Atom Nomenclature for 57Y

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 57Y

Atom Name (V3) Atom Name (V2)
C20 C1
C21 C2
C15 C3
C18 C4
C10 C5
C19 C6
C14 C7
C4 C8
C5 C9
C22 C10
C16 C11
C8 C12
C9 C13
CA C14
C12 C15
C C16
C1 C17
C3 C18
C2 C19
N N1
N11 N2
N7 N3
N6 N4
OXT O1
O23 O2
O17 O3
O O4
S13 S1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16