PDB Chemical Component 5A3
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5A3
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O42 |
PA2 |
1.478 |
1.480 |
| O31 |
PA1 |
1.486 |
1.480 |
| O32 |
PA2 |
1.471 |
1.611 |
| PA2 |
O22 |
1.467 |
1.610 |
| PA2 |
O12 |
1.622 |
1.609 |
| O21 |
PA1 |
1.493 |
1.610 |
| PA1 |
O11 |
1.634 |
1.610 |
| PA1 |
O41 |
1.623 |
1.610 |
| O11 |
C1 |
1.439 |
1.429 |
| O12 |
C2 |
1.445 |
1.430 |
| C2 |
C1 |
1.559 |
1.530 |
| C2 |
C3 |
1.532 |
1.529 |
| C1 |
C6 |
1.533 |
1.530 |
| O46 |
PA6 |
1.484 |
1.479 |
| O33 |
PA3 |
1.457 |
1.480 |
| O43 |
PA3 |
1.474 |
1.610 |
| O13 |
PA3 |
1.604 |
1.610 |
| O13 |
C3 |
1.454 |
1.429 |
| PA3 |
O23 |
1.496 |
1.610 |
| C3 |
C4 |
1.541 |
1.530 |
| C6 |
O16 |
1.459 |
1.429 |
| C6 |
C5 |
1.512 |
1.531 |
| PA6 |
O36 |
1.471 |
1.610 |
| PA6 |
O16 |
1.635 |
1.610 |
| PA6 |
O26 |
1.483 |
1.610 |
| C4 |
C5 |
1.518 |
1.530 |
| C4 |
O14 |
1.427 |
1.429 |
| C5 |
O15 |
1.381 |
1.429 |
| O15 |
PA5 |
1.600 |
1.610 |
| O14 |
PA4 |
1.610 |
1.610 |
| O34 |
PA4 |
1.499 |
1.481 |
| O24 |
PA4 |
1.462 |
1.610 |
| PA4 |
O44 |
1.488 |
1.609 |
| PA5 |
CB5 |
1.903 |
1.823 |
| PA5 |
O25 |
1.642 |
1.480 |
| PA5 |
O35 |
1.596 |
1.610 |
| CB5 |
PB5 |
1.844 |
1.823 |
| O55 |
PB5 |
1.613 |
1.480 |
| PB5 |
O75 |
1.635 |
1.611 |
| PB5 |
O65 |
1.493 |
1.609 |
| C2 |
H1 |
1.100 |
1.090 |
| C1 |
H2 |
1.100 |
1.091 |
| C4 |
H3 |
1.100 |
1.090 |
| C5 |
H4 |
1.100 |
1.090 |
| C6 |
H5 |
1.100 |
1.090 |
| C3 |
H6 |
1.100 |
1.091 |
| O75 |
H7 |
0.950 |
0.967 |
| O65 |
H8 |
0.950 |
0.967 |
| CB5 |
H9 |
1.100 |
1.089 |
| CB5 |
H10 |
1.100 |
1.090 |
| O35 |
H11 |
0.950 |
0.968 |
| O36 |
H12 |
0.950 |
0.967 |
| O26 |
H13 |
0.950 |
0.967 |
| O41 |
H14 |
0.950 |
0.967 |
| O21 |
H15 |
0.950 |
0.968 |
| O22 |
H16 |
0.950 |
0.966 |
| O32 |
H17 |
0.950 |
0.967 |
| O43 |
H18 |
0.950 |
0.968 |
| O23 |
H19 |
0.951 |
0.968 |
| O24 |
H20 |
0.950 |
0.967 |
| O44 |
H21 |
0.950 |
0.967 |
Bond Angles for 5A3
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O42 |
PA2 |
O22 |
115.7 |
109.5 |
| O31 |
PA1 |
O11 |
108.2 |
109.5 |
| O31 |
PA1 |
O41 |
106.3 |
109.5 |
| PA2 |
O22 |
H16 |
109.5 |
114.0 |
| PA1 |
O41 |
H14 |
109.5 |
114.0 |
| O11 |
C1 |
H2 |
110.2 |
109.4 |
| O12 |
C2 |
H1 |
109.2 |
109.4 |
| C1 |
C2 |
C3 |
111.3 |
109.5 |
| C2 |
C1 |
C6 |
113.0 |
109.5 |
| C1 |
C2 |
H1 |
107.8 |
109.5 |
| C2 |
C1 |
H2 |
108.6 |
109.5 |
| C2 |
C3 |
C4 |
111.2 |
109.5 |
| C3 |
C2 |
H1 |
108.1 |
109.5 |
| C2 |
C3 |
H6 |
108.9 |
109.5 |
| C1 |
C6 |
O16 |
109.5 |
109.5 |
| C1 |
C6 |
C5 |
112.4 |
109.5 |
| C6 |
C1 |
H2 |
108.9 |
109.5 |
| C1 |
C6 |
H5 |
108.3 |
109.5 |
| O46 |
PA6 |
O36 |
115.9 |
109.5 |
| O46 |
PA6 |
O26 |
114.5 |
109.5 |
| O33 |
PA3 |
O23 |
115.1 |
109.4 |
| O43 |
PA3 |
O23 |
113.4 |
109.5 |
| O13 |
PA3 |
O23 |
103.2 |
109.5 |
| O13 |
C3 |
H6 |
110.0 |
109.5 |
| PA3 |
O23 |
H19 |
109.5 |
114.0 |
| C3 |
C4 |
O14 |
109.1 |
109.5 |
| C3 |
C4 |
H3 |
109.3 |
109.5 |
| O16 |
C6 |
H5 |
109.3 |
109.5 |
| C6 |
C5 |
O15 |
106.1 |
109.5 |
| C6 |
C5 |
H4 |
109.6 |
109.5 |
| O36 |
PA6 |
O26 |
112.9 |
109.4 |
| PA6 |
O36 |
H12 |
109.5 |
114.0 |
| PA6 |
O26 |
H13 |
109.5 |
114.0 |
| C5 |
C4 |
O14 |
105.3 |
109.4 |
| C4 |
C5 |
O15 |
104.9 |
109.5 |
| C5 |
C4 |
H3 |
109.6 |
109.5 |
| C4 |
C5 |
H4 |
109.5 |
109.5 |
| C4 |
O14 |
PA4 |
125.7 |
123.0 |
| O14 |
C4 |
H3 |
110.9 |
109.5 |
| C5 |
O15 |
PA5 |
119.1 |
123.0 |
| O15 |
C5 |
H4 |
111.6 |
109.5 |
| O14 |
PA4 |
O44 |
100.5 |
109.5 |
| O24 |
PA4 |
O44 |
116.0 |
109.5 |
| PA4 |
O44 |
H21 |
109.5 |
114.0 |
| PA5 |
CB5 |
H9 |
109.3 |
109.5 |
| PA5 |
CB5 |
H10 |
109.3 |
109.4 |
| O25 |
PA5 |
O35 |
108.4 |
109.4 |
| PA5 |
O35 |
H11 |
109.5 |
114.0 |
| O55 |
PB5 |
O65 |
112.0 |
109.5 |
| PB5 |
O75 |
H7 |
109.5 |
114.0 |
| PB5 |
O65 |
H8 |
109.5 |
114.0 |
| H9 |
CB5 |
H10 |
109.5 |
109.5 |
Torsion Angles for 5A3
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O42 |
PA2 |
O22 |
H16 |
0.0 |
300.0 |
| O31 |
PA1 |
O41 |
H14 |
66.5 |
180.0 |
| O32 |
PA2 |
O22 |
H16 |
136.9 |
60.0 |
| PA2 |
O12 |
C2 |
H1 |
350.5 |
0.0 |
| O21 |
PA1 |
O41 |
H14 |
198.5 |
60.0 |
| O31 |
PA1 |
O11 |
O41 |
246.8 |
120.0 |
| PA1 |
O11 |
C1 |
H2 |
359.3 |
0.0 |
| O31 |
PA1 |
O41 |
O11 |
114.5 |
240.0 |
| O31 |
PA1 |
O11 |
C1 |
181.2 |
55.0 |
| O11 |
C1 |
C2 |
H1 |
70.1 |
59.9 |
| C2 |
C1 |
O11 |
H2 |
240.4 |
240.0 |
| O11 |
C1 |
C6 |
O16 |
290.7 |
300.0 |
| C6 |
C1 |
O11 |
H2 |
117.7 |
120.0 |
| O11 |
C1 |
C6 |
H5 |
49.8 |
60.1 |
| C1 |
C2 |
O12 |
H1 |
118.5 |
119.9 |
| O12 |
C2 |
C1 |
H2 |
190.1 |
180.0 |
| C3 |
C2 |
O12 |
H1 |
241.6 |
240.0 |
| O12 |
C2 |
C3 |
H6 |
171.8 |
180.0 |
| O11 |
C1 |
C2 |
H2 |
120.6 |
120.0 |
| O12 |
C2 |
C1 |
H1 |
240.7 |
240.1 |
| C1 |
C2 |
C3 |
C4 |
54.4 |
60.0 |
| C3 |
C2 |
C1 |
H1 |
118.4 |
120.0 |
| C1 |
C2 |
C3 |
H6 |
294.5 |
300.0 |
| C2 |
C1 |
C6 |
O16 |
170.0 |
180.0 |
| C2 |
C1 |
C6 |
C5 |
48.9 |
60.0 |
| C6 |
C1 |
C2 |
H2 |
239.1 |
240.0 |
| C2 |
C1 |
C6 |
H5 |
289.1 |
300.0 |
| O12 |
C2 |
C3 |
H1 |
119.1 |
120.0 |
| C3 |
C2 |
C1 |
C6 |
307.0 |
300.0 |
| C1 |
C2 |
C3 |
H1 |
241.8 |
240.0 |
| C3 |
C2 |
C1 |
H2 |
67.9 |
60.0 |
| O13 |
C3 |
C2 |
H6 |
239.9 |
240.0 |
| C2 |
C3 |
C4 |
O14 |
190.3 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
68.9 |
60.0 |
| O11 |
C1 |
C6 |
H2 |
241.4 |
240.1 |
| C6 |
C1 |
C2 |
C3 |
307.0 |
300.0 |
| C6 |
C1 |
C2 |
H1 |
188.6 |
180.0 |
| C2 |
C1 |
C6 |
H2 |
120.7 |
120.0 |
| O16 |
C6 |
C1 |
H5 |
240.9 |
240.0 |
| C1 |
C6 |
C5 |
O15 |
196.4 |
180.0 |
| C1 |
C6 |
C5 |
H4 |
75.8 |
60.0 |
| O36 |
PA6 |
O46 |
O26 |
134.2 |
120.0 |
| O46 |
PA6 |
O36 |
H12 |
360.0 |
180.0 |
| O46 |
PA6 |
O26 |
H13 |
0.0 |
60.0 |
| O43 |
PA3 |
O33 |
O23 |
223.8 |
240.0 |
| O13 |
PA3 |
O33 |
O23 |
111.2 |
120.0 |
| O33 |
PA3 |
O23 |
H19 |
0.0 |
180.0 |
| O33 |
PA3 |
O43 |
O23 |
136.9 |
120.0 |
| O13 |
PA3 |
O43 |
O23 |
248.7 |
240.0 |
| O43 |
PA3 |
O23 |
H19 |
137.5 |
300.0 |
| O33 |
PA3 |
O13 |
O23 |
240.1 |
240.0 |
| O43 |
PA3 |
O13 |
O23 |
118.6 |
120.0 |
| PA3 |
O13 |
C3 |
H6 |
2.3 |
360.0 |
| O13 |
PA3 |
O23 |
H19 |
249.2 |
60.0 |
| O13 |
C3 |
C2 |
H1 |
292.6 |
300.0 |
| C2 |
C3 |
O13 |
H6 |
119.4 |
120.0 |
| O13 |
C3 |
C4 |
O14 |
70.1 |
60.0 |
| O13 |
C3 |
C4 |
H3 |
308.7 |
300.0 |
| C4 |
C3 |
C2 |
H1 |
172.6 |
180.0 |
| C2 |
C3 |
C4 |
H6 |
240.1 |
240.0 |
| C5 |
C4 |
C3 |
O14 |
116.5 |
120.0 |
| C3 |
C4 |
C5 |
O15 |
166.7 |
180.0 |
| C5 |
C4 |
C3 |
H3 |
237.9 |
240.0 |
| C3 |
C4 |
C5 |
H4 |
286.6 |
300.0 |
| C3 |
C4 |
O14 |
PA4 |
247.7 |
240.0 |
| O14 |
C4 |
C3 |
H3 |
121.5 |
120.1 |
| C1 |
C6 |
O16 |
C5 |
236.8 |
240.0 |
| O16 |
C6 |
C1 |
H2 |
49.3 |
60.0 |
| C1 |
C6 |
O16 |
H5 |
118.5 |
120.0 |
| O16 |
C6 |
C5 |
O15 |
74.9 |
60.0 |
| O16 |
C6 |
C5 |
H4 |
314.3 |
300.0 |
| C1 |
C6 |
C5 |
O16 |
121.5 |
120.0 |
| C5 |
C6 |
C1 |
H2 |
288.3 |
300.0 |
| C1 |
C6 |
C5 |
H5 |
240.3 |
240.0 |
| C6 |
C5 |
C4 |
O14 |
169.3 |
180.0 |
| C4 |
C5 |
C6 |
O15 |
115.5 |
120.0 |
| C6 |
C5 |
C4 |
H3 |
288.7 |
300.0 |
| C4 |
C5 |
C6 |
H4 |
236.1 |
240.0 |
| C6 |
C5 |
O15 |
PA5 |
238.1 |
240.0 |
| O15 |
C5 |
C6 |
H4 |
120.6 |
120.0 |
| O46 |
PA6 |
O36 |
O26 |
225.1 |
240.0 |
| O36 |
PA6 |
O26 |
H13 |
224.4 |
299.9 |
| PA6 |
O16 |
C6 |
H5 |
359.6 |
360.0 |
| O46 |
PA6 |
O26 |
O36 |
135.6 |
120.0 |
| O26 |
PA6 |
O36 |
H12 |
134.9 |
300.0 |
| C2 |
C3 |
C4 |
C5 |
306.8 |
300.0 |
| C1 |
C6 |
C5 |
C4 |
311.9 |
300.0 |
| C3 |
C4 |
C5 |
O14 |
241.2 |
240.0 |
| C3 |
C4 |
C5 |
H3 |
121.9 |
120.0 |
| C6 |
C5 |
C4 |
O15 |
243.9 |
240.0 |
| C6 |
C5 |
C4 |
H4 |
124.0 |
120.0 |
| C5 |
C4 |
O14 |
PA4 |
126.6 |
120.0 |
| O14 |
C4 |
C5 |
H3 |
240.6 |
240.0 |
| C4 |
C5 |
O15 |
PA5 |
116.0 |
120.0 |
| O15 |
C5 |
C4 |
H4 |
240.1 |
240.0 |
| C3 |
C4 |
O14 |
H3 |
239.5 |
240.0 |
| O14 |
C4 |
C5 |
O15 |
285.4 |
300.0 |
| C5 |
C4 |
O14 |
H3 |
118.5 |
120.0 |
| O14 |
C4 |
C5 |
H4 |
45.4 |
60.0 |
| C4 |
O14 |
PA4 |
O44 |
218.8 |
295.0 |
| C6 |
C5 |
O15 |
H4 |
240.7 |
240.0 |
| O15 |
C5 |
C4 |
O14 |
285.4 |
300.0 |
| O15 |
C5 |
C4 |
H3 |
44.8 |
60.0 |
| C4 |
C5 |
O15 |
H4 |
118.5 |
120.0 |
| PA5 |
O15 |
C5 |
H4 |
357.4 |
360.0 |
| O15 |
PA5 |
CB5 |
H9 |
280.7 |
60.0 |
| O15 |
PA5 |
CB5 |
H10 |
40.4 |
300.0 |
| O15 |
PA5 |
O35 |
H11 |
125.0 |
300.0 |
| PA4 |
O14 |
C4 |
H3 |
8.1 |
360.0 |
| O24 |
PA4 |
O14 |
O44 |
239.7 |
240.0 |
| O14 |
PA4 |
O44 |
H21 |
113.8 |
300.0 |
| O34 |
PA4 |
O44 |
H21 |
0.0 |
180.0 |
| O14 |
PA4 |
O24 |
O44 |
109.1 |
120.0 |
| O24 |
PA4 |
O44 |
H21 |
224.9 |
60.0 |
| C5 |
O15 |
PA5 |
CB5 |
128.2 |
175.0 |
| H9 |
CB5 |
PA5 |
H10 |
240.3 |
120.0 |
| C5 |
O15 |
PA5 |
O25 |
4.7 |
55.0 |
| O25 |
PA5 |
CB5 |
H9 |
44.6 |
180.0 |
| O25 |
PA5 |
CB5 |
H10 |
164.3 |
60.0 |
| O25 |
PA5 |
O35 |
H11 |
0.0 |
180.0 |
| C5 |
O15 |
PA5 |
O35 |
242.4 |
295.0 |
| O35 |
PA5 |
CB5 |
H9 |
162.5 |
300.0 |
| O35 |
PA5 |
CB5 |
H10 |
282.2 |
180.0 |
| CB5 |
PB5 |
O75 |
H7 |
248.4 |
60.0 |
| CB5 |
PB5 |
O65 |
H8 |
115.3 |
180.0 |
| O55 |
PB5 |
O75 |
H7 |
0.0 |
180.0 |
| O55 |
PB5 |
O65 |
H8 |
360.0 |
60.0 |
| O65 |
PB5 |
O75 |
H7 |
124.3 |
300.0 |
| C1 |
C2 |
H1 |
C3 |
120.5 |
120.0 |
| H1 |
C2 |
C1 |
C6 |
188.6 |
180.0 |
| H1 |
C2 |
C1 |
H2 |
309.5 |
300.0 |
| H1 |
C2 |
C3 |
C4 |
172.6 |
180.0 |
| H1 |
C2 |
C3 |
H6 |
52.7 |
60.0 |
| H2 |
C1 |
C2 |
C3 |
67.9 |
60.0 |
| C2 |
C1 |
H2 |
C6 |
236.6 |
240.0 |
| H2 |
C1 |
C2 |
H1 |
309.5 |
300.0 |
| H2 |
C1 |
C6 |
O16 |
49.3 |
60.0 |
| H2 |
C1 |
C6 |
C5 |
288.3 |
300.0 |
| H2 |
C1 |
C6 |
H5 |
168.4 |
180.0 |
| C3 |
C4 |
H3 |
O14 |
120.4 |
120.1 |
| C5 |
C4 |
H3 |
O14 |
244.2 |
240.0 |
| H3 |
C4 |
C5 |
O15 |
44.8 |
60.0 |
| H3 |
C4 |
C5 |
H4 |
164.7 |
180.0 |
| H3 |
C4 |
O14 |
PA4 |
8.1 |
360.0 |
| C6 |
C5 |
H4 |
O15 |
117.2 |
120.0 |
| H4 |
C5 |
C4 |
O14 |
45.4 |
60.0 |
| C4 |
C5 |
H4 |
O15 |
244.2 |
240.0 |
| H4 |
C5 |
C4 |
H3 |
164.7 |
180.0 |
| H4 |
C5 |
O15 |
PA5 |
357.4 |
360.0 |
| C1 |
C6 |
H5 |
O16 |
240.8 |
240.0 |
| C1 |
C6 |
H5 |
C5 |
122.3 |
120.0 |
| H5 |
C6 |
C1 |
H2 |
168.4 |
180.0 |
| H5 |
C6 |
C5 |
O15 |
316.1 |
300.0 |
| H5 |
C6 |
C5 |
H4 |
195.5 |
180.0 |
| C2 |
C3 |
H6 |
C4 |
121.3 |
120.0 |
| H6 |
C3 |
C2 |
H1 |
52.7 |
60.0 |
| H6 |
C3 |
C4 |
O14 |
310.2 |
300.1 |
| H6 |
C3 |
C4 |
H3 |
188.8 |
180.0 |
| PA5 |
CB5 |
H9 |
H10 |
119.6 |
240.0 |
| PA5 |
CB5 |
H10 |
H9 |
240.4 |
120.0 |
| H12 |
O36 |
PA6 |
O26 |
134.9 |
300.0 |
| H18 |
O43 |
PA3 |
O23 |
223.1 |
300.0 |
| H20 |
O24 |
PA4 |
O44 |
135.6 |
60.0 |