PDB Chemical Component 57Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 57Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O23 |
C22 |
1.369 |
1.359 |
| C21 |
C22 |
1.386 |
1.400 |
| C21 |
C20 |
1.394 |
1.358 |
| C22 |
C4 |
1.409 |
1.362 |
| C20 |
C19 |
1.408 |
1.405 |
| C4 |
C3 |
1.552 |
1.507 |
| C4 |
C5 |
1.396 |
1.411 |
| C2 |
C3 |
1.509 |
1.530 |
| C2 |
C1 |
1.508 |
1.531 |
| C19 |
C5 |
1.412 |
1.468 |
| C19 |
C8 |
1.427 |
1.400 |
| C10 |
N11 |
1.388 |
1.306 |
| C10 |
C9 |
1.401 |
1.369 |
| C5 |
N6 |
1.381 |
1.322 |
| N11 |
C12 |
1.313 |
1.304 |
| C9 |
C8 |
1.485 |
1.466 |
| C9 |
S13 |
1.718 |
1.763 |
| C8 |
N7 |
1.353 |
1.353 |
| C12 |
C14 |
1.452 |
1.475 |
| C12 |
S13 |
1.719 |
1.761 |
| C15 |
C14 |
1.354 |
1.398 |
| C15 |
C16 |
1.378 |
1.390 |
| N6 |
N7 |
1.355 |
1.399 |
| C14 |
C18 |
1.356 |
1.402 |
| O17 |
C16 |
1.334 |
1.357 |
| C16 |
CA |
1.367 |
1.402 |
| C18 |
N |
1.339 |
1.311 |
| CA |
N |
1.325 |
1.331 |
| CA |
C |
1.487 |
1.475 |
| C |
OXT |
1.231 |
1.214 |
| C |
O |
1.361 |
1.348 |
| C20 |
H1 |
1.080 |
1.080 |
| C21 |
H2 |
1.080 |
1.081 |
| C15 |
H3 |
1.080 |
1.080 |
| C18 |
H4 |
1.080 |
1.080 |
| C10 |
H5 |
1.080 |
1.080 |
| C1 |
H6 |
1.100 |
1.090 |
| C1 |
H7 |
1.100 |
1.090 |
| C1 |
H8 |
1.100 |
1.089 |
| C3 |
H9 |
1.100 |
1.090 |
| C3 |
H10 |
1.100 |
1.090 |
| C2 |
H11 |
1.100 |
1.090 |
| C2 |
H12 |
1.100 |
1.090 |
| N7 |
H13 |
1.000 |
0.969 |
| O23 |
H14 |
0.950 |
0.967 |
| O17 |
H15 |
0.950 |
0.967 |
| O |
H16 |
0.950 |
0.966 |
Bond Angles for 57Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C21 |
C22 |
C4 |
126.2 |
121.5 |
| C22 |
C21 |
H2 |
119.9 |
119.1 |
| C21 |
C20 |
C19 |
117.5 |
119.6 |
| C21 |
C20 |
H1 |
121.2 |
120.2 |
| C22 |
C4 |
C3 |
123.0 |
120.2 |
| C20 |
C19 |
C5 |
118.7 |
119.0 |
| C20 |
C19 |
C8 |
136.1 |
134.6 |
| C19 |
C20 |
H1 |
121.2 |
120.2 |
| C5 |
C4 |
C3 |
126.2 |
120.2 |
| C4 |
C3 |
H9 |
110.8 |
109.5 |
| C4 |
C3 |
H10 |
110.8 |
109.5 |
| C19 |
C5 |
C4 |
126.5 |
118.6 |
| C4 |
C5 |
N6 |
127.6 |
134.4 |
| C2 |
C3 |
H9 |
110.8 |
109.5 |
| C2 |
C3 |
H10 |
110.8 |
109.5 |
| C2 |
C1 |
H6 |
109.5 |
109.5 |
| C2 |
C1 |
H7 |
109.5 |
109.4 |
| C2 |
C1 |
H8 |
109.5 |
109.5 |
| C5 |
C19 |
C8 |
105.2 |
106.4 |
| C19 |
C5 |
N6 |
105.8 |
107.0 |
| C19 |
C8 |
N7 |
110.5 |
107.4 |
| C9 |
C10 |
N11 |
115.5 |
115.3 |
| C10 |
N11 |
C12 |
112.0 |
117.3 |
| N11 |
C10 |
H5 |
122.3 |
122.3 |
| C10 |
C9 |
C8 |
127.1 |
126.1 |
| C10 |
C9 |
S13 |
107.1 |
107.9 |
| C9 |
C10 |
H5 |
122.3 |
122.4 |
| C5 |
N6 |
N7 |
112.4 |
109.4 |
| N11 |
C12 |
S13 |
112.9 |
109.5 |
| C9 |
C8 |
N7 |
122.8 |
126.3 |
| C9 |
S13 |
C12 |
92.5 |
90.0 |
| C8 |
N7 |
H13 |
127.0 |
125.1 |
| C14 |
C15 |
C16 |
119.0 |
118.3 |
| C15 |
C14 |
C18 |
114.7 |
119.1 |
| C14 |
C15 |
H3 |
120.5 |
120.9 |
| C15 |
C16 |
CA |
122.8 |
119.1 |
| C16 |
C15 |
H3 |
120.5 |
120.8 |
| N6 |
N7 |
H13 |
127.0 |
125.1 |
| C14 |
C18 |
N |
127.8 |
120.9 |
| C14 |
C18 |
H4 |
116.1 |
119.6 |
| C16 |
CA |
N |
118.7 |
120.7 |
| C16 |
CA |
C |
123.2 |
119.6 |
| C18 |
N |
CA |
117.0 |
121.8 |
| N |
C18 |
H4 |
116.1 |
119.5 |
| C |
CA |
N |
118.1 |
119.7 |
| CA |
C |
OXT |
124.8 |
120.0 |
| CA |
C |
O |
109.2 |
120.0 |
| OXT |
C |
O |
125.8 |
120.0 |
| C |
O |
H16 |
109.5 |
117.0 |
| H6 |
C1 |
H7 |
109.5 |
109.5 |
| H6 |
C1 |
H8 |
109.5 |
109.5 |
| H7 |
C1 |
H8 |
109.4 |
109.5 |
| H9 |
C3 |
H10 |
109.5 |
109.4 |
| H11 |
C2 |
H12 |
109.4 |
109.5 |
Torsion Angles for 57Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O23 |
C22 |
C21 |
H2 |
1.3 |
360.0 |
| C22 |
C21 |
C20 |
C19 |
359.3 |
360.0 |
| C22 |
C21 |
C20 |
H1 |
179.3 |
179.8 |
| C21 |
C22 |
C4 |
C3 |
180.4 |
179.8 |
| C21 |
C20 |
C19 |
C5 |
359.7 |
359.8 |
| C21 |
C20 |
C19 |
C8 |
180.8 |
179.7 |
| C19 |
C20 |
C21 |
H1 |
180.0 |
180.2 |
| C4 |
C22 |
C21 |
H2 |
179.9 |
180.5 |
| C5 |
C4 |
C22 |
C3 |
181.4 |
179.5 |
| C22 |
C4 |
C3 |
H9 |
8.8 |
29.5 |
| C22 |
C4 |
C3 |
H10 |
130.5 |
149.5 |
| C22 |
C4 |
C5 |
N6 |
181.3 |
180.5 |
| C21 |
C20 |
C19 |
H1 |
180.0 |
179.8 |
| C20 |
C19 |
C5 |
C4 |
2.3 |
359.9 |
| C5 |
C19 |
C20 |
C8 |
178.9 |
180.1 |
| C20 |
C19 |
C5 |
N6 |
178.8 |
180.0 |
| C20 |
C19 |
C8 |
N7 |
179.9 |
180.1 |
| C19 |
C5 |
C4 |
C3 |
178.6 |
180.0 |
| C3 |
C4 |
C5 |
N6 |
2.8 |
359.9 |
| C2 |
C3 |
C4 |
H9 |
240.9 |
240.0 |
| C2 |
C3 |
C4 |
H10 |
119.2 |
120.0 |
| H9 |
C3 |
C4 |
H10 |
238.3 |
240.0 |
| C21 |
C22 |
C4 |
C5 |
1.8 |
359.2 |
| C22 |
C4 |
C5 |
C3 |
178.5 |
180.5 |
| C5 |
C4 |
C3 |
H9 |
187.2 |
210.0 |
| C5 |
C4 |
C3 |
H10 |
308.9 |
330.0 |
| C4 |
C5 |
C19 |
C8 |
181.5 |
180.0 |
| C19 |
C5 |
C4 |
N6 |
175.8 |
180.1 |
| C4 |
C5 |
N6 |
N7 |
178.9 |
180.0 |
| C4 |
C3 |
C2 |
H9 |
119.1 |
120.0 |
| C4 |
C3 |
C2 |
H10 |
240.8 |
240.0 |
| C3 |
C2 |
C1 |
H6 |
180.0 |
60.0 |
| C3 |
C2 |
C1 |
H7 |
300.0 |
180.0 |
| C3 |
C2 |
C1 |
H8 |
60.0 |
300.0 |
| H9 |
C3 |
C2 |
H10 |
121.7 |
119.9 |
| H6 |
C1 |
C2 |
H7 |
240.0 |
240.0 |
| H6 |
C1 |
C2 |
H8 |
120.0 |
120.0 |
| H7 |
C1 |
C2 |
H8 |
240.0 |
240.0 |
| C20 |
C19 |
C5 |
C8 |
180.8 |
179.9 |
| C5 |
C19 |
C20 |
H1 |
179.7 |
180.0 |
| C4 |
C5 |
C19 |
N6 |
183.5 |
180.0 |
| C5 |
C19 |
C8 |
N7 |
1.0 |
360.0 |
| C19 |
C5 |
N6 |
N7 |
2.5 |
359.9 |
| C20 |
C19 |
C8 |
C5 |
179.0 |
180.1 |
| C8 |
C19 |
C20 |
H1 |
0.8 |
359.9 |
| C8 |
C19 |
C5 |
C4 |
181.5 |
180.0 |
| C8 |
C19 |
C5 |
N6 |
358.0 |
0.0 |
| C10 |
C9 |
C8 |
C19 |
342.2 |
135.0 |
| C9 |
C8 |
C19 |
N7 |
185.3 |
180.0 |
| C19 |
C8 |
N7 |
H13 |
180.5 |
180.1 |
| N11 |
C10 |
C9 |
C8 |
180.8 |
180.0 |
| N11 |
C10 |
C9 |
S13 |
2.0 |
0.0 |
| C9 |
C10 |
N11 |
H5 |
180.0 |
179.7 |
| C10 |
N11 |
C12 |
S13 |
358.9 |
0.0 |
| C9 |
C10 |
N11 |
C12 |
359.4 |
360.0 |
| N11 |
C10 |
C9 |
H5 |
180.0 |
180.3 |
| C10 |
C9 |
C8 |
N7 |
168.1 |
315.0 |
| C10 |
C9 |
S13 |
C12 |
357.8 |
360.0 |
| N6 |
C5 |
C4 |
C3 |
2.8 |
359.9 |
| C19 |
C5 |
N6 |
C4 |
183.5 |
179.9 |
| N6 |
C5 |
C19 |
C8 |
358.0 |
0.0 |
| C5 |
N6 |
N7 |
H13 |
178.1 |
180.0 |
| C12 |
N11 |
C10 |
H5 |
179.4 |
180.3 |
| C9 |
S13 |
C12 |
N11 |
2.0 |
0.0 |
| C19 |
C8 |
C9 |
N7 |
174.1 |
180.0 |
| C8 |
C9 |
C10 |
N11 |
180.8 |
180.0 |
| C10 |
C9 |
C8 |
S13 |
181.4 |
180.0 |
| C8 |
C9 |
C10 |
H5 |
0.8 |
359.7 |
| C9 |
C8 |
N7 |
H13 |
355.5 |
0.0 |
| S13 |
C9 |
C10 |
N11 |
2.0 |
0.0 |
| C10 |
C9 |
S13 |
C8 |
178.8 |
180.0 |
| S13 |
C9 |
C10 |
H5 |
182.0 |
179.7 |
| N11 |
C12 |
S13 |
C9 |
2.0 |
0.0 |
| S13 |
C9 |
C8 |
N7 |
346.7 |
135.0 |
| C5 |
N6 |
N7 |
C8 |
358.1 |
0.1 |
| N6 |
N7 |
C8 |
H13 |
180.0 |
179.9 |
| C10 |
N11 |
C12 |
C14 |
179.0 |
180.0 |
| C12 |
C14 |
C15 |
H3 |
0.8 |
359.7 |
| C12 |
C14 |
C18 |
N |
179.7 |
180.0 |
| C12 |
C14 |
C18 |
H4 |
359.8 |
360.0 |
| C14 |
C15 |
C16 |
CA |
358.3 |
360.0 |
| C16 |
C15 |
C14 |
H3 |
180.0 |
180.3 |
| C15 |
C14 |
C18 |
N |
359.4 |
0.0 |
| C15 |
C14 |
C18 |
H4 |
179.4 |
180.0 |
| C16 |
C15 |
C14 |
C18 |
1.2 |
0.0 |
| C14 |
C15 |
C16 |
H3 |
180.0 |
179.7 |
| C15 |
C16 |
CA |
N |
1.5 |
360.0 |
| C15 |
C16 |
CA |
C |
178.1 |
180.0 |
| C8 |
N7 |
N6 |
H13 |
180.0 |
180.1 |
| C18 |
C14 |
C15 |
C16 |
1.2 |
0.0 |
| C18 |
C14 |
C15 |
H3 |
181.2 |
179.7 |
| C14 |
C18 |
N |
CA |
0.4 |
359.9 |
| N |
C18 |
C14 |
H4 |
180.0 |
180.1 |
| O17 |
C16 |
C15 |
H3 |
359.5 |
0.3 |
| CA |
C16 |
C15 |
H3 |
178.3 |
180.3 |
| C18 |
N |
CA |
C16 |
359.2 |
0.1 |
| C |
CA |
C16 |
N |
176.6 |
180.1 |
| C16 |
CA |
C |
OXT |
354.5 |
359.9 |
| C16 |
CA |
C |
O |
178.6 |
180.0 |
| C14 |
C18 |
N |
H4 |
180.0 |
179.9 |
| C16 |
CA |
N |
C18 |
359.2 |
0.1 |
| C |
CA |
N |
C18 |
182.4 |
180.0 |
| C16 |
CA |
N |
C |
176.8 |
180.1 |
| CA |
N |
C18 |
H4 |
180.4 |
180.0 |
| N |
CA |
C |
OXT |
171.1 |
180.0 |
| N |
CA |
C |
O |
355.3 |
0.1 |
| C16 |
CA |
C |
N |
183.3 |
179.9 |
| C18 |
N |
CA |
C |
182.4 |
180.0 |
| OXT |
C |
CA |
O |
175.9 |
180.0 |
| CA |
C |
O |
H16 |
175.8 |
180.0 |
| OXT |
C |
CA |
N |
171.1 |
180.0 |
| CA |
C |
OXT |
O |
184.8 |
180.0 |
| OXT |
C |
O |
H16 |
0.0 |
0.1 |
| O |
C |
CA |
N |
355.3 |
0.1 |
| CA |
C |
O |
OXT |
175.8 |
180.0 |
| C21 |
C20 |
H1 |
C19 |
180.0 |
180.2 |
| H1 |
C20 |
C19 |
C5 |
179.7 |
180.0 |
| H1 |
C20 |
C19 |
C8 |
0.8 |
359.9 |
| H2 |
C21 |
C22 |
C4 |
179.9 |
180.5 |
| H2 |
C21 |
C20 |
C19 |
179.3 |
180.0 |
| H2 |
C21 |
C20 |
H1 |
359.3 |
359.8 |
| C14 |
C15 |
H3 |
C16 |
180.0 |
180.3 |
| H3 |
C15 |
C14 |
C18 |
181.2 |
179.7 |
| H3 |
C15 |
C16 |
CA |
178.3 |
180.3 |
| C14 |
C18 |
H4 |
N |
180.0 |
180.1 |
| H4 |
C18 |
N |
CA |
180.4 |
180.0 |
| C9 |
C10 |
H5 |
N11 |
180.0 |
180.4 |
| H5 |
C10 |
N11 |
C12 |
179.4 |
180.3 |
| H5 |
C10 |
C9 |
C8 |
0.8 |
359.7 |
| H5 |
C10 |
C9 |
S13 |
182.0 |
179.7 |
| C2 |
C1 |
H6 |
H7 |
120.0 |
119.9 |
| C2 |
C1 |
H6 |
H8 |
240.0 |
240.0 |
| H7 |
C1 |
H6 |
H8 |
120.0 |
120.0 |
| C2 |
C1 |
H7 |
H6 |
240.0 |
240.0 |
| C2 |
C1 |
H7 |
H8 |
120.0 |
120.0 |
| H6 |
C1 |
H7 |
H8 |
240.0 |
239.9 |
| C2 |
C1 |
H8 |
H6 |
120.0 |
120.0 |
| C2 |
C1 |
H8 |
H7 |
240.0 |
240.1 |
| H6 |
C1 |
H8 |
H7 |
120.0 |
120.1 |
| C4 |
C3 |
H9 |
H10 |
122.5 |
120.0 |
| C2 |
C3 |
H9 |
H10 |
237.5 |
240.0 |
| C4 |
C3 |
H10 |
H9 |
237.5 |
240.0 |
| C2 |
C3 |
H10 |
H9 |
122.5 |
120.0 |
| H11 |
C2 |
C3 |
H9 |
193.5 |
300.0 |
| H11 |
C2 |
C3 |
H10 |
71.8 |
180.0 |
| H11 |
C2 |
C1 |
H6 |
58.5 |
180.0 |
| H11 |
C2 |
C1 |
H7 |
178.5 |
300.0 |
| H11 |
C2 |
C1 |
H8 |
298.4 |
60.0 |
| H12 |
C2 |
C3 |
H9 |
310.4 |
179.9 |
| H12 |
C2 |
C3 |
H10 |
188.7 |
60.0 |
| H12 |
C2 |
C1 |
H6 |
301.6 |
300.0 |
| H12 |
C2 |
C1 |
H7 |
61.6 |
60.0 |
| H12 |
C2 |
C1 |
H8 |
181.5 |
180.0 |