |
H21 |
C44 |
C43 |
H20 |
61.3 |
179.9 |
C43 |
C44 |
H21 |
H22 |
120.0 |
120.0 |
C43 |
C44 |
H21 |
H23 |
240.0 |
240.0 |
H22 |
C44 |
H21 |
H23 |
120.0 |
120.0 |
H22 |
C44 |
C43 |
H20 |
181.4 |
300.0 |
C43 |
C44 |
H22 |
H21 |
240.0 |
240.0 |
C43 |
C44 |
H22 |
H23 |
120.0 |
120.0 |
H21 |
C44 |
H22 |
H23 |
240.0 |
240.0 |
H23 |
C44 |
C43 |
H20 |
301.3 |
60.0 |
C43 |
C44 |
H23 |
H21 |
120.0 |
120.0 |
C43 |
C44 |
H23 |
H22 |
240.0 |
240.0 |
H21 |
C44 |
H23 |
H22 |
120.0 |
120.0 |
O |
C |
OXT |
C43 |
181.3 |
180.0 |
OXT |
C |
C43 |
H20 |
358.5 |
300.0 |