PDB Chemical Component 5AE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5AE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N4 |
C4 |
1.349 |
1.373 |
| N3 |
C4 |
1.344 |
1.325 |
| N3 |
C2 |
1.352 |
1.336 |
| O2 |
C2 |
1.243 |
1.219 |
| C4 |
N5 |
1.364 |
1.340 |
| C2 |
N1 |
1.355 |
1.350 |
| N5 |
C6 |
1.343 |
1.310 |
| N1 |
C6 |
1.346 |
1.350 |
| N1 |
C1' |
1.473 |
1.465 |
| O4' |
C1' |
1.434 |
1.444 |
| O4' |
C4' |
1.426 |
1.437 |
| C1' |
C2' |
1.530 |
1.549 |
| C4' |
C5' |
1.526 |
1.530 |
| C4' |
C3' |
1.526 |
1.541 |
| C5' |
O5' |
1.435 |
1.429 |
| C2' |
O2' |
1.443 |
1.428 |
| C2' |
C3' |
1.525 |
1.548 |
| C3' |
O3' |
1.428 |
1.430 |
| N4 |
H1 |
1.000 |
0.970 |
| N4 |
H2 |
1.000 |
0.969 |
| C6 |
H3 |
1.080 |
1.080 |
| C1' |
H4 |
1.100 |
1.090 |
| C4' |
H5 |
1.100 |
1.090 |
| C5' |
H6 |
1.100 |
1.090 |
| C5' |
H7 |
1.099 |
1.090 |
| O5' |
H8 |
0.950 |
0.966 |
| C3' |
H9 |
1.100 |
1.090 |
| O3' |
H10 |
0.950 |
0.966 |
| C2' |
H11 |
1.100 |
1.091 |
| O2' |
H12 |
0.950 |
0.967 |
Bond Angles for 5AE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N4 |
C4 |
N5 |
121.2 |
119.8 |
| N3 |
C4 |
N5 |
119.9 |
120.5 |
| N3 |
C2 |
N1 |
120.4 |
119.5 |
| O2 |
C2 |
N1 |
121.5 |
120.2 |
| C4 |
N5 |
C6 |
119.7 |
120.4 |
| C2 |
N1 |
C6 |
119.4 |
119.6 |
| C2 |
N1 |
C1' |
120.1 |
120.2 |
| N5 |
C6 |
N1 |
120.8 |
120.0 |
| N5 |
C6 |
H3 |
119.6 |
119.9 |
| C6 |
N1 |
C1' |
120.5 |
120.2 |
| N1 |
C6 |
H3 |
119.6 |
120.0 |
| N1 |
C1' |
C2' |
112.8 |
110.6 |
| N1 |
C1' |
H4 |
108.7 |
110.5 |
| O4' |
C1' |
C2' |
105.6 |
103.5 |
| O4' |
C1' |
H4 |
109.2 |
110.8 |
| O4' |
C4' |
C5' |
111.0 |
109.9 |
| O4' |
C4' |
C3' |
104.5 |
107.3 |
| O4' |
C4' |
H5 |
109.7 |
109.9 |
| C1' |
C2' |
O2' |
111.9 |
111.0 |
| C1' |
C2' |
C3' |
104.2 |
102.1 |
| C2' |
C1' |
H4 |
108.0 |
110.6 |
| C1' |
C2' |
H11 |
109.1 |
110.9 |
| C5' |
C4' |
C3' |
114.8 |
109.9 |
| C4' |
C5' |
O5' |
110.8 |
109.5 |
| C5' |
C4' |
H5 |
108.4 |
109.8 |
| C4' |
C5' |
H6 |
109.1 |
109.5 |
| C4' |
C5' |
H7 |
109.2 |
109.4 |
| C4' |
C3' |
O3' |
111.8 |
110.5 |
| C3' |
C4' |
H5 |
108.4 |
110.0 |
| C4' |
C3' |
H9 |
108.9 |
110.5 |
| O5' |
C5' |
H6 |
109.2 |
109.5 |
| O5' |
C5' |
H7 |
109.1 |
109.5 |
| C5' |
O5' |
H8 |
109.5 |
114.0 |
| O2' |
C2' |
H11 |
110.4 |
110.8 |
| C2' |
O2' |
H12 |
109.5 |
114.0 |
| C2' |
C3' |
H9 |
109.0 |
110.6 |
| O3' |
C3' |
H9 |
110.3 |
110.4 |
| C3' |
O3' |
H10 |
109.5 |
114.0 |
| H1 |
N4 |
H2 |
120.0 |
120.1 |
| H6 |
C5' |
H7 |
109.5 |
109.5 |
Torsion Angles for 5AE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C4 |
N4 |
N5 |
179.6 |
180.1 |
| N4 |
C4 |
N5 |
C6 |
179.8 |
180.0 |
| N4 |
C4 |
N3 |
N5 |
180.4 |
179.9 |
| C4 |
N3 |
C2 |
N1 |
0.3 |
0.2 |
| N3 |
C4 |
N5 |
C6 |
0.1 |
359.9 |
| O2 |
C2 |
N3 |
N1 |
180.6 |
179.8 |
| N3 |
C2 |
N1 |
C6 |
359.8 |
359.6 |
| N3 |
C2 |
N1 |
C1' |
180.4 |
179.7 |
| N3 |
C2 |
O2 |
N1 |
179.4 |
180.2 |
| O2 |
C2 |
N1 |
C6 |
179.2 |
179.7 |
| O2 |
C2 |
N1 |
C1' |
359.8 |
359.9 |
| C4 |
N5 |
C6 |
N1 |
359.9 |
359.8 |
| C4 |
N5 |
C6 |
H3 |
179.9 |
180.0 |
| N5 |
C6 |
N1 |
C2 |
0.1 |
0.5 |
| C6 |
N1 |
C2 |
C1' |
179.4 |
179.8 |
| C2 |
N1 |
C6 |
H3 |
180.1 |
180.3 |
| C2 |
N1 |
C1' |
C2' |
107.5 |
115.0 |
| C2 |
N1 |
C1' |
H4 |
347.8 |
352.1 |
| C2 |
N1 |
C6 |
N5 |
0.1 |
0.5 |
| N5 |
C6 |
N1 |
C1' |
179.5 |
180.3 |
| N1 |
C6 |
N5 |
H3 |
180.0 |
179.8 |
| C2 |
N1 |
C6 |
C1' |
180.6 |
180.2 |
| N5 |
C6 |
N1 |
H3 |
180.0 |
180.2 |
| C6 |
N1 |
C1' |
C2' |
288.1 |
295.2 |
| C6 |
N1 |
C1' |
H4 |
168.4 |
172.3 |
| C2 |
N1 |
C1' |
C6 |
179.4 |
179.8 |
| C1' |
N1 |
C6 |
H3 |
359.5 |
0.1 |
| O4' |
C1' |
N1 |
C2' |
119.3 |
114.1 |
| O4' |
C1' |
N1 |
H4 |
238.9 |
237.0 |
| N1 |
C1' |
C2' |
O2' |
262.0 |
273.7 |
| N1 |
C1' |
C2' |
C3' |
141.0 |
155.5 |
| C2' |
C1' |
N1 |
H4 |
119.7 |
122.9 |
| N1 |
C1' |
C2' |
H11 |
24.4 |
37.3 |
| N1 |
C1' |
O4' |
C2' |
236.7 |
241.5 |
| N1 |
C1' |
O4' |
H4 |
120.7 |
122.9 |
| O4' |
C1' |
C2' |
O2' |
138.9 |
155.2 |
| O4' |
C1' |
C2' |
C3' |
17.9 |
37.0 |
| C2' |
C1' |
O4' |
H4 |
244.1 |
241.4 |
| O4' |
C1' |
C2' |
H11 |
261.3 |
278.8 |
| C4' |
O4' |
C1' |
C2' |
323.7 |
319.9 |
| C4' |
O4' |
C1' |
H4 |
79.6 |
78.5 |
| C5' |
C4' |
O4' |
C3' |
124.3 |
119.4 |
| O4' |
C4' |
C5' |
O5' |
300.1 |
66.5 |
| C5' |
C4' |
O4' |
H5 |
240.3 |
239.0 |
| O4' |
C4' |
C5' |
H6 |
60.3 |
186.5 |
| O4' |
C4' |
C5' |
H7 |
179.9 |
306.5 |
| O4' |
C4' |
C3' |
O3' |
211.5 |
239.3 |
| C3' |
C4' |
O4' |
H5 |
116.0 |
119.6 |
| O4' |
C4' |
C3' |
H9 |
89.3 |
116.8 |
| N1 |
C1' |
C2' |
H4 |
239.9 |
237.2 |
| O4' |
C1' |
C2' |
H4 |
116.8 |
118.7 |
| O2' |
C2' |
C1' |
H11 |
237.5 |
236.4 |
| C1' |
C2' |
O2' |
H12 |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
H9 |
249.1 |
220.4 |
| O4' |
C4' |
C5' |
C3' |
241.8 |
242.2 |
| O4' |
C4' |
C5' |
H5 |
120.5 |
121.0 |
| C5' |
C4' |
C3' |
O3' |
89.6 |
119.9 |
| C3' |
C4' |
C5' |
H5 |
238.7 |
238.8 |
| C5' |
C4' |
C3' |
H9 |
327.5 |
357.4 |
| O5' |
C5' |
C4' |
H6 |
239.8 |
240.0 |
| O5' |
C5' |
C4' |
H7 |
120.2 |
120.0 |
| C4' |
C5' |
O5' |
H8 |
180.0 |
180.1 |
| H6 |
C5' |
C4' |
H7 |
240.4 |
240.0 |
| O4' |
C4' |
C3' |
C5' |
121.9 |
119.4 |
| O4' |
C4' |
C3' |
H5 |
243.1 |
240.4 |
| C1' |
C2' |
C3' |
C4' |
5.4 |
339.2 |
| C3' |
C4' |
C5' |
O5' |
58.3 |
184.3 |
| C5' |
C4' |
C3' |
H5 |
121.3 |
121.0 |
| C3' |
C4' |
C5' |
H6 |
178.6 |
304.3 |
| C3' |
C4' |
C5' |
H7 |
298.1 |
64.3 |
| C2' |
C3' |
C4' |
H9 |
243.6 |
241.1 |
| O3' |
C3' |
C4' |
H9 |
122.1 |
122.5 |
| C4' |
C3' |
O3' |
H10 |
180.0 |
298.5 |
| O5' |
C5' |
C4' |
C3' |
58.3 |
184.3 |
| O5' |
C5' |
C4' |
H5 |
179.6 |
305.4 |
| C4' |
C5' |
O5' |
H6 |
120.2 |
120.0 |
| C4' |
C5' |
O5' |
H7 |
239.8 |
240.0 |
| H6 |
C5' |
O5' |
H7 |
119.6 |
120.0 |
| C1' |
C2' |
O2' |
C3' |
243.5 |
247.3 |
| O2' |
C2' |
C1' |
H4 |
22.1 |
36.6 |
| C1' |
C2' |
O2' |
H11 |
121.7 |
123.6 |
| O2' |
C2' |
C3' |
H9 |
128.0 |
102.1 |
| C1' |
C2' |
C3' |
O2' |
121.1 |
118.3 |
| C3' |
C2' |
C1' |
H4 |
261.1 |
278.3 |
| C1' |
C2' |
C3' |
H11 |
243.5 |
241.8 |
| C2' |
C3' |
C4' |
H5 |
89.9 |
117.4 |
| C4' |
C3' |
C2' |
H9 |
116.3 |
118.8 |
| O3' |
C3' |
C2' |
H9 |
237.6 |
237.4 |
| C2' |
C3' |
O3' |
H10 |
63.0 |
183.8 |
| C1' |
C2' |
C3' |
O3' |
126.7 |
97.8 |
| O3' |
C3' |
C4' |
H5 |
328.3 |
358.8 |
| C4' |
C3' |
O3' |
H9 |
238.6 |
237.5 |
| C2' |
C3' |
O3' |
H9 |
121.7 |
122.7 |
| H1 |
N4 |
C4 |
N5 |
180.4 |
180.1 |
| H2 |
N4 |
C4 |
N5 |
0.4 |
359.9 |
| N5 |
C6 |
H3 |
N1 |
180.0 |
179.8 |
| H3 |
C6 |
N1 |
C1' |
359.5 |
0.1 |
| N1 |
C1' |
H4 |
C2' |
122.6 |
122.9 |
| O4' |
C1' |
H4 |
C2' |
245.6 |
245.8 |
| H4 |
C1' |
C2' |
O2' |
22.1 |
36.6 |
| H4 |
C1' |
C2' |
C3' |
261.1 |
278.3 |
| H4 |
C1' |
C2' |
H11 |
144.6 |
160.2 |
| O4' |
C4' |
H5 |
C5' |
238.7 |
239.0 |
| O4' |
C4' |
H5 |
C3' |
113.5 |
118.0 |
| C5' |
C4' |
H5 |
C3' |
234.8 |
238.9 |
| H5 |
C4' |
C5' |
O5' |
179.6 |
305.4 |
| H5 |
C4' |
C5' |
H6 |
299.8 |
65.5 |
| H5 |
C4' |
C5' |
H7 |
59.4 |
185.5 |
| H5 |
C4' |
C3' |
O3' |
328.3 |
358.8 |
| H5 |
C4' |
C3' |
H9 |
206.2 |
236.3 |
| H6 |
C5' |
C4' |
C3' |
178.6 |
304.3 |
| C4' |
C5' |
H6 |
O5' |
238.8 |
240.0 |
| H6 |
C5' |
C4' |
H5 |
299.8 |
65.5 |
| C4' |
C5' |
H6 |
H7 |
119.4 |
120.0 |
| O5' |
C5' |
H6 |
H7 |
240.6 |
240.0 |
| H6 |
C5' |
O5' |
H8 |
59.8 |
60.0 |
| H7 |
C5' |
C4' |
C3' |
298.1 |
64.3 |
| C4' |
C5' |
H7 |
O5' |
121.2 |
120.0 |
| H7 |
C5' |
C4' |
H5 |
59.4 |
185.5 |
| C4' |
C5' |
H7 |
H6 |
240.6 |
240.0 |
| O5' |
C5' |
H7 |
H6 |
119.4 |
120.0 |
| H7 |
C5' |
O5' |
H8 |
300.2 |
300.0 |
| H8 |
O5' |
C5' |
H6 |
59.8 |
60.0 |
| H8 |
O5' |
C5' |
H7 |
300.2 |
300.0 |
| C4' |
C3' |
H9 |
O3' |
123.1 |
122.5 |
| H9 |
C3' |
C4' |
H5 |
206.2 |
236.3 |
| H9 |
C3' |
O3' |
H10 |
301.4 |
61.1 |
| H10 |
O3' |
C3' |
H9 |
301.4 |
61.1 |
| C1' |
C2' |
H11 |
O2' |
236.6 |
236.3 |
| C1' |
C2' |
H11 |
C3' |
113.3 |
112.7 |
| H11 |
C2' |
C1' |
H4 |
144.6 |
160.2 |
| H11 |
C2' |
O2' |
H12 |
58.3 |
56.4 |
| H11 |
C2' |
C3' |
H9 |
5.6 |
338.6 |
| H12 |
O2' |
C2' |
H11 |
58.3 |
56.4 |