PDB Chemical Component 5B2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5B2

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C7	C6	1.412	1.395
C7	C1	1.419	1.465
C7	C2	1.395	1.409
C6	C5	1.412	1.387
C1	N1	1.343	1.397
C1	N2	1.328	1.307
C5	C4	1.415	1.400
C5	C8	1.475	1.484
C4	C3	1.410	1.363
C3	C2	1.403	1.394
C2	N3	1.373	1.371
N3	N2	1.347	1.398
C8	C13	1.418	1.393
C8	C9	1.412	1.393
C13	C12	1.400	1.380
C12	C11	1.397	1.383
C11	C10	1.395	1.384
C10	C9	1.408	1.380
C6	H6	1.080	1.080
N1	HN1	1.000	0.970
N1	HN1A	1.000	0.969
C4	H4	1.080	1.081
C3	H3	1.080	1.080
N3	HN3	1.000	0.970
C13	H13	1.080	1.081
C12	H12	1.080	1.080
C11	H11	1.080	1.079
C10	H10	1.080	1.080
C9	H9	1.080	1.080

Bond Angles for 5B2

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C6	C7	C1	136.1	133.9
C6	C7	C2	119.1	119.8
C7	C6	C5	119.9	119.4
C7	C6	H6	120.0	120.3
C1	C7	C2	104.9	106.3
C7	C1	N1	124.7	126.2
C7	C1	N2	112.1	107.6
C7	C2	C3	123.4	119.7
C7	C2	N3	104.8	106.8
C6	C5	C4	118.8	120.2
C6	C5	C8	119.2	119.9
C5	C6	H6	120.1	120.3
N1	C1	N2	123.2	126.2
C1	N1	HN1	109.5	119.9
C1	N1	HN1A	109.4	120.0
C1	N2	N3	104.3	110.1
C4	C5	C8	122.0	119.9
C5	C4	C3	122.6	120.7
C5	C4	H4	118.7	119.6
C5	C8	C13	120.6	120.2
C5	C8	C9	121.4	120.1
C4	C3	C2	116.3	120.1
C3	C4	H4	118.7	119.7
C4	C3	H3	121.9	119.9
C3	C2	N3	131.7	133.5
C2	C3	H3	121.9	119.9
C2	N3	N2	113.9	109.2
C2	N3	HN3	123.0	125.4
N2	N3	HN3	123.1	125.4
C13	C8	C9	118.0	119.7
C8	C13	C12	121.6	119.9
C8	C13	H13	119.2	120.0
C8	C9	C10	120.3	119.9
C8	C9	H9	119.9	120.1
C13	C12	C11	119.4	120.1
C12	C13	H13	119.2	120.1
C13	C12	H12	120.3	120.0
C12	C11	C10	120.3	120.2
C11	C12	H12	120.3	119.9
C12	C11	H11	119.9	119.9
C11	C10	C9	120.5	120.1
C10	C11	H11	119.8	119.9
C11	C10	H10	119.7	119.9
C9	C10	H10	119.8	120.0
C10	C9	H9	119.8	120.1
HN1	N1	HN1A	109.5	120.0

Torsion Angles for 5B2

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	C7	C6	C2	180.1	179.6
C6	C7	C1	N1	359.7	0.1
C6	C7	C1	N2	180.4	180.0
C6	C7	C2	C3	0.2	359.4
C6	C7	C2	N3	179.8	180.0
C7	C6	C5	C4	0.4	0.0
C7	C6	C5	C8	180.0	180.0
C5	C6	C7	H6	180.0	180.0
C6	C7	C1	C2	179.9	180.3
C1	C7	C6	C5	179.7	179.9
C1	C7	C6	H6	359.7	359.9
C1	C7	C2	C3	180.2	179.7
C1	C7	C2	N3	359.7	0.2
N1	C1	C7	N2	179.3	180.0
C7	C1	N1	HN1	76.2	0.0
C7	C1	N1	HN1A	196.2	180.0
C7	C1	N2	N3	359.6	0.2
C6	C7	C2	C1	180.0	179.7
C2	C7	C6	C5	359.7	0.3
C2	C7	C6	H6	179.7	180.3
C2	C7	C1	N1	179.8	179.8
C2	C7	C1	N2	0.5	359.7
C4	C3	C2	C7	359.8	0.5
C3	C2	C7	N3	180.5	179.5
C7	C2	C3	H3	179.8	180.3
C7	C2	N3	N2	0.0	359.9
C7	C2	N3	HN3	180.0	180.0
C5	C6	C7	C1	179.7	179.9
C5	C6	C7	C2	359.7	0.3
C7	C6	C5	H6	180.0	180.0
C4	C5	C6	C8	180.4	180.1
C6	C5	C4	C3	359.7	359.9
C6	C5	C4	H4	179.7	180.0
C6	C5	C8	C13	320.0	180.0
C6	C5	C8	C9	139.3	359.8
N1	C1	C7	C2	179.8	179.8
C7	C1	N1	N2	180.7	180.0
N1	C1	N2	N3	180.2	180.2
HN1	N1	C1	HN1A	240.0	180.0
N2	C1	C7	C2	0.5	359.7
C7	C1	N2	N1	179.3	180.0
N2	C1	N1	HN1	255.5	180.0
N2	C1	N1	HN1A	15.5	0.0
C2	N3	N2	C1	0.3	360.0
C1	N2	N3	HN3	180.3	179.9
C6	C5	C4	C8	179.6	179.9
C4	C5	C6	H6	180.4	180.0
C4	C5	C8	C13	139.7	359.9
C4	C5	C8	C9	318.9	179.7
C5	C4	C3	C2	0.2	359.8
C3	C4	C5	H4	180.0	179.9
C5	C4	C3	H3	180.3	180.0
C6	C5	C8	C4	180.4	180.1
C8	C5	C6	H6	360.0	359.9
C8	C5	C4	C3	180.1	180.0
C8	C5	C4	H4	0.1	0.1
C13	C8	C5	C9	180.7	180.2
C5	C8	C13	C12	180.1	180.0
C5	C8	C13	H13	0.1	360.0
C5	C8	C9	C10	180.3	179.7
C5	C8	C9	H9	0.3	360.0
C7	C2	C3	C4	359.8	0.5
C3	C4	C5	C8	180.1	180.0
C5	C4	C3	H4	180.0	180.1
C4	C3	C2	N3	180.4	179.8
C2	C3	C4	H3	180.0	179.8
C7	C2	C3	N3	179.4	180.7
C2	C3	C4	H4	180.2	179.7
C4	C3	C2	H3	180.0	180.2
C3	C2	N3	N2	179.5	180.5
C3	C2	N3	HN3	359.5	0.6
C7	C2	N3	C3	180.5	179.3
C1	N2	N3	C2	0.3	360.0
N3	C2	C3	H3	0.4	359.6
N2	N3	C2	HN3	180.0	179.9
C2	N3	N2	HN3	180.0	180.1
C5	C8	C13	C9	179.3	179.8
C13	C8	C9	C10	359.6	359.4
C13	C8	C9	H9	179.6	179.8
C8	C13	C12	C11	359.1	360.0
C12	C13	C8	H13	180.0	180.0
C8	C13	C12	H12	179.1	180.0
C5	C8	C9	C13	180.7	180.2
C9	C8	C13	C12	0.8	0.3
C9	C8	C13	H13	180.8	180.2
C11	C10	C9	C8	0.1	0.6
C8	C9	C10	H10	180.1	180.3
C10	C9	C8	H9	180.0	179.7
C12	C13	C8	C9	0.8	0.3
C8	C13	C12	H13	180.0	180.0
C13	C12	C11	C10	0.6	360.0
C11	C12	C13	H12	180.0	180.0
C13	C12	C11	H11	180.6	180.0
C11	C12	C13	H13	179.1	180.0
C13	C12	C11	H12	180.0	180.0
C12	C11	C10	C9	359.8	359.7
C10	C11	C12	H11	180.0	180.0
C12	C11	C10	H10	179.8	180.0
C8	C9	C10	C11	0.1	0.6
C10	C11	C12	H12	180.6	180.0
C12	C11	C10	H11	180.0	180.0
C9	C10	C11	H10	180.0	179.7
C11	C10	C9	H9	180.1	180.2
C8	C9	C10	H9	180.0	180.3
C9	C10	C11	H11	179.8	179.7
C11	C10	C9	H10	180.0	180.3
H6	C6	C7	C1	359.7	359.9
H6	C6	C7	C2	179.7	180.3
C7	C6	H6	C5	180.0	180.0
H6	C6	C5	C4	180.4	180.0
H6	C6	C5	C8	360.0	359.9
HN1	N1	C1	N2	255.5	180.0
C1	N1	HN1	HN1A	120.0	180.0
HN1A	N1	C1	N2	15.5	0.0
C1	N1	HN1A	HN1	240.0	180.0
H4	C4	C5	C8	0.1	0.1
C5	C4	H4	C3	180.0	179.9
H4	C4	C3	C2	180.2	179.7
H4	C4	C3	H3	0.3	359.9
C4	C3	H3	C2	180.0	179.8
H3	C3	C4	H4	0.3	359.9
H3	C3	C2	N3	0.4	359.6
C2	N3	HN3	N2	180.0	179.9
H13	C13	C8	C9	180.8	180.2
C8	C13	H13	C12	180.0	180.0
H13	C13	C12	C11	179.1	180.0
H13	C13	C12	H12	359.1	0.0
C13	C12	H12	C11	180.0	180.0
H12	C12	C13	H13	359.1	0.0
H12	C12	C11	C10	180.6	180.0
H12	C12	C11	H11	0.6	0.0
C12	C11	H11	C10	180.0	180.0
H11	C11	C12	H12	0.6	0.0
H11	C11	C10	C9	179.8	179.7
H11	C11	C10	H10	359.8	359.9
C11	C10	H10	C9	180.0	179.7
H10	C10	C11	H11	359.8	359.9
H10	C10	C9	H9	0.1	360.0
C8	C9	H9	C10	180.0	179.7
H9	C9	C10	H10	0.1	360.0