PDB Chemical Component 5BU

Ideal Model

Chemical Description

Name 5-BROMO-URIDINE-5'-MONOPHOSPHATE
Formula C9 H12 Br N2 O9 P
Formal charge 0
Molecular weight 403.077 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 34
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3 HO3'
Bond count 35
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-bromouridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(5-bromo-2,4-dioxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(Br)C(=O)NC2=O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=C(Br)C(=O)NC2=O
Stereo SMILES (OpenEye) C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)Br
InChI descriptor InChI=1S/C9H12BrN2O9P/c10-3-1-12(9(16)11-7(3)15)8-6(14)5(13)4(21-8)2-20-22(17,18)19/h1,4-6,8,13-14H,2H2,(H,11,15,16)(H2,17,18,19)/t4-,5-,6-,8-/m1/s1
InChIKey descriptor IDPVUMJNEZFMNU-UAKXSSHOSA-N

Status Information

Last modified 2011-06-04
Created 2003-11-05
Release status REL
Model PDB code 1JZV
Processing site RCSB