Atom Nomenclature for 57M

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 57M

Atom Name (V3) Atom Name (V2)
C10 C1
N12 N1
C13 C2
C21 C3
C22 C4
C01 C5
C02 C6
C03 C7
C04 C8
C05 C9
C06 C10
O07 O1
N08 N2
C09 C11
C11 C12
C14 C13
O15 O2
C16 C14
O17 O3
C18 C15
C19 C16
N20 N3
O23 O4
O24 O5
C25 C17
O26 O6
C27 C18
N28 N4
C29 C19
N30 N5
C31 C20
O32 O7
O33 O8
C34 C21
C35 C22
C36 C23
C37 C24
O38 O9
O39 O10
C40 C25
O41 O11
O42 O12
N43 N6
C44 C26
O45 O13
C46 C27
N47 N7
C48 C28
O49 O14
N50 N8
C51 C29
C52 C30
C53 C31
C54 C32
C55 C33
O56 O15
O57 O16
C58 C34
N59 N9
C60 C35
N61 N10
N62 N11
C63 C36
C64 C37
H1 H1
H2 H2
H3 H3
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49
H50 H50
H51 H51
H52 H52
H53 H53
H54 H54
H55 H55
H56 H56
H57 H57
H58 H58
H59 H59
H60 H60
H61 H61
H62 H62
H63 H63