PDB Chemical Component 5AX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5AX

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C4	C3	1.573	1.532
C4	O4	1.420	1.429
C4	C5	1.575	1.531
C4	H4	1.100	1.090
C5	O5	1.456	1.430
C5	C6	1.520	1.530
C5	H5	1.100	1.090
C6	O6	1.435	1.429
C6	H61	1.100	1.090
C6	H62	1.099	1.091
C7	C8	1.529	1.507
C7	O7	1.218	1.213
C7	N2	1.360	1.347
C8	H81	1.100	1.091
C8	H82	1.100	1.090
C8	H83	1.100	1.090
C1	C2	1.536	1.531
C1	O5	1.454	1.430
C1	H11	1.099	1.089
C1	H12	1.100	1.090
C2	C3	1.588	1.532
C2	N2	1.476	1.466
C2	H2	1.100	1.090
C3	O3	1.430	1.429
C3	H3	1.100	1.089
N2	HN2	1.000	0.970
O3	HO3	0.950	0.967
O4	HO4	0.950	0.968
O6	HO6	0.950	0.967

Bond Angles for 5AX

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3	C4	O4	109.1	109.5
C5	C4	C3	108.1	109.2
C3	C4	H4	108.5	109.5
C4	C3	C2	113.9	109.0
C4	C3	O3	107.5	109.5
C4	C3	H3	108.4	109.6
C5	C4	O4	112.0	109.5
O4	C4	H4	110.6	109.5
C4	O4	HO4	109.5	114.0
C5	C4	H4	108.5	109.6
C4	C5	O5	106.7	109.4
C4	C5	C6	121.3	109.5
C4	C5	H5	106.4	109.5
C6	C5	O5	107.1	109.5
O5	C5	H5	107.8	109.5
C5	O5	C1	108.3	114.1
C6	C5	H5	107.0	109.5
C5	C6	O6	106.4	109.5
C5	C6	H61	110.2	109.5
C5	C6	H62	110.2	109.4
O6	C6	H61	110.2	109.5
O6	C6	H62	110.2	109.5
C6	O6	HO6	109.5	114.0
H61	C6	H62	109.5	109.5
C8	C7	O7	120.0	120.0
C8	C7	N2	117.8	120.0
C7	C8	H81	109.5	109.4
C7	C8	H82	109.4	109.5
C7	C8	H83	109.4	109.5
N2	C7	O7	122.3	120.0
C7	N2	C2	122.1	120.0
C7	N2	HN2	119.0	120.0
H81	C8	H82	109.5	109.4
H81	C8	H83	109.5	109.5
H82	C8	H83	109.5	109.5
C2	C1	O5	105.2	109.4
C2	C1	H11	110.5	109.5
C2	C1	H12	110.5	109.5
C1	C2	C3	113.9	109.2
C1	C2	N2	104.1	109.5
C1	C2	H2	107.6	109.5
O5	C1	H11	110.5	109.5
O5	C1	H12	110.5	109.5
H11	C1	H12	109.5	109.5
C3	C2	N2	115.6	109.5
C3	C2	H2	107.0	109.5
C2	C3	O3	108.6	109.5
C2	C3	H3	108.2	109.5
N2	C2	H2	108.3	109.6
C2	N2	HN2	119.0	120.0
O3	C3	H3	110.3	109.6
C3	O3	HO3	109.5	114.0

Torsion Angles for 5AX

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	C4	C3	O4	238.0	240.1
O4	C4	C3	H4	239.5	239.9
C3	C4	O4	HO4	180.0	180.0
C5	C4	C3	H4	117.5	120.0
C3	C4	C5	O5	301.9	302.4
C3	C4	C5	C6	179.2	182.4
C3	C4	C5	H5	56.8	62.3
C1	C2	C3	C4	321.3	303.0
C4	C3	C2	N2	200.7	183.1
C4	C3	C2	H2	80.1	62.9
C2	C3	C4	O3	239.7	240.1
C2	C3	C4	H3	120.5	119.8
O3	C3	C4	H3	240.8	239.7
C4	C3	O3	HO3	180.0	60.0
C5	C4	O4	C3	119.7	119.7
C3	C4	O4	H4	119.2	120.1
O4	C4	C3	C2	161.8	176.9
O4	C4	C3	O3	282.1	296.8
O4	C4	C3	H3	41.3	57.1
C5	C4	O4	H4	238.9	239.8
O4	C4	C5	O5	181.6	182.5
O4	C4	C5	C6	58.9	62.5
O4	C4	C5	H5	296.5	302.4
C3	C4	C5	O4	120.2	119.9
C3	C4	C5	H4	242.5	240.1
C5	C4	C3	C2	39.8	57.0
C5	C4	C3	O3	160.1	176.8
C5	C4	C3	H3	279.3	297.2
O4	C4	C5	H4	122.3	120.2
C5	C4	O4	HO4	299.7	299.7
C6	C5	C4	O5	237.3	240.0
O5	C5	C4	H5	245.1	240.0
C4	C5	O5	C1	79.3	61.2
C6	C5	C4	H5	122.4	120.1
C4	C5	C6	O6	72.5	185.0
C4	C5	C6	H61	192.0	305.0
C4	C5	C6	H62	313.0	65.0
C3	C4	H4	O4	240.4	239.9
C5	C4	H4	C3	242.8	240.3
H4	C4	C3	C2	282.3	297.0
H4	C4	C3	O3	42.6	56.9
H4	C4	C3	H3	161.8	177.2
C5	C4	H4	O4	123.2	120.2
H4	C4	O4	HO4	60.8	59.9
H4	C4	C5	O5	59.3	62.3
H4	C4	C5	C6	296.6	302.3
H4	C4	C5	H5	174.2	182.3
O5	C5	C4	C3	301.9	302.4
O5	C5	C4	O4	181.6	182.5
O5	C5	C4	H4	59.3	62.3
C4	C5	O5	C6	228.8	240.0
C4	C5	O5	H5	114.0	120.0
C6	C5	O5	H5	245.2	239.9
O5	C5	C6	O6	310.0	65.0
O5	C5	C6	H61	69.5	185.1
O5	C5	C6	H62	190.5	305.1
C2	C1	O5	C5	286.0	298.8
C5	O5	C1	H11	166.7	178.9
C5	O5	C1	H12	45.3	58.8
C6	C5	C4	C3	179.2	182.4
C6	C5	C4	O4	58.9	62.5
C6	C5	C4	H4	296.6	302.3
C4	C5	C6	O5	122.5	119.9
C4	C5	C6	H5	237.9	240.0
O5	C5	C6	H5	115.4	120.0
C6	C5	O5	C1	210.5	181.2
O6	C6	C5	H61	240.5	240.0
O6	C6	C5	H62	119.5	120.0
C5	C6	O6	HO6	180.0	179.9
H61	C6	C5	H62	239.0	240.0
H5	C5	C4	C3	56.8	62.3
H5	C5	C4	O4	296.5	302.4
H5	C5	C4	H4	174.2	182.3
C4	C5	H5	O5	245.9	240.1
C4	C5	H5	C6	131.0	120.1
C6	C5	H5	O5	114.9	120.0
H5	C5	O5	C1	325.3	301.2
H5	C5	C6	O6	194.6	305.0
H5	C5	C6	H61	314.1	65.1
H5	C5	C6	H62	75.1	185.0
O6	C6	C5	O5	310.0	65.0
O6	C6	C5	H5	194.6	305.0
C5	C6	O6	H61	119.5	120.0
C5	C6	O6	H62	240.5	240.0
H61	C6	O6	H62	121.0	120.0
H61	C6	C5	O5	69.5	185.1
H61	C6	C5	H5	314.1	65.1
C5	C6	H61	O6	242.8	240.0
C5	C6	H61	H62	121.4	120.0
O6	C6	H61	H62	238.6	240.0
H61	C6	O6	HO6	60.5	59.9
H62	C6	C5	O5	190.5	305.1
H62	C6	C5	H5	75.1	185.0
C5	C6	H62	O6	117.2	120.0
C5	C6	H62	H61	238.6	240.0
O6	C6	H62	H61	121.4	120.1
H62	C6	O6	HO6	299.5	299.9
N2	C7	C8	O7	180.0	180.0
C8	C7	N2	C2	103.8	180.0
C8	C7	N2	HN2	283.8	360.0
H81	C8	C7	H82	240.0	240.1
H81	C8	C7	H83	120.0	120.0
H82	C8	C7	H83	240.0	239.9
C8	C7	O7	N2	180.0	180.0
O7	C7	C8	H81	360.0	0.0
O7	C7	C8	H82	120.0	120.0
O7	C7	C8	H83	240.0	240.0
O7	C7	N2	C2	283.8	0.0
O7	C7	N2	HN2	103.8	180.0
C8	C7	N2	O7	180.0	180.0
N2	C7	C8	H81	180.0	180.0
N2	C7	C8	H82	300.0	300.0
N2	C7	C8	H83	60.0	60.0
C1	C2	N2	C7	152.2	85.0
C3	C2	N2	C7	277.9	204.7
C7	N2	C2	H2	37.9	324.8
C2	N2	C7	HN2	180.0	180.0
H81	C8	C7	O7	360.0	0.0
H81	C8	C7	N2	180.0	180.0
C7	C8	H81	H82	120.0	120.0
C7	C8	H81	H83	240.0	240.0
H82	C8	H81	H83	120.0	120.0
H82	C8	C7	O7	120.0	120.0
H82	C8	C7	N2	300.0	300.0
C7	C8	H82	H81	240.0	240.1
C7	C8	H82	H83	120.0	120.1
H81	C8	H82	H83	240.0	240.0
H83	C8	C7	O7	240.0	240.0
H83	C8	C7	N2	60.0	60.0
C7	C8	H83	H81	120.0	120.0
C7	C8	H83	H82	240.0	240.0
H81	C8	H83	H82	120.0	120.0
C4	C3	C2	C1	321.3	303.0
C5	O5	C1	C2	286.0	298.8
C7	N2	C2	C1	152.2	85.0
O5	C1	C2	H11	240.7	240.0
O5	C1	C2	H12	119.3	119.9
H11	C1	C2	H12	238.6	239.9
C3	C2	C1	N2	233.2	240.1
C3	C2	C1	H2	118.4	119.9
C1	C2	C3	O3	201.6	183.1
C1	C2	C3	H3	81.9	62.9
N2	C2	C1	H2	245.2	239.8
C1	C2	N2	HN2	332.2	265.0
C1	O5	C5	H5	325.3	301.2
C2	C1	O5	H11	119.3	120.0
C2	C1	O5	H12	240.7	240.1
O5	C1	C2	C3	52.2	57.6
O5	C1	C2	N2	179.1	177.5
O5	C1	C2	H2	293.8	297.7
H11	C1	O5	H12	121.4	120.1
C2	C1	H11	O5	244.0	240.1
C2	C1	H11	H12	122.0	120.0
H11	C1	C2	C3	171.6	177.6
H11	C1	C2	N2	298.4	297.5
H11	C1	C2	H2	53.1	57.6
O5	C1	H11	H12	238.0	239.9
C2	C1	H12	O5	116.0	119.9
C2	C1	H12	H11	238.0	239.9
H12	C1	C2	C3	292.9	297.7
H12	C1	C2	N2	59.8	57.6
H12	C1	C2	H2	174.5	177.7
O5	C1	H12	H11	122.0	120.1
C2	C3	C4	O4	161.8	176.9
C2	C3	C4	H4	282.3	297.0
C4	C3	C2	O3	119.7	119.9
C4	C3	C2	H3	239.4	240.1
C7	N2	C2	C3	277.9	204.7
C3	C2	C1	O5	52.2	57.6
C3	C2	C1	H11	171.6	177.6
C3	C2	C1	H12	292.9	297.7
C1	C2	C3	N2	120.6	119.9
C1	C2	C3	H2	241.2	240.1
N2	C2	C3	H2	120.7	120.2
C3	C2	N2	HN2	97.9	24.7
O3	C3	C2	H3	119.7	120.3
C2	C3	O3	HO3	303.7	179.6
C2	N2	C7	O7	283.8	0.0
C7	N2	C2	HN2	180.0	180.0
N2	C2	C1	O5	179.1	177.5
N2	C2	C1	H11	298.4	297.5
N2	C2	C1	H12	59.8	57.6
C1	C2	N2	C3	234.2	240.3
C1	C2	N2	H2	114.3	120.1
C3	C2	N2	H2	240.1	239.8
N2	C2	C3	O3	81.0	63.3
N2	C2	C3	H3	321.3	303.0
H2	C2	C1	O5	293.8	297.7
H2	C2	C1	H11	53.1	57.6
H2	C2	C1	H12	174.5	177.7
C1	C2	H2	C3	122.8	119.7
C1	C2	H2	N2	248.0	239.9
C3	C2	H2	N2	125.2	120.1
H2	C2	C3	O3	320.3	303.1
H2	C2	C3	H3	200.6	182.8
H2	C2	N2	HN2	217.9	144.9
O3	C3	C4	O4	282.1	296.8
O3	C3	C4	H4	42.6	56.9
C4	C3	O3	C2	236.3	240.5
C4	C3	O3	H3	118.0	120.3
O3	C3	C2	N2	81.0	63.3
O3	C3	C2	H2	320.3	303.1
C2	C3	O3	H3	241.6	239.8
H3	C3	C4	O4	41.3	57.1
H3	C3	C4	H4	161.8	177.2
C4	C3	H3	C2	124.0	119.5
C4	C3	H3	O3	242.6	239.7
H3	C3	C2	N2	321.3	303.0
H3	C3	C2	H2	200.6	182.8
C2	C3	H3	O3	118.6	120.2
H3	C3	O3	HO3	62.0	299.8
HN2	N2	C7	O7	103.8	180.0
C7	N2	HN2	C2	180.0	180.0
HN2	N2	C2	H2	217.9	144.9
HO3	O3	C3	H3	62.0	299.8
HO4	O4	C4	H4	60.8	59.9
HO6	O6	C6	H61	60.5	59.9
HO6	O6	C6	H62	299.5	299.9