PDB Chemical Component 586

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 586

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C34 O6 1.218 1.215
C30 C34 1.495 1.479
C34 N4 1.335 1.347
N4 C35 1.455 1.466
N4 HN4 1.000 0.970
C35 C36 1.497 1.507
C35 C37 1.535 1.530
C35 H35 1.100 1.091
C42 C36 1.401 1.383
C36 C38 1.396 1.383
C42 C41 1.402 1.383
C42 H42 1.080 1.080
C41 C40 1.392 1.382
C41 H41 1.080 1.080
C40 C39 1.400 1.382
C40 H40 1.079 1.080
C38 C39 1.404 1.382
C39 H39 1.080 1.080
C38 H38 1.080 1.080
C37 H37 1.100 1.090
C37 H37A 1.100 1.090
C37 H37B 1.100 1.090
C31 C30 1.381 1.396
C29 C30 1.373 1.393
C32 C31 1.392 1.388
C31 H31 1.080 1.080
N5 C32 1.420 1.398
C33 C32 1.399 1.387
C43 N5 1.474 1.465
N5 S 1.551 1.656
O8 S 1.427 1.421
S C44 1.683 1.814
S O7 1.430 1.421
C44 H44 1.100 1.090
C44 H44A 1.100 1.091
C44 H44B 1.100 1.089
C43 H43 1.100 1.090
C43 H43A 1.100 1.089
C43 H43B 1.100 1.090
C33 C27 1.390 1.396
C33 H33 1.080 1.080
C27 C29 1.383 1.393
C29 H29 1.080 1.080
C28 C27 1.499 1.479
O5 C28 1.223 1.216
C28 N1 1.357 1.348
N1 C5 1.442 1.466
N1 HN1 1.000 0.970
C1 C5 1.539 1.530
C5 C6 1.541 1.530
C5 H5 1.099 1.090
C6 O2 1.426 1.429
C6 H6 1.100 1.090
C6 H6A 1.099 1.090
C21 O2 1.386 1.358
C22 C21 1.409 1.387
C21 C26 1.388 1.387
C25 C26 1.396 1.384
C26 H26 1.080 1.080
C24 C25 1.398 1.385
C25 F54 1.339 1.351
C23 C24 1.383 1.385
C24 H24 1.080 1.080
F55 C23 1.335 1.350
C23 C22 1.401 1.385
C22 H22 1.080 1.080
C3 C1 1.527 1.530
C1 O1 1.436 1.429
C1 H1 1.100 1.090
O1 HO1 0.950 0.966
C2 C3 1.511 1.530
C3 H3 1.100 1.090
C3 H3A 1.100 1.090
O9 C2 1.435 1.429
C4 C2 1.509 1.507
C2 H2 1.100 1.090
C45 O9 1.417 1.429
C45 H45 1.100 1.089
C45 H45A 1.100 1.090
C45 H45B 1.100 1.090
O3 C4 1.237 1.213
C4 N2 1.341 1.348
C8 N2 1.456 1.465
N2 HN2 1.000 0.970
C9 C8 1.525 1.507
C8 C10 1.538 1.529
C8 H8 1.100 1.090
C11 C10 1.539 1.530
C12 C10 1.529 1.530
C10 H10 1.100 1.090
C12 H12 1.100 1.090
C12 H12A 1.100 1.090
C12 H12B 1.100 1.090
C11 H11 1.100 1.090
C11 H11A 1.100 1.091
C11 H11B 1.100 1.090
O4 C9 1.237 1.213
N3 C9 1.346 1.348
C13 N3 1.452 1.465
N3 HN3 1.000 0.970
C14 C13 1.506 1.507
C13 H13 1.100 1.090
C13 H13A 1.100 1.090
C19 C14 1.397 1.382
C14 C15 1.390 1.382
C18 C19 1.397 1.382
C19 H19 1.080 1.080
C18 C17 1.396 1.383
C18 H18 1.080 1.080
C17 C16 1.389 1.382
C17 H17 1.080 1.080
C16 C15 1.395 1.383
C16 H16 1.080 1.079
C15 H15 1.080 1.080

Bond Angles for 586

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C34 N4 C35 123.7 120.0
C34 N4 HN4 118.1 120.1
C35 N4 HN4 118.1 119.9
N4 C35 C36 109.1 109.5
N4 C35 C37 109.8 109.5
N4 C35 H35 109.9 109.5
C36 C35 C37 110.6 109.5
C36 C35 H35 109.1 109.4
C35 C36 C38 119.8 120.1
C37 C35 H35 108.4 109.5
C35 C37 H37 109.5 109.4
C35 C37 H37A 109.4 109.5
C35 C37 H37B 109.5 109.5
C42 C36 C38 118.9 120.0
C36 C38 C39 120.8 120.0
C36 C38 H38 119.6 119.9
C41 C42 H42 119.7 120.0
C42 C41 C40 120.3 120.0
C42 C41 H41 119.9 120.0
C40 C41 H41 119.8 120.0
C41 C40 C39 119.6 120.0
C41 C40 H40 120.2 120.0
C39 C40 H40 120.2 120.0
C40 C39 H39 120.1 120.0
C38 C39 H39 120.1 119.9
H37 C37 H37A 109.5 109.5
H37 C37 H37B 109.5 109.5
H37A C37 H37B 109.5 109.5
C32 C31 H31 119.6 119.9
N5 S C44 109.9 104.5
N5 S O7 112.9 104.3
O8 S C44 108.6 110.5
O8 S O7 110.7 121.0
C44 S O7 106.6 110.6
S C44 H44 109.5 109.5
S C44 H44A 109.5 109.4
S C44 H44B 109.4 109.5
H44 C44 H44A 109.5 109.4
H44 C44 H44B 109.4 109.5
H44A C44 H44B 109.5 109.5
H43 C43 H43A 109.4 109.5
H43 C43 H43B 109.4 109.5
H43A C43 H43B 109.5 109.5
C27 C33 H33 120.0 119.9
C33 C27 C29 120.4 119.9
C27 C29 H29 120.1 120.1
O5 C28 N1 123.9 120.0
C28 N1 C5 124.0 120.0
C28 N1 HN1 118.0 120.0
C5 N1 HN1 118.0 119.9
N1 C5 C6 110.6 109.4
N1 C5 H5 105.2 109.4
C1 C5 H5 106.2 109.5
C6 C5 H5 110.5 109.5
C5 C6 O2 114.5 109.5
C5 C6 H6 107.8 109.4
C5 C6 H6A 106.7 109.5
O2 C6 H6 107.8 109.5
O2 C6 H6A 106.7 109.5
H6 C6 H6A 113.5 109.5
C21 C26 H26 120.1 120.0
C25 C26 H26 120.2 120.0
C23 C24 H24 120.4 119.9
F55 C23 C22 120.6 120.0
C23 C22 H22 119.9 120.0
C3 C1 H1 107.9 109.5
O1 C1 H1 109.9 109.5
C1 O1 HO1 109.5 114.0
C2 C3 H3 107.9 109.4
C2 C3 H3A 106.7 109.5
H3 C3 H3A 113.4 109.5
O9 C2 H2 110.8 109.5
C4 C2 H2 109.3 109.5
H45 C45 H45A 109.5 109.5
H45 C45 H45B 109.5 109.5
H45A C45 H45B 109.5 109.4
O3 C4 N2 124.5 120.0
C4 N2 HN2 119.5 120.0
C8 N2 HN2 119.6 120.0
C9 C8 H8 109.2 109.4
C10 C8 H8 106.3 109.5
C8 C10 H10 105.9 109.5
C11 C10 H10 108.3 109.5
C12 C10 H10 108.8 109.5
H12 C12 H12A 109.5 109.4
H12 C12 H12B 109.4 109.5
H12A C12 H12B 109.5 109.4
H11 C11 H11A 109.5 109.4
H11 C11 H11B 109.4 109.5
H11A C11 H11B 109.5 109.5
C13 N3 HN3 118.8 120.0
C14 C13 H13 109.2 109.5
C14 C13 H13A 109.1 109.5
H13 C13 H13A 110.0 109.5
C19 C14 C15 119.7 120.0
C14 C15 C16 120.2 120.0
C14 C15 H15 119.9 120.0
C18 C19 H19 119.8 120.0
C17 C18 H18 120.2 120.0
C18 C17 C16 120.3 120.0
C18 C17 H17 119.9 120.0
C16 C17 H17 119.8 120.0
C17 C16 C15 120.0 120.0
C17 C16 H16 120.0 120.0
C15 C16 H16 120.0 120.0
C16 C15 H15 119.9 120.0

Torsion Angles for 586

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C30 C34 N4 HN4 0.4 0.3
C35 N4 C34 HN4 180.0 180.0
C34 N4 C35 C36 110.2 155.0
C34 N4 C35 C37 231.5 275.0
C34 N4 C35 H35 350.6 35.0
C34 N4 C35 HN4 180.0 180.0
C36 C35 N4 C37 238.7 240.0
C36 C35 N4 H35 119.6 120.0
N4 C35 C36 C38 237.2 220.0
C37 C35 N4 H35 240.9 240.0
N4 C35 C37 H37 213.2 60.0
N4 C35 C37 H37A 333.2 180.0
N4 C35 C37 H37B 93.2 300.0
C34 N4 HN4 C35 180.0 180.0
HN4 N4 C35 C36 290.1 334.9
HN4 N4 C35 C37 51.5 95.0
HN4 N4 C35 H35 170.6 215.0
C36 C35 N4 HN4 290.1 334.9
N4 C35 C36 C37 120.8 120.0
N4 C35 C36 H35 239.9 240.0
C37 C35 C36 H35 119.1 120.0
C36 C35 C37 H37 333.6 180.0
C36 C35 C37 H37A 93.5 300.0
C36 C35 C37 H37B 213.6 60.0
C42 C36 C35 C38 180.3 180.3
C35 C36 C38 C39 179.8 179.8
C35 C36 C38 H38 359.8 360.0
C37 C35 N4 HN4 51.5 95.0
N4 C35 C37 C36 239.6 240.0
N4 C35 C37 H35 120.1 120.0
C36 C35 C37 H35 240.5 240.1
C37 C35 C36 C38 116.4 100.0
H37 C37 C35 H37A 240.0 240.0
H37 C37 C35 H37B 120.0 120.0
H37A C37 C35 H37B 240.0 240.0
H35 C35 N4 HN4 170.6 215.0
N4 C35 H35 C36 119.5 120.0
N4 C35 H35 C37 240.0 240.0
C36 C35 H35 C37 120.5 120.0
H35 C35 C36 C38 357.3 340.0
H35 C35 C37 H37 93.1 300.0
H35 C35 C37 H37A 213.1 60.0
H35 C35 C37 H37B 333.1 180.0
C42 C36 C35 C37 296.8 280.3
C42 C36 C35 H35 177.6 160.3
C35 C36 C42 C38 179.7 179.7
C42 C36 C38 C39 359.5 359.5
C42 C36 C38 H38 179.5 179.7
C38 C36 C35 C37 116.4 100.0
C38 C36 C35 H35 357.3 340.0
C36 C38 C39 H39 180.4 180.2
C41 C42 C36 C38 0.5 0.3
C40 C41 C42 H41 180.0 180.0
C42 C41 C40 C39 0.3 0.0
C42 C41 C40 H40 180.3 180.0
H42 C42 C36 C38 180.5 180.2
H42 C42 C41 C40 179.6 180.0
H42 C42 C41 H41 359.6 0.0
C40 C41 C42 H42 179.6 180.0
C42 C41 C40 H41 180.0 180.0
C39 C40 C41 H40 180.0 180.0
C41 C40 C39 H39 179.7 180.0
H41 C41 C42 H42 359.6 0.0
C42 C41 H41 C40 180.0 180.0
H41 C41 C40 C39 180.3 180.0
H41 C41 C40 H40 0.3 0.0
C36 C38 C39 C40 0.3 0.4
C39 C40 C41 H41 180.3 180.0
C41 C40 C39 H40 180.0 180.0
C38 C39 C40 H39 180.0 179.8
H40 C40 C41 H41 0.3 0.0
C41 C40 H40 C39 180.0 180.0
H40 C40 C39 H39 359.7 0.0
C36 C38 C39 H38 180.0 180.2
C38 C39 C40 H40 179.7 179.8
C40 C39 C38 H39 180.0 180.2
H39 C39 C40 H40 359.7 0.0
C36 C38 H38 C39 180.0 179.8
H38 C38 C39 H39 0.4 0.0
H37 C37 C35 H35 93.1 300.0
C35 C37 H37 H37A 120.0 120.0
C35 C37 H37 H37B 240.0 240.0
H37A C37 H37 H37B 120.0 120.0
H37A C37 C35 H35 213.1 60.0
C35 C37 H37A H37 240.0 240.0
C35 C37 H37A H37B 120.0 120.0
H37 C37 H37A H37B 240.0 239.9
H37B C37 C35 H35 333.1 180.0
C35 C37 H37B H37 120.0 120.0
C35 C37 H37B H37A 240.0 240.0
H37 C37 H37B H37A 120.0 120.0
N5 C32 C31 H31 359.7 0.0
C33 C32 C31 H31 179.2 180.0
O8 S N5 C44 118.3 243.9
O8 S N5 O7 237.2 127.8
C44 S N5 O7 118.9 243.9
N5 S C44 H44 89.7 60.1
N5 S C44 H44A 209.8 180.0
N5 S C44 H44B 329.8 300.0
N5 S O8 C44 240.9 111.7
N5 S O8 O7 124.1 243.3
C44 S O8 O7 243.2 131.6
O8 S C44 H44 331.8 171.7
O8 S C44 H44A 91.8 291.6
O8 S C44 H44B 211.8 51.6
N5 S C44 O7 237.3 111.6
O8 S C44 O7 119.4 223.2
H44 C44 S H44A 240.0 240.1
H44 C44 S H44B 120.0 120.1
H44A C44 S H44B 240.0 240.0
N5 S O7 C44 120.7 248.3
O8 S O7 C44 242.0 131.6
O7 S C44 H44 212.4 308.4
O7 S C44 H44A 332.5 68.4
O7 S C44 H44B 92.5 188.4
H44 C44 S O7 212.4 308.4
S C44 H44 H44A 120.0 119.9
S C44 H44 H44B 240.0 239.9
H44A C44 H44 H44B 120.0 120.0
H44A C44 S O7 332.5 68.4
S C44 H44A H44 240.0 240.0
S C44 H44A H44B 120.0 120.0
H44 C44 H44A H44B 240.0 240.0
H44B C44 S O7 92.5 188.4
S C44 H44B H44 120.0 120.1
S C44 H44B H44A 240.0 240.0
H44 C44 H44B H44A 120.0 120.0
H43A C43 H43 H43B 120.0 120.0
H43 C43 H43A H43B 240.0 240.0
H43 C43 H43B H43A 120.0 120.0
C33 C27 C29 H29 181.0 180.3
H33 C33 C27 C29 178.2 179.8
C29 C27 C33 H33 178.2 179.8
C28 C27 C33 H33 0.2 360.0
C28 C27 C29 H29 359.2 0.1
O5 C28 N1 C5 359.2 359.9
O5 C28 N1 HN1 179.2 180.0
C5 N1 C28 HN1 180.0 179.9
C28 N1 C5 C6 136.8 85.0
C28 N1 C5 H5 17.5 325.0
C28 N1 C5 HN1 180.0 180.1
C1 C5 N1 H5 243.8 240.0
C6 C5 N1 H5 119.3 120.0
N1 C5 C6 O2 340.3 65.0
N1 C5 C6 H6 100.3 185.0
N1 C5 C6 H6A 222.6 305.0
C28 N1 HN1 C5 180.0 179.9
HN1 N1 C5 C6 316.8 264.9
HN1 N1 C5 H5 197.5 145.0
C1 C5 N1 HN1 81.3 25.0
N1 C5 C1 H5 115.6 120.0
C6 C5 C1 H5 240.6 240.0
C1 C5 C6 H6 333.1 65.0
C1 C5 C6 H6A 95.4 185.0
C6 C5 N1 HN1 316.8 264.9
N1 C5 C6 H5 244.0 240.1
C1 C5 C6 H5 116.8 120.1
O2 C6 C5 H6 240.0 240.0
O2 C6 C5 H6A 117.7 120.0
H6 C6 C5 H6A 237.7 240.0
H5 C5 N1 HN1 197.5 145.0
N1 C5 H5 C6 119.4 120.0
H5 C5 C6 O2 96.4 185.0
H5 C5 C6 H6 216.4 305.0
H5 C5 C6 H6A 338.6 65.0
O2 C6 C5 H5 96.4 185.0
C5 C6 O2 H6 120.0 120.0
C5 C6 O2 H6A 242.3 240.0
H6 C6 O2 H6A 122.3 120.0
H6 C6 C5 H5 216.4 305.0
C5 C6 H6 O2 235.8 240.0
C5 C6 H6 H6A 117.9 120.0
O2 C6 H6 H6A 242.1 240.0
H6A C6 C5 H5 338.6 65.0
C5 C6 H6A O2 122.8 120.0
C5 C6 H6A H6 241.4 240.0
O2 C6 H6A H6 118.6 120.0
C21 O2 C6 H6 171.8 60.0
C21 O2 C6 H6A 49.5 300.0
C22 C21 C26 H26 180.8 180.2
C25 C26 C21 H26 180.0 180.1
C21 C26 C25 H26 180.0 179.9
C24 C25 C26 H26 180.2 180.0
F54 C25 C26 H26 359.8 0.1
F55 C23 C24 H24 1.3 0.0
F55 C23 C22 H22 359.7 359.7
C22 C23 C24 H24 181.2 179.7
C3 C1 C5 H5 308.8 300.1
O1 C1 C3 H1 240.1 239.9
C3 C1 O1 HO1 2.9 300.0
O1 C1 C5 H5 187.5 180.0
C3 C1 O1 H1 118.8 120.0
H1 C1 C5 H5 67.5 60.0
H1 C1 O1 HO1 244.1 179.9
HO1 O1 C1 H1 244.1 179.9
C2 C3 C1 H1 27.4 56.6
H3 C3 C2 H3A 122.2 120.0
H3 C3 C1 H1 147.5 176.6
C2 C3 H3 H3A 242.0 240.0
H3A C3 C1 H1 269.6 296.6
C2 C3 H3A H3 118.7 119.9
O9 C2 C3 H3 29.3 52.8
O9 C2 C3 H3A 267.1 292.8
C4 C2 O9 H2 120.3 120.0
C4 C2 C3 H3 147.8 172.8
C4 C2 C3 H3A 25.6 52.8
O9 C2 C4 H2 238.8 240.0
H2 C2 C3 H3 268.1 292.8
H2 C2 C3 H3A 145.9 172.8
C45 O9 C2 H2 308.4 32.9
H45A C45 H45 H45B 120.0 119.9
H45 C45 H45A H45B 240.0 240.1
H45 C45 H45B H45A 120.0 119.9
O3 C4 C2 H2 183.3 133.0
O3 C4 N2 HN2 179.7 185.1
N2 C4 C2 H2 4.3 312.9
C8 N2 C4 HN2 180.0 180.1
C4 N2 C8 HN2 180.0 179.9
C9 C8 N2 HN2 115.1 25.1
C10 C8 C9 H8 243.0 240.0
C9 C8 C10 H10 180.7 62.8
C10 C8 N2 HN2 350.9 265.1
C9 C8 C10 H8 118.8 120.0
C11 C10 C8 H10 242.0 239.9
C12 C10 C8 H10 118.4 120.0
H8 C8 N2 HN2 234.0 145.0
H8 C8 C10 H10 61.9 302.8
C11 C10 C8 H8 303.9 182.8
C8 C10 C11 H10 116.6 120.1
C12 C10 C11 H10 241.4 240.0
C12 C10 C8 H8 180.2 62.8
C8 C10 C12 H10 243.4 240.0
C11 C10 C12 H10 118.2 120.0
H10 C10 C8 H8 61.9 302.8
H12 C12 C10 H10 343.5 186.8
H12A C12 H12 H12B 120.0 119.9
H12A C12 C10 H10 103.5 306.8
H12 C12 H12A H12B 240.0 240.0
H12B C12 C10 H10 223.6 66.8
H12 C12 H12B H12A 120.0 119.9
H11 C11 C10 H10 6.9 300.0
H11A C11 H11 H11B 120.1 120.0
H11A C11 C10 H10 126.9 59.9
H11 C11 H11A H11B 240.0 240.0
H11B C11 C10 H10 246.9 179.9
H11 C11 H11B H11A 120.1 120.0
O4 C9 C8 H8 207.0 222.0
N3 C9 C8 H8 26.9 42.1
C14 C13 N3 HN3 311.2 0.0
H13 C13 C14 H13A 120.3 120.1
H13 C13 N3 HN3 71.2 120.0
C14 C13 H13 H13A 240.3 239.9
H13A C13 N3 HN3 191.5 240.0
C14 C13 H13A H13 119.8 120.1
C19 C14 C13 H13 6.0 150.3
C19 C14 C13 H13A 245.7 30.2
C19 C14 C15 C16 359.2 359.5
C19 C14 C15 H15 179.2 179.7
C15 C14 C13 H13 185.6 330.1
C15 C14 C13 H13A 65.3 210.0
C17 C16 C15 C14 0.8 0.4
C14 C15 C16 H16 180.8 180.3
C16 C15 C14 H15 180.0 179.8
C18 C19 C14 C15 0.8 0.3
H19 C19 C14 C15 180.8 180.3
C17 C18 C19 H19 179.3 180.0
C16 C17 C18 H17 180.0 180.0
C18 C17 C16 C15 359.3 359.8
C18 C17 C16 H16 179.4 180.0
H18 C18 C19 H19 359.3 0.0
H18 C18 C17 C16 180.6 179.9
H18 C18 C17 H17 0.6 360.0
C14 C15 C16 C17 0.8 0.4
C16 C17 C18 H18 180.6 179.9
C18 C17 C16 H17 180.0 180.0
C15 C16 C17 H16 180.0 179.9
C17 C16 C15 H15 180.8 180.2
H17 C17 C18 H18 0.6 360.0
C18 C17 H17 C16 180.0 180.0
H17 C17 C16 C15 179.3 179.8
H17 C17 C16 H16 359.3 359.9
C14 C15 C16 H15 180.0 180.2
C15 C16 C17 H17 179.3 179.8
C17 C16 C15 H16 180.0 180.1
H16 C16 C17 H17 359.3 359.9
C17 C16 H16 C15 180.0 179.9
H16 C16 C15 H15 0.7 0.1
C14 C15 H15 C16 180.0 179.8
H15 C15 C16 H16 0.7 0.1