PDB Chemical Component 5B3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5B3

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	S1	1.449	1.421
C7	C6	1.398	1.381
C7	C8	1.410	1.393
O2	S1	1.449	1.421
C6	C5	1.397	1.383
C1	C2	1.523	1.530
N1	C2	1.493	1.464
N1	S1	1.699	1.656
C5	S1	1.782	1.763
C5	C10	1.402	1.383
C4	C2	1.535	1.530
C3	C2	1.531	1.530
C10	C9	1.399	1.380
C9	C8	1.418	1.393
C8	C11	1.466	1.484
C11	C17	1.412	1.386
C11	C12	1.414	1.401
C17	C16	1.411	1.396
C16	C15	1.422	1.464
C16	C14	1.397	1.408
C15	N4	1.350	1.398
C15	N3	1.336	1.307
N3	N2	1.344	1.397
N2	C14	1.376	1.370
C14	C13	1.403	1.395
C13	C12	1.406	1.364
C7	H7	1.080	1.080
C6	H6	1.081	1.080
C1	H1	1.100	1.090
C1	H1A	1.101	1.090
C1	H1B	1.100	1.089
N1	HN1	0.999	0.970
C4	H4	1.100	1.090
C4	H4A	1.100	1.090
C4	H4B	1.100	1.090
C3	H3	1.100	1.089
C3	H3A	1.100	1.090
C3	H3B	1.100	1.090
C10	H10	1.080	1.080
C9	H9	1.080	1.080
C17	H17	1.080	1.080
N4	HN4	1.000	0.970
N4	HN4A	1.000	0.971
N2	HN2	0.999	0.971
C13	H13	1.079	1.080
C12	H12	1.080	1.080

Bond Angles for 5B3

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	S1	O2	118.8	123.2
O1	S1	N1	115.7	106.4
O1	S1	C5	107.6	106.4
C6	C7	C8	120.4	119.8
C7	C6	C5	119.3	120.1
C6	C7	H7	119.8	120.1
C7	C6	H6	120.3	119.9
C7	C8	C9	119.2	119.8
C7	C8	C11	118.9	120.1
C8	C7	H7	119.8	120.1
O2	S1	N1	107.0	106.4
O2	S1	C5	108.1	106.4
C6	C5	S1	118.4	119.9
C6	C5	C10	121.6	120.3
C5	C6	H6	120.3	120.0
C1	C2	N1	107.4	109.5
C1	C2	C4	106.5	109.5
C1	C2	C3	110.1	109.5
C2	C1	H1	109.5	109.5
C2	C1	H1A	109.4	109.5
C2	C1	H1B	109.5	109.4
C2	N1	S1	130.3	120.0
N1	C2	C4	112.8	109.5
N1	C2	C3	110.9	109.4
C2	N1	HN1	103.0	120.1
N1	S1	C5	97.3	107.2
S1	N1	HN1	103.0	119.9
S1	C5	C10	120.0	119.9
C5	C10	C9	118.9	120.1
C5	C10	H10	120.5	119.9
C4	C2	C3	109.0	109.5
C2	C4	H4	109.5	109.5
C2	C4	H4A	109.5	109.5
C2	C4	H4B	109.5	109.5
C2	C3	H3	109.5	109.5
C2	C3	H3A	109.5	109.5
C2	C3	H3B	109.5	109.4
C10	C9	C8	120.5	119.9
C9	C10	H10	120.6	120.0
C10	C9	H9	119.8	120.0
C9	C8	C11	121.7	120.1
C8	C9	H9	119.7	120.1
C8	C11	C17	116.1	119.9
C8	C11	C12	123.9	119.9
C17	C11	C12	119.9	120.2
C11	C17	C16	119.8	119.4
C11	C17	H17	120.1	120.3
C11	C12	C13	121.3	120.6
C11	C12	H12	119.4	119.7
C17	C16	C15	136.3	133.9
C17	C16	C14	118.2	119.8
C16	C17	H17	120.1	120.3
C15	C16	C14	105.5	106.3
C16	C15	N4	125.0	126.2
C16	C15	N3	111.2	107.6
C16	C14	N2	104.5	106.8
C16	C14	C13	124.0	119.7
N4	C15	N3	123.7	126.2
C15	N4	HN4	109.5	120.0
C15	N4	HN4A	109.5	120.0
C15	N3	N2	104.8	110.1
N3	N2	C14	114.0	109.3
N3	N2	HN2	123.0	125.4
N2	C14	C13	131.4	133.5
C14	N2	HN2	123.0	125.4
C14	C13	C12	116.7	120.1
C14	C13	H13	121.6	120.0
C12	C13	H13	121.6	119.9
C13	C12	H12	119.3	119.7
H1	C1	H1A	109.5	109.5
H1	C1	H1B	109.4	109.5
H1A	C1	H1B	109.5	109.5
H4	C4	H4A	109.5	109.5
H4	C4	H4B	109.5	109.4
H4A	C4	H4B	109.5	109.5
H3	C3	H3A	109.4	109.5
H3	C3	H3B	109.5	109.5
H3A	C3	H3B	109.5	109.4
HN4	N4	HN4A	109.5	120.0

Torsion Angles for 5B3

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2	S1	O1	N1	230.6	237.0
O2	S1	O1	C5	123.1	122.9
C6	C5	S1	O1	347.1	326.5
C2	N1	S1	O1	29.3	180.8
N1	S1	O1	C5	252.5	245.9
O1	S1	N1	HN1	269.3	0.8
O1	S1	C5	C10	167.7	146.6
C6	C7	C8	C9	358.1	359.9
C6	C7	C8	C11	182.8	180.0
C8	C7	C6	H7	180.0	180.4
C7	C6	C5	S1	180.2	180.0
C7	C6	C5	C10	359.6	359.9
C5	C6	C7	H6	180.0	180.1
C8	C7	C6	C5	0.8	0.1
C6	C7	C8	H7	180.0	179.6
C8	C7	C6	H6	180.8	180.0
C10	C9	C8	C7	2.6	0.0
C9	C8	C7	C11	175.2	179.9
C7	C8	C9	H9	182.6	180.1
C7	C8	C11	C17	133.4	180.0
C7	C8	C11	C12	316.7	359.6
O1	S1	O2	N1	133.3	123.0
O1	S1	O2	C5	237.1	237.1
C6	C5	S1	O2	217.6	193.6
C2	N1	S1	O2	164.3	313.7
N1	S1	O2	C5	103.8	114.1
O2	S1	N1	HN1	44.2	133.7
O2	S1	C5	C10	38.2	13.8
O1	S1	C5	C6	347.1	326.5
C5	C6	C7	C8	0.8	0.1
C5	C6	C7	H7	180.8	179.7
C7	C6	C5	H6	180.0	179.9
O2	S1	C5	C6	217.6	193.6
N1	S1	C5	C6	107.0	80.1
S1	C5	C6	C10	180.6	180.1
C6	C5	C10	C9	1.0	0.1
C6	C5	C10	H10	181.1	180.0
C1	C2	N1	S1	129.6	66.4
N1	C2	C1	C4	238.9	240.0
N1	C2	C1	C3	120.9	120.0
C1	C2	N1	HN1	249.6	246.4
C4	C2	C1	C3	242.0	240.0
C1	C2	C4	H4	291.9	74.3
C1	C2	C4	H4A	51.9	194.3
C1	C2	C4	H4B	171.9	314.3
C1	C2	C3	H3	232.2	60.0
C1	C2	C3	H3A	352.2	180.0
C1	C2	C3	H3B	112.2	300.0
H1	C1	C2	H1A	240.0	240.0
H1	C1	C2	H1B	120.0	120.0
H1A	C1	C2	H1B	240.0	240.0
O1	S1	N1	C2	29.3	180.8
O2	S1	N1	C2	164.3	313.7
C1	C2	N1	C4	117.0	120.0
C1	C2	N1	C3	239.6	240.0
N1	C2	C1	H1	247.2	53.0
N1	C2	C1	H1A	7.2	173.0
N1	C2	C1	H1B	127.2	293.0
C2	N1	S1	C5	275.8	67.3
S1	N1	C2	HN1	240.0	180.0
C4	C2	N1	C3	122.6	120.0
N1	C2	C4	H4	49.4	194.3
N1	C2	C4	H4A	169.4	314.3
N1	C2	C4	H4B	289.4	74.4
N1	C2	C3	H3	113.5	300.0
N1	C2	C3	H3A	233.5	60.0
N1	C2	C3	H3B	353.5	180.0
O1	S1	N1	O2	225.0	227.1
O1	S1	N1	C5	113.5	113.5
O2	S1	N1	C5	248.5	246.5
C6	C5	S1	N1	107.0	80.1
S1	N1	C2	C4	12.6	306.3
S1	N1	C2	C3	250.0	186.3
C2	N1	S1	HN1	120.0	180.0
N1	S1	C5	C10	287.6	260.2
O1	S1	C5	O2	129.5	132.9
O1	S1	C5	N1	240.0	246.5
O2	S1	C5	N1	110.6	113.6
C6	C5	S1	C10	179.4	179.9
S1	C5	C6	H6	0.2	0.2
C5	S1	N1	HN1	155.7	247.2
S1	C5	C10	C9	180.4	179.9
S1	C5	C10	H10	0.4	359.9
C6	C5	C10	S1	180.6	180.1
C10	C5	C6	H6	179.6	180.0
C5	C10	C9	C8	357.8	360.0
C9	C10	C5	H10	180.0	180.0
C5	C10	C9	H9	177.9	179.9
C1	C2	C4	N1	242.4	240.0
C1	C2	C4	C3	118.7	120.0
C4	C2	C1	H1	8.3	173.1
C4	C2	C1	H1A	128.3	293.1
C4	C2	C1	H1B	248.3	53.1
C4	C2	N1	S1	12.6	306.3
N1	C2	C4	C3	236.3	240.0
C4	C2	N1	HN1	132.6	126.4
C4	C2	C3	H3	348.7	180.0
C4	C2	C3	H3A	108.6	300.0
C4	C2	C3	H3B	228.7	60.0
H4	C4	C2	H4A	240.0	240.0
H4	C4	C2	H4B	120.0	120.0
H4A	C4	C2	H4B	240.0	240.0
C1	C2	C3	N1	118.7	120.0
C1	C2	C3	C4	243.5	240.0
C3	C2	C1	H1	126.3	293.1
C3	C2	C1	H1A	246.3	53.1
C3	C2	C1	H1B	6.3	173.1
C3	C2	N1	S1	250.0	186.3
N1	C2	C3	C4	124.8	120.0
C3	C2	N1	HN1	10.0	6.4
C3	C2	C4	H4	173.1	314.3
C3	C2	C4	H4A	293.1	74.3
C3	C2	C4	H4B	53.1	194.3
H3	C3	C2	H3A	240.1	240.0
H3	C3	C2	H3B	120.0	120.0
H3A	C3	C2	H3B	240.0	240.1
C7	C8	C9	C10	2.6	0.0
C5	C10	C9	H10	180.0	180.0
C10	C9	C8	C11	177.7	180.0
C8	C9	C10	H9	180.0	180.1
C7	C8	C9	C11	184.9	180.1
C9	C8	C7	H7	178.1	180.3
C8	C9	C10	H10	177.8	180.0
C10	C9	C8	H9	180.0	179.9
C9	C8	C11	C17	318.2	0.0
C9	C8	C11	C12	141.6	179.7
C7	C8	C11	C9	175.1	179.9
C11	C8	C7	H7	2.9	0.4
C11	C8	C9	H9	357.7	0.0
C17	C11	C8	C12	176.6	180.4
C8	C11	C17	C16	182.3	179.9
C8	C11	C17	H17	2.3	359.9
C8	C11	C12	C13	177.5	179.8
C8	C11	C12	H12	357.5	0.1
C8	C11	C17	C12	183.2	179.6
C17	C11	C12	C13	1.0	359.4
C17	C11	C12	H12	181.0	179.8
C11	C17	C16	C15	179.8	179.9
C11	C17	C16	C14	359.9	0.0
C16	C17	C11	H17	180.0	180.0
C8	C11	C12	C17	176.5	180.4
C12	C11	C17	C16	359.1	0.3
C12	C11	C17	H17	179.0	180.3
C14	C13	C12	C11	359.9	0.6
C11	C12	C13	H13	179.9	180.3
C13	C12	C11	H12	180.0	179.6
C16	C17	C11	C12	359.1	0.3
C11	C17	C16	H17	180.0	180.0
C15	C16	C17	C14	179.9	179.9
C17	C16	C15	N4	356.1	0.1
C17	C16	C15	N3	180.1	180.0
C17	C16	C14	N2	180.0	180.0
C17	C16	C14	C13	1.2	360.0
C17	C16	C15	C14	180.1	180.1
C15	C16	C17	H17	359.8	359.9
C15	C16	C14	N2	0.0	0.0
C15	C16	C14	C13	181.2	180.0
N4	C15	C16	N3	176.0	180.1
C16	C15	N4	HN4	76.7	359.9
C16	C15	N4	HN4A	196.7	179.9
C16	C15	N3	N2	360.0	0.1
C17	C16	C14	C15	179.9	179.9
C14	C16	C17	H17	179.9	180.0
C14	C16	C15	N4	176.0	180.0
C14	C16	C15	N3	360.0	360.0
N3	N2	C14	C16	359.9	0.0
N2	C14	C16	C13	178.8	180.0
C16	C14	N2	HN2	179.9	180.0
C16	C14	C13	C12	358.9	359.7
C16	C14	C13	H13	178.9	180.0
N4	C15	C16	C14	176.0	180.0
C16	C15	N4	N3	184.5	179.9
N4	C15	N3	N2	183.9	180.0
HN4	N4	C15	HN4A	240.0	180.0
N3	C15	C16	C14	360.0	360.0
C16	C15	N3	N4	176.1	180.1
N3	C15	N4	HN4	252.2	180.0
N3	C15	N4	HN4A	12.2	0.0
C15	N3	N2	C14	0.1	359.9
C15	N3	N2	HN2	180.1	179.9
C16	C14	N2	N3	359.9	0.0
N3	N2	C14	C13	178.6	180.0
C14	N2	N3	HN2	180.0	180.0
C16	C14	N2	C13	181.3	180.0
N3	N2	C14	HN2	180.0	180.0
N2	C14	C13	C12	180.5	179.8
N2	C14	C13	H13	0.5	0.0
C11	C12	C13	C14	359.9	0.6
C16	C14	C13	N2	178.4	180.0
C13	C14	N2	HN2	358.6	360.0
C12	C13	C14	H13	180.0	179.7
C14	C13	C12	H12	179.9	180.2
C11	C12	C13	H12	180.0	180.4
C14	C13	C12	H13	180.0	180.3
C6	C7	H7	C8	180.0	180.4
H7	C7	C6	C5	180.8	179.7
H7	C7	C6	H6	0.8	359.6
H7	C7	C8	C9	178.1	180.3
H7	C7	C8	C11	2.9	0.4
H6	C6	C7	C8	180.8	180.0
C7	C6	H6	C5	180.0	180.1
H6	C6	C7	H7	0.8	359.6
H6	C6	C5	S1	0.2	0.2
H6	C6	C5	C10	179.6	180.0
H1	C1	C2	N1	247.2	53.0
H1	C1	C2	C4	8.3	173.1
H1	C1	C2	C3	126.3	293.1
C2	C1	H1	H1A	120.0	120.0
C2	C1	H1	H1B	240.0	240.1
H1A	C1	H1	H1B	120.0	120.0
H1A	C1	C2	N1	7.2	173.0
H1A	C1	C2	C4	128.3	293.1
H1A	C1	C2	C3	246.3	53.1
C2	C1	H1A	H1	240.0	240.0
C2	C1	H1A	H1B	120.0	119.9
H1	C1	H1A	H1B	240.0	239.9
H1B	C1	C2	N1	127.2	293.0
H1B	C1	C2	C4	248.3	53.1
H1B	C1	C2	C3	6.3	173.1
C2	C1	H1B	H1	120.0	120.0
C2	C1	H1B	H1A	240.0	240.0
H1	C1	H1B	H1A	120.0	120.0
C2	N1	HN1	S1	222.7	180.0
HN1	N1	C2	C4	132.6	126.4
HN1	N1	C2	C3	10.0	6.4
HN1	N1	S1	C5	155.7	247.2
H4	C4	C2	C3	173.1	314.3
C2	C4	H4	H4A	120.0	120.0
C2	C4	H4	H4B	240.0	240.0
H4A	C4	H4	H4B	120.0	120.0
H4A	C4	C2	C3	293.1	74.3
C2	C4	H4A	H4	240.0	240.0
C2	C4	H4A	H4B	120.0	120.0
H4	C4	H4A	H4B	240.0	240.0
H4B	C4	C2	C3	53.1	194.3
C2	C4	H4B	H4	120.0	120.0
C2	C4	H4B	H4A	240.0	240.0
H4	C4	H4B	H4A	120.0	120.0
C2	C3	H3	H3A	120.0	120.0
C2	C3	H3	H3B	240.0	240.0
H3A	C3	H3	H3B	120.0	120.0
C2	C3	H3A	H3	240.0	240.0
C2	C3	H3A	H3B	120.0	119.9
H3	C3	H3A	H3B	240.0	240.0
C2	C3	H3B	H3	120.0	120.0
C2	C3	H3B	H3A	240.0	240.0
H3	C3	H3B	H3A	120.0	120.0
C5	C10	H10	C9	180.0	180.0
H10	C10	C9	C8	177.8	180.0
H10	C10	C9	H9	357.8	359.9
C10	C9	H9	C8	180.0	180.1
H9	C9	C10	H10	357.8	359.9
H9	C9	C8	C11	357.7	0.0
H17	C17	C11	C12	179.0	180.3
C11	C17	H17	C16	180.0	180.0
H17	C17	C16	C15	359.8	359.9
H17	C17	C16	C14	179.9	180.0
HN4	N4	C15	N3	252.2	180.0
C15	N4	HN4	HN4A	120.0	180.0
HN4A	N4	C15	N3	12.2	0.0
C15	N4	HN4A	HN4	240.0	180.0
N3	N2	HN2	C14	180.0	180.0
HN2	N2	C14	C13	358.6	360.0
C14	C13	H13	C12	180.0	179.7
H13	C13	C12	H12	359.9	360.0
C11	C12	H12	C13	180.0	179.6
H12	C12	C13	H13	359.9	360.0