PDB Chemical Component 59R
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 59R
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.517 |
1.530 |
| C1 |
O1 |
1.425 |
1.429 |
| C1 |
H1 |
1.101 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| O1 |
C3' |
1.429 |
1.429 |
| N2 |
C2 |
1.449 |
1.470 |
| C2 |
H2 |
1.100 |
1.090 |
| C2 |
H2A |
1.099 |
1.090 |
| C3 |
N2 |
1.442 |
1.468 |
| N2 |
HN2 |
1.000 |
1.009 |
| C3 |
C4 |
1.524 |
1.529 |
| C3 |
H3 |
1.101 |
1.091 |
| C3 |
H3A |
1.100 |
1.090 |
| C11 |
C4 |
1.516 |
1.507 |
| C4 |
H4 |
1.100 |
1.090 |
| C4 |
H4A |
1.100 |
1.090 |
| C2' |
N1' |
1.452 |
1.486 |
| C5' |
N1' |
1.460 |
1.485 |
| N1' |
HN1' |
1.000 |
1.009 |
| C12 |
C11 |
1.391 |
1.382 |
| C11 |
C16 |
1.407 |
1.382 |
| C13 |
C12 |
1.381 |
1.384 |
| C12 |
H12 |
1.080 |
1.080 |
| F13 |
C13 |
1.345 |
1.352 |
| C13 |
C14 |
1.394 |
1.385 |
| C14 |
C15 |
1.393 |
1.382 |
| C14 |
H14 |
1.080 |
1.080 |
| C15 |
C16 |
1.390 |
1.383 |
| C15 |
H15 |
1.080 |
1.080 |
| C16 |
H16 |
1.080 |
1.080 |
| C2A |
N1A |
1.370 |
1.319 |
| N1A |
C6A |
1.365 |
1.324 |
| C3' |
C2' |
1.528 |
1.544 |
| C2' |
H2' |
1.100 |
1.090 |
| C2' |
H2'A |
1.101 |
1.090 |
| C7A |
C2A |
1.521 |
1.507 |
| C2A |
C3A |
1.398 |
1.381 |
| C3' |
C4' |
1.529 |
1.542 |
| C3' |
H3' |
1.100 |
1.090 |
| C3A |
C4A |
1.393 |
1.388 |
| C3A |
H3AA |
1.080 |
1.080 |
| C7A |
C4' |
1.542 |
1.530 |
| C4' |
C5' |
1.537 |
1.544 |
| C4' |
H4' |
1.100 |
1.090 |
| C4A |
C5A |
1.398 |
1.384 |
| C4A |
H4AA |
1.080 |
1.080 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
| C6A |
C5A |
1.396 |
1.391 |
| C5A |
H5A |
1.080 |
1.080 |
| C6A |
N6A |
1.361 |
1.390 |
| N6A |
HN6A |
1.000 |
0.970 |
| N6A |
HN6B |
1.000 |
0.970 |
| C7A |
H7A |
1.100 |
1.090 |
| C7A |
H7AA |
1.100 |
1.090 |
Bond Angles for 59R
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C1 |
C2 |
110.2 |
109.5 |
| C2 |
C1 |
H1 |
109.2 |
109.4 |
| C2 |
C1 |
H1A |
109.2 |
109.5 |
| C1 |
C2 |
H2 |
108.1 |
109.5 |
| C1 |
C2 |
H2A |
108.1 |
109.5 |
| O1 |
C1 |
H1 |
109.2 |
109.5 |
| O1 |
C1 |
H1A |
109.2 |
109.5 |
| C1 |
O1 |
C3' |
113.8 |
114.0 |
| H1 |
C1 |
H1A |
109.7 |
109.5 |
| O1 |
C3' |
C2' |
109.4 |
110.3 |
| O1 |
C3' |
C4' |
107.6 |
110.3 |
| O1 |
C3' |
H3' |
109.4 |
110.3 |
| N2 |
C2 |
H2 |
108.0 |
109.5 |
| N2 |
C2 |
H2A |
108.0 |
109.5 |
| H2 |
C2 |
H2A |
110.9 |
109.4 |
| C3 |
N2 |
HN2 |
107.0 |
111.0 |
| C4 |
C3 |
H3 |
108.5 |
109.4 |
| C4 |
C3 |
H3A |
108.5 |
109.5 |
| C3 |
C4 |
H4 |
110.2 |
109.5 |
| C3 |
C4 |
H4A |
110.2 |
109.5 |
| H3 |
C3 |
H3A |
110.4 |
109.4 |
| C11 |
C4 |
H4 |
110.2 |
109.5 |
| C11 |
C4 |
H4A |
110.2 |
109.5 |
| H4 |
C4 |
H4A |
108.7 |
109.4 |
| C2' |
N1' |
HN1' |
108.4 |
111.0 |
| C5' |
N1' |
HN1' |
108.4 |
111.0 |
| C12 |
C11 |
C16 |
120.3 |
120.0 |
| C11 |
C16 |
C15 |
120.3 |
120.0 |
| C11 |
C16 |
H16 |
119.8 |
120.0 |
| C13 |
C12 |
H12 |
120.4 |
120.0 |
| F13 |
C13 |
C14 |
120.9 |
120.0 |
| C13 |
C14 |
C15 |
120.9 |
119.9 |
| C13 |
C14 |
H14 |
119.5 |
120.0 |
| C15 |
C14 |
H14 |
119.5 |
120.0 |
| C14 |
C15 |
C16 |
118.7 |
120.0 |
| C14 |
C15 |
H15 |
120.7 |
120.0 |
| C16 |
C15 |
H15 |
120.7 |
120.0 |
| C15 |
C16 |
H16 |
119.9 |
120.0 |
| C2A |
N1A |
C6A |
122.1 |
121.7 |
| N1A |
C6A |
C5A |
119.0 |
120.6 |
| N1A |
C6A |
N6A |
121.6 |
119.7 |
| C3' |
C2' |
H2' |
111.8 |
110.4 |
| C3' |
C2' |
H2'A |
111.8 |
110.5 |
| H2' |
C2' |
H2'A |
107.1 |
110.4 |
| C2A |
C3A |
C4A |
118.6 |
119.3 |
| C2A |
C3A |
H3AA |
120.7 |
120.4 |
| C4' |
C3' |
H3' |
113.5 |
110.4 |
| C3' |
C4' |
C5' |
104.4 |
105.1 |
| C3' |
C4' |
H4' |
112.1 |
110.3 |
| C4A |
C3A |
H3AA |
120.7 |
120.3 |
| C3A |
C4A |
C5A |
120.4 |
118.5 |
| C3A |
C4A |
H4AA |
119.8 |
120.8 |
| C7A |
C4' |
H4' |
101.8 |
110.3 |
| C5' |
C4' |
H4' |
111.2 |
110.3 |
| C4' |
C5' |
H5' |
111.0 |
110.4 |
| C4' |
C5' |
H5'A |
111.0 |
110.4 |
| C5A |
C4A |
H4AA |
119.8 |
120.7 |
| C4A |
C5A |
H5A |
120.1 |
120.4 |
| H5' |
C5' |
H5'A |
107.9 |
110.5 |
| C6A |
C5A |
H5A |
120.1 |
120.5 |
| C6A |
N6A |
HN6A |
109.5 |
120.0 |
| C6A |
N6A |
HN6B |
109.4 |
120.0 |
| HN6A |
N6A |
HN6B |
109.5 |
120.0 |
| H7A |
C7A |
H7AA |
110.3 |
109.4 |
Torsion Angles for 59R
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C1 |
C2 |
H1 |
240.0 |
120.0 |
| O1 |
C1 |
C2 |
H1A |
120.0 |
239.9 |
| C2 |
C1 |
O1 |
C3' |
236.2 |
180.0 |
| H1 |
C1 |
C2 |
H1A |
240.0 |
120.0 |
| N2 |
C2 |
C1 |
H2 |
240.0 |
240.0 |
| N2 |
C2 |
C1 |
H2A |
120.0 |
120.0 |
| H2 |
C2 |
C1 |
H2A |
240.0 |
240.1 |
| C2 |
C1 |
O1 |
H1 |
120.0 |
240.1 |
| C2 |
C1 |
O1 |
H1A |
240.0 |
120.1 |
| O1 |
C1 |
C2 |
H2 |
57.5 |
185.0 |
| O1 |
C1 |
C2 |
H2A |
177.5 |
304.9 |
| H1 |
C1 |
O1 |
H1A |
120.0 |
240.0 |
| C1 |
O1 |
C3' |
C2' |
93.2 |
91.5 |
| C1 |
O1 |
C3' |
C4' |
206.9 |
207.1 |
| C1 |
O1 |
C3' |
H3' |
330.5 |
329.4 |
| O1 |
C1 |
H1 |
C2 |
120.6 |
240.0 |
| C2 |
C1 |
H1 |
H1A |
119.7 |
240.0 |
| H1 |
C1 |
C2 |
H2 |
177.5 |
65.0 |
| H1 |
C1 |
C2 |
H2A |
297.6 |
185.0 |
| O1 |
C1 |
H1 |
H1A |
240.3 |
120.0 |
| H1 |
C1 |
O1 |
C3' |
116.2 |
299.9 |
| O1 |
C1 |
H1A |
C2 |
239.4 |
120.1 |
| C2 |
C1 |
H1A |
H1 |
240.3 |
120.0 |
| H1A |
C1 |
C2 |
H2 |
297.5 |
305.1 |
| H1A |
C1 |
C2 |
H2A |
57.6 |
65.0 |
| O1 |
C1 |
H1A |
H1 |
119.7 |
240.0 |
| H1A |
C1 |
O1 |
C3' |
356.2 |
59.9 |
| C3' |
O1 |
C1 |
C2 |
236.2 |
180.0 |
| C3' |
O1 |
C1 |
H1 |
116.2 |
299.9 |
| C3' |
O1 |
C1 |
H1A |
356.2 |
59.9 |
| O1 |
C3' |
C2' |
H2' |
324.0 |
24.0 |
| O1 |
C3' |
C2' |
H2'A |
204.0 |
261.5 |
| C4' |
C3' |
O1 |
H3' |
236.3 |
237.8 |
| O1 |
C3' |
C4' |
C5' |
272.4 |
241.1 |
| O1 |
C3' |
C4' |
H4' |
151.9 |
122.2 |
| N2 |
C2 |
C1 |
H1 |
57.6 |
305.0 |
| N2 |
C2 |
C1 |
H1A |
177.6 |
185.0 |
| C1 |
C2 |
N2 |
H2 |
120.0 |
120.0 |
| C1 |
C2 |
N2 |
H2A |
240.0 |
240.0 |
| H2 |
C2 |
N2 |
H2A |
120.0 |
120.0 |
| H2 |
C2 |
C1 |
H1 |
177.5 |
65.0 |
| H2 |
C2 |
C1 |
H1A |
297.5 |
305.1 |
| C1 |
C2 |
H2 |
H2A |
118.3 |
120.0 |
| N2 |
C2 |
H2 |
H2A |
241.8 |
240.0 |
| H2A |
C2 |
C1 |
H1 |
297.6 |
185.0 |
| H2A |
C2 |
C1 |
H1A |
57.6 |
65.0 |
| C1 |
C2 |
H2A |
H2 |
241.7 |
240.0 |
| N2 |
C2 |
H2A |
H2 |
118.2 |
120.0 |
| C3 |
N2 |
C2 |
H2 |
83.3 |
60.0 |
| C3 |
N2 |
C2 |
H2A |
323.3 |
300.0 |
| HN2 |
N2 |
C2 |
H2 |
203.3 |
183.9 |
| HN2 |
N2 |
C2 |
H2A |
83.3 |
64.0 |
| C4 |
C3 |
N2 |
HN2 |
81.1 |
56.1 |
| H3 |
C3 |
C4 |
H3A |
120.0 |
119.9 |
| C11 |
C4 |
C3 |
H4 |
240.0 |
240.0 |
| C11 |
C4 |
C3 |
H4A |
120.0 |
120.0 |
| H4 |
C4 |
C3 |
H4A |
240.0 |
240.0 |
| H3 |
C3 |
N2 |
HN2 |
201.1 |
176.1 |
| C4 |
C3 |
H3 |
H3A |
241.2 |
240.0 |
| H3 |
C3 |
C4 |
H4 |
193.0 |
180.0 |
| H3 |
C3 |
C4 |
H4A |
313.0 |
300.0 |
| H3A |
C3 |
N2 |
HN2 |
321.1 |
296.0 |
| C4 |
C3 |
H3A |
H3 |
118.8 |
119.9 |
| H3A |
C3 |
C4 |
H4 |
73.0 |
60.1 |
| H3A |
C3 |
C4 |
H4A |
193.0 |
180.0 |
| C11 |
C4 |
C3 |
H3 |
73.0 |
60.0 |
| C11 |
C4 |
C3 |
H3A |
313.0 |
300.1 |
| C3 |
C4 |
C11 |
H4 |
120.0 |
120.0 |
| C3 |
C4 |
C11 |
H4A |
240.0 |
240.0 |
| H4 |
C4 |
C11 |
H4A |
120.0 |
119.9 |
| H4 |
C4 |
C3 |
H3 |
193.0 |
180.0 |
| H4 |
C4 |
C3 |
H3A |
73.0 |
60.1 |
| C3 |
C4 |
H4 |
H4A |
120.9 |
120.0 |
| C11 |
C4 |
H4 |
H4A |
239.1 |
240.1 |
| H4A |
C4 |
C3 |
H3 |
313.0 |
300.0 |
| H4A |
C4 |
C3 |
H3A |
193.0 |
180.0 |
| C3 |
C4 |
H4A |
H4 |
239.1 |
240.0 |
| C11 |
C4 |
H4A |
H4 |
120.9 |
119.9 |
| O1 |
C3' |
C2' |
N1' |
84.0 |
142.8 |
| C5' |
N1' |
C2' |
HN1' |
240.0 |
240.4 |
| C2' |
N1' |
C5' |
HN1' |
120.0 |
119.6 |
| C12 |
C11 |
C4 |
H4 |
339.7 |
150.2 |
| C12 |
C11 |
C4 |
H4A |
219.7 |
30.3 |
| C12 |
C11 |
C16 |
C15 |
1.3 |
359.5 |
| C12 |
C11 |
C16 |
H16 |
181.3 |
179.8 |
| C16 |
C11 |
C4 |
H4 |
160.4 |
330.0 |
| C16 |
C11 |
C4 |
H4A |
40.5 |
210.0 |
| C14 |
C15 |
C16 |
C11 |
358.6 |
0.5 |
| C11 |
C16 |
C15 |
H15 |
178.6 |
180.2 |
| C15 |
C16 |
C11 |
H16 |
180.0 |
179.7 |
| C13 |
C12 |
C11 |
C16 |
0.0 |
0.2 |
| H12 |
C12 |
C11 |
C16 |
180.0 |
180.2 |
| F13 |
C13 |
C12 |
H12 |
359.8 |
0.0 |
| F13 |
C13 |
C14 |
C15 |
180.1 |
180.0 |
| F13 |
C13 |
C14 |
H14 |
0.0 |
360.0 |
| C14 |
C13 |
C12 |
H12 |
178.7 |
180.0 |
| C15 |
C14 |
C13 |
H14 |
180.0 |
180.0 |
| C13 |
C14 |
C15 |
C16 |
0.2 |
359.7 |
| C13 |
C14 |
C15 |
H15 |
180.2 |
180.0 |
| C11 |
C16 |
C15 |
C14 |
358.6 |
0.5 |
| C13 |
C14 |
C15 |
H14 |
180.0 |
180.0 |
| C16 |
C15 |
C14 |
H15 |
180.0 |
179.7 |
| C14 |
C15 |
C16 |
H16 |
178.6 |
180.3 |
| C13 |
C14 |
H14 |
C15 |
180.0 |
180.0 |
| H14 |
C14 |
C15 |
C16 |
180.2 |
179.7 |
| H14 |
C14 |
C15 |
H15 |
0.2 |
0.0 |
| C11 |
C16 |
C15 |
H16 |
180.0 |
180.3 |
| C16 |
C15 |
C14 |
H14 |
180.2 |
179.7 |
| C14 |
C15 |
C16 |
H15 |
180.0 |
180.3 |
| H15 |
C15 |
C14 |
H14 |
0.2 |
0.0 |
| C14 |
C15 |
H15 |
C16 |
180.0 |
179.7 |
| H15 |
C15 |
C16 |
H16 |
358.6 |
359.9 |
| C11 |
C16 |
H16 |
C15 |
180.0 |
179.7 |
| H16 |
C16 |
C15 |
H15 |
358.6 |
359.9 |
| C2A |
N1A |
C6A |
C5A |
359.5 |
359.9 |
| C2A |
N1A |
C6A |
N6A |
180.2 |
179.9 |
| N1A |
C6A |
C5A |
H5A |
180.2 |
180.0 |
| N1A |
C6A |
N6A |
HN6A |
0.0 |
0.0 |
| N1A |
C6A |
N6A |
HN6B |
120.0 |
180.0 |
| O1 |
C3' |
C2' |
C4' |
115.2 |
118.9 |
| O1 |
C3' |
C2' |
H3' |
238.7 |
237.9 |
| C3' |
C2' |
N1' |
HN1' |
142.7 |
80.1 |
| H2' |
C2' |
C3' |
H2'A |
120.0 |
122.4 |
| H2' |
C2' |
N1' |
HN1' |
262.7 |
198.9 |
| C3' |
C2' |
H2' |
H2'A |
237.3 |
237.5 |
| H2'A |
C2' |
N1' |
HN1' |
22.7 |
321.2 |
| C3' |
C2' |
H2'A |
H2' |
122.7 |
122.4 |
| C7A |
C2A |
C3A |
H3AA |
359.3 |
0.1 |
| C3A |
C2A |
N1A |
C6A |
0.8 |
0.1 |
| C4A |
C3A |
C2A |
H3AA |
180.0 |
179.9 |
| C2A |
C3A |
C4A |
C5A |
0.6 |
0.1 |
| C2A |
C3A |
C4A |
H4AA |
180.6 |
180.0 |
| O1 |
C3' |
C4' |
C2' |
243.5 |
241.1 |
| O1 |
C3' |
C4' |
H3' |
121.2 |
122.1 |
| C4' |
C3' |
C2' |
H2' |
208.7 |
265.1 |
| C4' |
C3' |
C2' |
H2'A |
88.7 |
142.6 |
| C7A |
C4' |
C3' |
H4' |
245.5 |
237.8 |
| C5' |
C4' |
C3' |
H4' |
120.5 |
118.9 |
| C3' |
C4' |
C5' |
H5' |
224.8 |
217.4 |
| C3' |
C4' |
C5' |
H5'A |
104.8 |
94.9 |
| O1 |
C3' |
H3' |
C2' |
121.3 |
122.1 |
| O1 |
C3' |
H3' |
C4' |
239.9 |
237.8 |
| H3' |
C3' |
C2' |
H2' |
85.3 |
146.0 |
| H3' |
C3' |
C2' |
H2'A |
325.3 |
23.6 |
| H3' |
C3' |
C4' |
C5' |
151.2 |
119.0 |
| H3' |
C3' |
C4' |
H4' |
30.7 |
0.1 |
| C2A |
C3A |
C4A |
H3AA |
180.0 |
180.1 |
| C5A |
C4A |
C3A |
H4AA |
180.0 |
180.1 |
| C3A |
C4A |
C5A |
H5A |
179.7 |
180.0 |
| C2A |
C3A |
H3AA |
C4A |
180.0 |
179.9 |
| H3AA |
C3A |
C4A |
C5A |
180.5 |
180.0 |
| H3AA |
C3A |
C4A |
H4AA |
0.5 |
359.9 |
| C7A |
C4' |
C3' |
H3' |
276.2 |
237.9 |
| C3' |
C4' |
C7A |
H4' |
120.6 |
122.2 |
| C5' |
C4' |
C7A |
H4' |
240.1 |
237.8 |
| C7A |
C4' |
C5' |
H5' |
100.3 |
98.4 |
| C7A |
C4' |
C5' |
H5'A |
340.3 |
336.0 |
| C4' |
C5' |
N1' |
HN1' |
235.2 |
279.9 |
| C5' |
C4' |
C3' |
H3' |
151.2 |
119.0 |
| C3' |
C4' |
C5' |
H4' |
239.0 |
241.1 |
| C7A |
C4' |
C5' |
H4' |
114.5 |
122.1 |
| H5' |
C5' |
C4' |
H5'A |
120.0 |
122.4 |
| H4' |
C4' |
C3' |
H3' |
30.7 |
0.1 |
| C3' |
C4' |
H4' |
C5' |
116.4 |
115.7 |
| H4' |
C4' |
C5' |
H5' |
345.8 |
336.3 |
| H4' |
C4' |
C5' |
H5'A |
225.8 |
213.9 |
| N1A |
C6A |
C5A |
C4A |
0.2 |
0.1 |
| C5A |
C4A |
C3A |
H3AA |
180.5 |
180.0 |
| C3A |
C4A |
C5A |
H4AA |
180.0 |
179.9 |
| C6A |
C5A |
C4A |
H5A |
180.0 |
180.0 |
| H4AA |
C4A |
C3A |
H3AA |
0.5 |
359.9 |
| C3A |
C4A |
H4AA |
C5A |
180.0 |
180.1 |
| H4AA |
C4A |
C5A |
H5A |
359.7 |
0.1 |
| H5' |
C5' |
N1' |
HN1' |
355.2 |
38.7 |
| H5' |
C5' |
C4' |
H4' |
345.8 |
336.3 |
| C4' |
C5' |
H5' |
H5'A |
238.2 |
237.6 |
| H5'A |
C5' |
N1' |
HN1' |
115.2 |
161.2 |
| H5'A |
C5' |
C4' |
H4' |
225.8 |
213.9 |
| C4' |
C5' |
H5'A |
H5' |
121.8 |
122.4 |
| N1A |
C6A |
C5A |
N6A |
180.6 |
180.0 |
| C6A |
C5A |
C4A |
H4AA |
179.7 |
180.0 |
| C4A |
C5A |
C6A |
H5A |
180.0 |
180.0 |
| H5A |
C5A |
C4A |
H4AA |
359.7 |
0.1 |
| N1A |
C6A |
N6A |
C5A |
179.4 |
180.0 |
| N6A |
C6A |
C5A |
H5A |
359.6 |
0.0 |
| HN6A |
N6A |
C6A |
HN6B |
240.0 |
180.1 |
| C6A |
N6A |
HN6A |
HN6B |
120.0 |
179.9 |
| C6A |
N6A |
HN6B |
HN6A |
240.0 |
180.1 |
| H7A |
C7A |
C4' |
H4' |
306.4 |
292.8 |
| H7AA |
C7A |
C4' |
H4' |
186.4 |
172.8 |