PDB Chemical Component 593
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 593
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C1 |
1.455 |
1.464 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.091 |
| C4 |
N1 |
1.360 |
1.373 |
| N1 |
C2 |
1.368 |
1.350 |
| C2 |
O1 |
1.220 |
1.212 |
| C3 |
C2 |
1.544 |
1.516 |
| N2 |
C4 |
1.299 |
1.297 |
| N2 |
C3 |
1.502 |
1.471 |
| C11 |
C3 |
1.591 |
1.531 |
| C3 |
C5 |
1.542 |
1.507 |
| N3 |
C4 |
1.366 |
1.375 |
| N3 |
HN3 |
1.000 |
0.969 |
| N3 |
HN3A |
1.000 |
0.970 |
| C6 |
C5 |
1.404 |
1.382 |
| C5 |
C10 |
1.409 |
1.381 |
| C6 |
C7 |
1.398 |
1.383 |
| C6 |
H6 |
1.080 |
1.080 |
| C7 |
C8 |
1.392 |
1.381 |
| C7 |
H7 |
1.080 |
1.080 |
| C8 |
C9 |
1.389 |
1.383 |
| C8 |
H8 |
1.080 |
1.080 |
| C10 |
C9 |
1.399 |
1.383 |
| C9 |
H9 |
1.080 |
1.079 |
| C10 |
H10 |
1.080 |
1.080 |
| C20 |
C11 |
1.559 |
1.530 |
| C16 |
C11 |
1.564 |
1.530 |
| C11 |
C12 |
1.566 |
1.530 |
| C13 |
C12 |
1.540 |
1.531 |
| C12 |
H12 |
1.100 |
1.089 |
| C12 |
H12A |
1.100 |
1.090 |
| C19 |
C13 |
1.535 |
1.530 |
| C14 |
C13 |
1.535 |
1.530 |
| C13 |
H13 |
1.100 |
1.090 |
| C15 |
C14 |
1.536 |
1.530 |
| C14 |
H14 |
1.100 |
1.090 |
| C14 |
H14A |
1.100 |
1.090 |
| C17 |
C15 |
1.535 |
1.531 |
| C15 |
C16 |
1.538 |
1.530 |
| C15 |
H15 |
1.100 |
1.090 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.090 |
| C17 |
C18 |
1.534 |
1.529 |
| C17 |
H17 |
1.101 |
1.090 |
| C17 |
H17A |
1.100 |
1.090 |
| C18 |
C20 |
1.540 |
1.530 |
| C18 |
C19 |
1.535 |
1.530 |
| C18 |
H18 |
1.100 |
1.090 |
| C19 |
H19 |
1.100 |
1.090 |
| C19 |
H19A |
1.100 |
1.090 |
| C20 |
H20 |
1.100 |
1.090 |
| C20 |
H20A |
1.100 |
1.090 |
Bond Angles for 593
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C1 |
H1 |
109.5 |
109.5 |
| N1 |
C1 |
H1A |
109.5 |
109.5 |
| N1 |
C1 |
H1B |
109.4 |
109.5 |
| H1 |
C1 |
H1A |
109.4 |
109.4 |
| H1 |
C1 |
H1B |
109.4 |
109.5 |
| H1A |
C1 |
H1B |
109.5 |
109.4 |
| N1 |
C2 |
O1 |
126.5 |
127.5 |
| C3 |
N2 |
C4 |
108.3 |
107.6 |
| N2 |
C4 |
N3 |
123.5 |
123.6 |
| N2 |
C3 |
C5 |
109.2 |
110.6 |
| C3 |
C5 |
C10 |
121.3 |
120.0 |
| C4 |
N3 |
HN3 |
120.0 |
120.0 |
| C4 |
N3 |
HN3A |
120.0 |
120.0 |
| HN3 |
N3 |
HN3A |
120.0 |
120.1 |
| C6 |
C5 |
C10 |
117.0 |
120.0 |
| C5 |
C10 |
C9 |
121.6 |
120.0 |
| C5 |
C10 |
H10 |
119.2 |
120.1 |
| C7 |
C6 |
H6 |
119.2 |
120.0 |
| C6 |
C7 |
C8 |
120.2 |
120.0 |
| C6 |
C7 |
H7 |
119.9 |
120.0 |
| C8 |
C7 |
H7 |
119.9 |
120.0 |
| C7 |
C8 |
C9 |
119.5 |
120.0 |
| C7 |
C8 |
H8 |
120.3 |
120.0 |
| C9 |
C8 |
H8 |
120.3 |
120.0 |
| C8 |
C9 |
H9 |
119.9 |
120.0 |
| C10 |
C9 |
H9 |
120.0 |
120.0 |
| C11 |
C12 |
H12 |
108.7 |
109.5 |
| C11 |
C12 |
H12A |
108.7 |
109.5 |
| C13 |
C12 |
H12 |
108.7 |
109.5 |
| C13 |
C12 |
H12A |
108.8 |
109.5 |
| H12 |
C12 |
H12A |
110.2 |
109.5 |
| C19 |
C13 |
H13 |
109.8 |
109.5 |
| C14 |
C13 |
H13 |
109.7 |
109.4 |
| C15 |
C14 |
H14 |
109.4 |
109.5 |
| C15 |
C14 |
H14A |
109.4 |
109.4 |
| H14 |
C14 |
H14A |
109.6 |
109.5 |
| C17 |
C15 |
H15 |
109.6 |
109.5 |
| C16 |
C15 |
H15 |
110.1 |
109.5 |
| C15 |
C16 |
H16 |
108.7 |
109.5 |
| C15 |
C16 |
H16A |
108.7 |
109.5 |
| H16 |
C16 |
H16A |
110.2 |
109.4 |
| C18 |
C17 |
H17 |
109.4 |
109.5 |
| C18 |
C17 |
H17A |
109.4 |
109.5 |
| C17 |
C18 |
C20 |
109.2 |
109.5 |
| C17 |
C18 |
C19 |
109.7 |
109.5 |
| C17 |
C18 |
H18 |
109.4 |
109.5 |
| H17 |
C17 |
H17A |
109.6 |
109.4 |
| C19 |
C18 |
C20 |
109.2 |
109.5 |
| C20 |
C18 |
H18 |
109.9 |
109.5 |
| C18 |
C20 |
H20 |
108.8 |
109.5 |
| C18 |
C20 |
H20A |
108.8 |
109.5 |
| C19 |
C18 |
H18 |
109.4 |
109.4 |
| C18 |
C19 |
H19 |
109.3 |
109.5 |
| C18 |
C19 |
H19A |
109.3 |
109.5 |
| H19 |
C19 |
H19A |
109.7 |
109.5 |
| H20 |
C20 |
H20A |
110.2 |
109.4 |
Torsion Angles for 593
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C1 |
N1 |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
N1 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
N1 |
H1B |
240.0 |
240.0 |
| N1 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
| N1 |
C1 |
H1 |
H1B |
240.0 |
239.9 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
119.9 |
| N1 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
| N1 |
C1 |
H1A |
H1B |
120.0 |
120.0 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.1 |
| N1 |
C1 |
H1B |
H1 |
120.0 |
120.1 |
| N1 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
H1B |
H1A |
120.0 |
119.9 |
| C4 |
N1 |
C1 |
H1 |
180.0 |
269.7 |
| C4 |
N1 |
C1 |
H1A |
300.0 |
29.7 |
| C4 |
N1 |
C1 |
H1B |
60.0 |
149.7 |
| C2 |
N1 |
C1 |
H1 |
359.7 |
90.0 |
| C2 |
N1 |
C1 |
H1A |
119.7 |
210.0 |
| C2 |
N1 |
C1 |
H1B |
239.8 |
329.9 |
| C4 |
N2 |
C3 |
C5 |
233.5 |
241.4 |
| N2 |
C4 |
N3 |
HN3 |
0.0 |
360.0 |
| N2 |
C4 |
N3 |
HN3A |
180.0 |
180.0 |
| C3 |
N2 |
C4 |
N3 |
172.2 |
179.9 |
| N2 |
C3 |
C5 |
C10 |
150.5 |
335.5 |
| C5 |
C3 |
N2 |
C4 |
233.5 |
241.4 |
| C6 |
C5 |
C3 |
C10 |
179.8 |
180.3 |
| C3 |
C5 |
C10 |
C9 |
180.0 |
179.8 |
| C3 |
C5 |
C10 |
H10 |
360.0 |
360.0 |
| HN3 |
N3 |
C4 |
HN3A |
180.0 |
180.0 |
| C4 |
N3 |
HN3 |
HN3A |
180.0 |
180.0 |
| C4 |
N3 |
HN3A |
HN3 |
180.0 |
180.0 |
| C3 |
C5 |
C6 |
C10 |
180.2 |
179.7 |
| C6 |
C5 |
C10 |
C9 |
0.2 |
359.5 |
| C6 |
C5 |
C10 |
H10 |
180.2 |
179.7 |
| C5 |
C10 |
C9 |
H9 |
179.9 |
180.3 |
| C7 |
C6 |
C5 |
C10 |
359.9 |
0.3 |
| C8 |
C7 |
C6 |
H7 |
180.0 |
180.0 |
| C6 |
C7 |
C8 |
C9 |
360.0 |
0.0 |
| C6 |
C7 |
C8 |
H8 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
C10 |
179.9 |
180.2 |
| H6 |
C6 |
C7 |
C8 |
180.0 |
180.0 |
| H6 |
C6 |
C7 |
H7 |
0.0 |
0.0 |
| C8 |
C7 |
C6 |
H6 |
180.0 |
180.0 |
| C6 |
C7 |
C8 |
H7 |
180.0 |
180.0 |
| C9 |
C8 |
C7 |
H8 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
H9 |
180.1 |
180.0 |
| H7 |
C7 |
C6 |
H6 |
0.0 |
0.0 |
| C6 |
C7 |
H7 |
C8 |
180.0 |
180.0 |
| H7 |
C7 |
C8 |
C9 |
180.0 |
180.0 |
| H7 |
C7 |
C8 |
H8 |
0.0 |
0.0 |
| C5 |
C10 |
C9 |
C8 |
359.9 |
0.5 |
| C9 |
C8 |
C7 |
H7 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
H8 |
180.0 |
180.0 |
| C10 |
C9 |
C8 |
H9 |
180.0 |
179.8 |
| H8 |
C8 |
C7 |
H7 |
0.0 |
0.0 |
| C7 |
C8 |
H8 |
C9 |
180.0 |
180.0 |
| H8 |
C8 |
C9 |
H9 |
0.1 |
0.0 |
| C5 |
C10 |
C9 |
H10 |
180.0 |
180.2 |
| C10 |
C9 |
C8 |
H8 |
180.1 |
179.8 |
| C8 |
C9 |
C10 |
H9 |
180.0 |
180.2 |
| H9 |
C9 |
C8 |
H8 |
0.1 |
0.0 |
| C5 |
C10 |
H10 |
C9 |
180.0 |
179.8 |
| H10 |
C10 |
C9 |
H9 |
359.8 |
0.1 |
| C20 |
C11 |
C12 |
H12 |
62.8 |
60.0 |
| C20 |
C11 |
C12 |
H12A |
182.8 |
180.0 |
| C16 |
C11 |
C12 |
H12 |
177.6 |
180.0 |
| C16 |
C11 |
C12 |
H12A |
297.6 |
300.0 |
| C13 |
C12 |
C11 |
H12 |
240.0 |
240.0 |
| C13 |
C12 |
C11 |
H12A |
120.0 |
120.0 |
| H12 |
C12 |
C11 |
H12A |
240.0 |
239.9 |
| C11 |
C12 |
C13 |
H12 |
120.0 |
120.0 |
| C11 |
C12 |
C13 |
H12A |
240.0 |
240.0 |
| H12 |
C12 |
C13 |
H12A |
120.0 |
120.0 |
| C11 |
C12 |
H12 |
H12A |
119.1 |
120.1 |
| C13 |
C12 |
H12 |
H12A |
240.9 |
240.0 |
| C11 |
C12 |
H12A |
H12 |
240.9 |
239.9 |
| C13 |
C12 |
H12A |
H12 |
119.1 |
120.0 |
| C19 |
C13 |
C12 |
H12 |
299.3 |
300.0 |
| C19 |
C13 |
C12 |
H12A |
179.3 |
180.0 |
| C14 |
C13 |
C19 |
H13 |
239.8 |
240.0 |
| C14 |
C13 |
C12 |
H12 |
179.9 |
180.0 |
| C14 |
C13 |
C12 |
H12A |
59.8 |
59.9 |
| C19 |
C13 |
C14 |
H13 |
120.3 |
120.0 |
| H13 |
C13 |
C12 |
H12 |
59.6 |
60.0 |
| H13 |
C13 |
C12 |
H12A |
299.6 |
300.0 |
| C15 |
C14 |
C13 |
H13 |
179.9 |
179.9 |
| H14 |
C14 |
C15 |
H14A |
120.0 |
120.0 |
| H14 |
C14 |
C13 |
H13 |
300.0 |
299.9 |
| C15 |
C14 |
H14 |
H14A |
240.1 |
240.0 |
| H14A |
C14 |
C13 |
H13 |
59.9 |
60.0 |
| C15 |
C14 |
H14A |
H14 |
119.9 |
120.0 |
| C17 |
C15 |
C14 |
H14 |
299.7 |
300.0 |
| C17 |
C15 |
C14 |
H14A |
179.7 |
180.0 |
| C16 |
C15 |
C17 |
H15 |
239.6 |
240.0 |
| C17 |
C15 |
C16 |
H16 |
180.0 |
180.0 |
| C17 |
C15 |
C16 |
H16A |
60.0 |
60.0 |
| C16 |
C15 |
C14 |
H14 |
180.3 |
180.0 |
| C16 |
C15 |
C14 |
H14A |
60.3 |
60.0 |
| C17 |
C15 |
C16 |
H15 |
120.2 |
120.0 |
| H16 |
C16 |
C15 |
H16A |
120.0 |
120.0 |
| H15 |
C15 |
C14 |
H14 |
59.9 |
60.0 |
| H15 |
C15 |
C14 |
H14A |
299.9 |
300.0 |
| H15 |
C15 |
C16 |
H16 |
59.9 |
60.0 |
| H15 |
C15 |
C16 |
H16A |
299.9 |
300.1 |
| H16 |
C16 |
C15 |
H15 |
59.9 |
60.0 |
| C15 |
C16 |
H16 |
H16A |
241.0 |
240.0 |
| H16A |
C16 |
C15 |
H15 |
299.9 |
300.1 |
| C15 |
C16 |
H16A |
H16 |
119.0 |
120.0 |
| C18 |
C17 |
C15 |
H15 |
181.2 |
180.0 |
| H17 |
C17 |
C18 |
H17A |
120.0 |
120.0 |
| C19 |
C18 |
C17 |
C20 |
119.6 |
120.0 |
| C20 |
C18 |
C17 |
H18 |
120.3 |
120.0 |
| C17 |
C18 |
C20 |
H20 |
299.9 |
300.0 |
| C17 |
C18 |
C20 |
H20A |
179.9 |
180.0 |
| C19 |
C18 |
C17 |
H18 |
240.0 |
240.0 |
| C17 |
C18 |
C19 |
H19 |
180.5 |
180.0 |
| C17 |
C18 |
C19 |
H19A |
60.6 |
60.0 |
| H17 |
C17 |
C15 |
H15 |
301.2 |
300.0 |
| C18 |
C17 |
H17 |
H17A |
240.1 |
240.0 |
| H17 |
C17 |
C18 |
C20 |
179.1 |
180.0 |
| H17 |
C17 |
C18 |
C19 |
298.7 |
300.0 |
| H17 |
C17 |
C18 |
H18 |
58.8 |
60.0 |
| H17A |
C17 |
C15 |
H15 |
61.2 |
60.0 |
| C18 |
C17 |
H17A |
H17 |
119.9 |
120.0 |
| H17A |
C17 |
C18 |
C20 |
59.1 |
60.0 |
| H17A |
C17 |
C18 |
C19 |
178.7 |
180.0 |
| H17A |
C17 |
C18 |
H18 |
298.8 |
300.0 |
| C20 |
C18 |
C17 |
H17 |
179.1 |
180.0 |
| C20 |
C18 |
C17 |
H17A |
59.1 |
60.0 |
| C17 |
C18 |
C20 |
C19 |
120.0 |
120.0 |
| C17 |
C18 |
C20 |
H18 |
240.0 |
240.0 |
| C19 |
C18 |
C20 |
H18 |
120.0 |
120.0 |
| C20 |
C18 |
C19 |
H19 |
300.2 |
300.0 |
| C20 |
C18 |
C19 |
H19A |
180.3 |
180.0 |
| H20 |
C20 |
C18 |
H20A |
120.0 |
119.9 |
| C18 |
C19 |
C13 |
H13 |
179.9 |
180.0 |
| C19 |
C18 |
C17 |
H17 |
298.7 |
300.0 |
| C19 |
C18 |
C17 |
H17A |
178.7 |
180.0 |
| C17 |
C18 |
C19 |
C20 |
240.3 |
240.0 |
| C17 |
C18 |
C19 |
H18 |
120.0 |
120.0 |
| C20 |
C18 |
C19 |
H18 |
239.7 |
240.0 |
| C19 |
C18 |
C20 |
H20 |
180.0 |
180.0 |
| C19 |
C18 |
C20 |
H20A |
59.9 |
60.0 |
| H19 |
C19 |
C18 |
H19A |
120.0 |
120.0 |
| H18 |
C18 |
C17 |
H17 |
58.8 |
60.0 |
| H18 |
C18 |
C17 |
H17A |
298.8 |
300.0 |
| C17 |
C18 |
H18 |
C20 |
119.9 |
120.0 |
| C17 |
C18 |
H18 |
C19 |
239.8 |
240.0 |
| C19 |
C18 |
H18 |
C20 |
240.1 |
240.0 |
| H18 |
C18 |
C20 |
H20 |
59.9 |
60.0 |
| H18 |
C18 |
C20 |
H20A |
299.9 |
300.1 |
| H18 |
C18 |
C19 |
H19 |
60.5 |
60.0 |
| H18 |
C18 |
C19 |
H19A |
300.6 |
300.0 |
| H19 |
C19 |
C13 |
H13 |
300.0 |
300.0 |
| H19 |
C19 |
C18 |
C20 |
300.2 |
300.0 |
| H19 |
C19 |
C18 |
H18 |
60.5 |
60.0 |
| C18 |
C19 |
H19 |
H19A |
240.3 |
240.0 |
| H19A |
C19 |
C13 |
H13 |
60.0 |
60.0 |
| H19A |
C19 |
C18 |
C20 |
180.3 |
180.0 |
| H19A |
C19 |
C18 |
H18 |
300.6 |
300.0 |
| C18 |
C19 |
H19A |
H19 |
119.7 |
120.0 |
| H20 |
C20 |
C18 |
H18 |
59.9 |
60.0 |
| C18 |
C20 |
H20 |
H20A |
240.8 |
240.0 |
| H20A |
C20 |
C18 |
H18 |
299.9 |
300.1 |
| C18 |
C20 |
H20A |
H20 |
119.2 |
120.0 |