PDB Chemical Component 579
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 579
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C23 |
O2 |
1.426 |
1.429 |
C23 |
C22 |
1.521 |
1.533 |
O2 |
C25 |
1.435 |
1.429 |
C26 |
C5 |
1.501 |
1.507 |
C22 |
N21 |
1.463 |
1.471 |
C25 |
C24 |
1.531 |
1.533 |
C5 |
N6 |
1.338 |
1.341 |
C5 |
C4 |
1.480 |
1.386 |
N6 |
C7 |
1.345 |
1.378 |
O28 |
C27 |
1.220 |
1.213 |
O9 |
C8 |
1.210 |
1.217 |
N21 |
C24 |
1.464 |
1.472 |
N21 |
S18 |
1.524 |
1.656 |
C4 |
C27 |
1.484 |
1.467 |
C4 |
C3 |
1.399 |
1.416 |
C27 |
C29 |
1.504 |
1.507 |
O19 |
S18 |
1.442 |
1.420 |
C7 |
C8 |
1.495 |
1.468 |
C7 |
C3 |
1.491 |
1.362 |
C8 |
N10 |
1.339 |
1.348 |
C3 |
C2 |
1.517 |
1.507 |
S18 |
C13 |
1.641 |
1.763 |
S18 |
O20 |
1.450 |
1.421 |
C12 |
C13 |
1.398 |
1.380 |
C12 |
C11 |
1.424 |
1.388 |
C13 |
C14 |
1.398 |
1.385 |
C2 |
C1 |
1.505 |
1.530 |
N10 |
C11 |
1.379 |
1.400 |
C11 |
C16 |
1.393 |
1.388 |
C14 |
F1 |
1.348 |
1.352 |
C14 |
C15 |
1.399 |
1.384 |
C16 |
C15 |
1.390 |
1.381 |
C1 |
H1 |
1.100 |
1.090 |
C1 |
H2 |
1.100 |
1.090 |
C1 |
H3 |
1.100 |
1.090 |
C2 |
H4 |
1.100 |
1.090 |
C2 |
H5 |
1.100 |
1.090 |
C12 |
H6 |
1.080 |
1.080 |
C15 |
H7 |
1.080 |
1.081 |
C16 |
H8 |
1.080 |
1.080 |
C22 |
H9 |
1.100 |
1.090 |
C22 |
H10 |
1.100 |
1.089 |
C23 |
H11 |
1.100 |
1.090 |
C23 |
H12 |
1.100 |
1.090 |
C24 |
H13 |
1.100 |
1.090 |
C24 |
H14 |
1.100 |
1.089 |
C25 |
H15 |
1.100 |
1.090 |
C25 |
H16 |
1.100 |
1.090 |
C26 |
H17 |
1.100 |
1.090 |
C26 |
H18 |
1.100 |
1.091 |
C26 |
H19 |
1.100 |
1.090 |
C29 |
H20 |
1.100 |
1.090 |
C29 |
H21 |
1.100 |
1.090 |
C29 |
H22 |
1.100 |
1.090 |
N6 |
H23 |
1.000 |
0.971 |
N10 |
H24 |
1.000 |
0.970 |
Bond Angles for 579
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C23 |
O2 |
C25 |
110.3 |
114.2 |
C23 |
C22 |
N21 |
109.5 |
108.4 |
C23 |
C22 |
H9 |
109.5 |
109.6 |
C23 |
C22 |
H10 |
109.5 |
109.7 |
O2 |
C25 |
C24 |
111.5 |
109.2 |
O2 |
C25 |
H15 |
109.0 |
109.6 |
O2 |
C25 |
H16 |
108.9 |
109.5 |
C26 |
C5 |
N6 |
125.3 |
125.8 |
C22 |
N21 |
C24 |
122.3 |
118.0 |
C22 |
N21 |
S18 |
118.7 |
121.0 |
N21 |
C22 |
H9 |
109.4 |
109.7 |
N21 |
C22 |
H10 |
109.4 |
109.7 |
C25 |
C24 |
H13 |
109.5 |
109.7 |
C25 |
C24 |
H14 |
109.5 |
109.7 |
C5 |
N6 |
C7 |
111.4 |
109.3 |
C5 |
N6 |
H23 |
124.3 |
125.3 |
C5 |
C4 |
C27 |
122.1 |
126.5 |
N21 |
C24 |
H13 |
109.5 |
109.7 |
N21 |
C24 |
H14 |
109.5 |
109.7 |
N21 |
S18 |
O19 |
112.3 |
106.4 |
N21 |
S18 |
O20 |
110.8 |
106.4 |
C4 |
C27 |
C29 |
117.4 |
120.0 |
C27 |
C29 |
H20 |
109.5 |
109.5 |
C27 |
C29 |
H21 |
109.4 |
109.5 |
C27 |
C29 |
H22 |
109.5 |
109.4 |
O19 |
S18 |
O20 |
108.4 |
123.2 |
C7 |
C8 |
N10 |
126.0 |
120.0 |
C8 |
N10 |
C11 |
123.2 |
120.0 |
C8 |
N10 |
H24 |
118.4 |
120.1 |
C3 |
C2 |
H4 |
109.2 |
109.5 |
C3 |
C2 |
H5 |
109.3 |
109.5 |
C12 |
C13 |
C14 |
117.4 |
120.0 |
C13 |
C12 |
H6 |
119.0 |
120.0 |
C12 |
C11 |
C16 |
118.8 |
119.9 |
C13 |
C14 |
F1 |
121.2 |
119.9 |
C13 |
C14 |
C15 |
121.3 |
120.1 |
C2 |
C1 |
H1 |
109.5 |
109.5 |
C2 |
C1 |
H2 |
109.5 |
109.4 |
C2 |
C1 |
H3 |
109.4 |
109.5 |
C11 |
C16 |
C15 |
119.7 |
119.9 |
C11 |
C16 |
H8 |
120.1 |
120.1 |
C15 |
C14 |
F1 |
117.5 |
120.0 |
C14 |
C15 |
H7 |
119.6 |
120.0 |
C16 |
C15 |
H7 |
119.6 |
119.9 |
H1 |
C1 |
H2 |
109.5 |
109.4 |
H1 |
C1 |
H3 |
109.4 |
109.6 |
H2 |
C1 |
H3 |
109.5 |
109.5 |
H4 |
C2 |
H5 |
109.5 |
109.5 |
H9 |
C22 |
H10 |
109.5 |
109.7 |
H11 |
C23 |
H12 |
109.5 |
109.5 |
H13 |
C24 |
H14 |
109.5 |
109.7 |
H15 |
C25 |
H16 |
109.5 |
109.5 |
H17 |
C26 |
H18 |
109.4 |
109.5 |
H17 |
C26 |
H19 |
109.5 |
109.4 |
H18 |
C26 |
H19 |
109.5 |
109.4 |
H20 |
C29 |
H21 |
109.5 |
109.5 |
H20 |
C29 |
H22 |
109.4 |
109.5 |
H21 |
C29 |
H22 |
109.5 |
109.5 |
Torsion Angles for 579
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C23 |
O2 |
C25 |
C24 |
64.9 |
297.4 |
C23 |
O2 |
C25 |
H15 |
185.3 |
57.3 |
C23 |
O2 |
C25 |
H16 |
304.6 |
177.5 |
C22 |
C23 |
O2 |
C25 |
292.3 |
62.6 |
C23 |
C22 |
N21 |
C24 |
321.2 |
50.5 |
C23 |
C22 |
N21 |
S18 |
145.3 |
230.5 |
N21 |
C22 |
C23 |
H9 |
240.0 |
240.3 |
N21 |
C22 |
C23 |
H10 |
120.0 |
119.7 |
H9 |
C22 |
C23 |
H10 |
240.0 |
239.5 |
O2 |
C25 |
C24 |
H13 |
74.6 |
172.0 |
O2 |
C25 |
C24 |
H14 |
194.7 |
292.6 |
H15 |
C25 |
O2 |
H16 |
240.6 |
239.8 |
C26 |
C5 |
N6 |
C7 |
180.8 |
180.0 |
C26 |
C5 |
N6 |
H23 |
0.8 |
0.2 |
C26 |
C5 |
C4 |
C27 |
359.3 |
359.7 |
C23 |
C22 |
N21 |
H9 |
120.0 |
119.7 |
C23 |
C22 |
N21 |
H10 |
240.0 |
240.2 |
C22 |
N21 |
C24 |
H13 |
275.3 |
189.8 |
C22 |
N21 |
C24 |
H14 |
155.2 |
69.2 |
C22 |
N21 |
S18 |
O19 |
325.9 |
336.5 |
C22 |
N21 |
S18 |
O20 |
204.5 |
203.5 |
H9 |
C22 |
N21 |
H10 |
120.0 |
120.5 |
O2 |
C25 |
C24 |
H15 |
120.3 |
120.0 |
O2 |
C25 |
C24 |
H16 |
239.7 |
240.1 |
C22 |
N21 |
C24 |
C25 |
35.3 |
309.5 |
N21 |
C24 |
C25 |
H13 |
240.0 |
240.3 |
N21 |
C24 |
C25 |
H14 |
120.0 |
119.8 |
H13 |
C24 |
C25 |
H14 |
239.9 |
239.5 |
N6 |
C5 |
C4 |
C27 |
181.9 |
180.0 |
C5 |
C4 |
C27 |
C29 |
153.5 |
265.4 |
C5 |
N6 |
C7 |
H23 |
180.0 |
180.2 |
N6 |
C7 |
C8 |
N10 |
158.4 |
0.1 |
O28 |
C27 |
C29 |
H20 |
360.0 |
185.0 |
O28 |
C27 |
C29 |
H21 |
120.0 |
305.0 |
O28 |
C27 |
C29 |
H22 |
240.0 |
65.0 |
O9 |
C8 |
N10 |
H24 |
180.7 |
185.2 |
C22 |
N21 |
C24 |
S18 |
184.2 |
179.9 |
C24 |
N21 |
C22 |
H9 |
201.2 |
290.8 |
C24 |
N21 |
C22 |
H10 |
81.2 |
170.3 |
C25 |
C24 |
N21 |
H13 |
120.0 |
119.7 |
C25 |
C24 |
N21 |
H14 |
240.0 |
240.3 |
H13 |
C24 |
N21 |
H14 |
120.1 |
120.6 |
C22 |
N21 |
S18 |
C24 |
176.0 |
180.1 |
S18 |
N21 |
C22 |
H9 |
25.3 |
110.8 |
S18 |
N21 |
C22 |
H10 |
265.4 |
350.2 |
S18 |
N21 |
C24 |
H13 |
91.1 |
9.8 |
S18 |
N21 |
C24 |
H14 |
331.1 |
249.2 |
O19 |
S18 |
N21 |
O20 |
121.4 |
133.0 |
C4 |
C27 |
C29 |
H20 |
184.7 |
5.1 |
C4 |
C27 |
C29 |
H21 |
304.7 |
125.0 |
C4 |
C27 |
C29 |
H22 |
64.7 |
245.0 |
C4 |
C3 |
C2 |
H4 |
48.6 |
330.0 |
C4 |
C3 |
C2 |
H5 |
168.3 |
209.9 |
H20 |
C29 |
C27 |
H21 |
240.0 |
240.0 |
H20 |
C29 |
C27 |
H22 |
120.0 |
120.1 |
H21 |
C29 |
C27 |
H22 |
240.0 |
240.0 |
N21 |
S18 |
O19 |
O20 |
237.2 |
237.0 |
C5 |
N6 |
C7 |
C8 |
178.7 |
180.3 |
C7 |
C8 |
N10 |
C11 |
179.3 |
185.2 |
C7 |
C8 |
N10 |
H24 |
359.3 |
5.2 |
C7 |
C3 |
C2 |
H4 |
227.7 |
149.8 |
C7 |
C3 |
C2 |
H5 |
347.5 |
29.7 |
C3 |
C2 |
C1 |
H1 |
180.0 |
300.0 |
C3 |
C2 |
C1 |
H2 |
300.0 |
60.0 |
C3 |
C2 |
C1 |
H3 |
60.0 |
179.9 |
H4 |
C2 |
C3 |
H5 |
240.2 |
120.0 |
S18 |
C13 |
C12 |
H6 |
359.4 |
0.0 |
S18 |
C13 |
C14 |
F1 |
0.8 |
359.9 |
N21 |
S18 |
O20 |
O19 |
123.7 |
123.0 |
C13 |
C12 |
C11 |
C16 |
0.6 |
0.0 |
C12 |
C13 |
C14 |
F1 |
179.5 |
180.0 |
C12 |
C13 |
C14 |
C15 |
359.1 |
0.1 |
C8 |
N10 |
C11 |
C12 |
15.4 |
33.4 |
C12 |
C11 |
C16 |
C15 |
358.5 |
360.0 |
C12 |
C11 |
C16 |
H8 |
178.5 |
180.0 |
C14 |
C13 |
C12 |
H6 |
180.6 |
180.0 |
C15 |
C14 |
C13 |
F1 |
179.6 |
180.1 |
C13 |
C14 |
C15 |
H7 |
179.9 |
180.0 |
H1 |
C1 |
C2 |
H2 |
240.0 |
240.0 |
H1 |
C1 |
C2 |
H3 |
120.0 |
120.1 |
H2 |
C1 |
C2 |
H3 |
240.0 |
240.1 |
C8 |
N10 |
C11 |
H24 |
180.0 |
180.0 |
N10 |
C11 |
C16 |
H8 |
356.6 |
0.3 |
C8 |
N10 |
C11 |
C16 |
197.4 |
213.0 |
C11 |
C16 |
C15 |
H7 |
181.3 |
180.0 |
C13 |
C14 |
F1 |
C15 |
179.6 |
180.1 |
F1 |
C14 |
C15 |
H7 |
359.5 |
0.1 |
C13 |
C14 |
C15 |
F1 |
180.4 |
179.9 |
C11 |
C16 |
C15 |
C14 |
1.3 |
0.1 |
C16 |
C15 |
C14 |
H7 |
180.0 |
179.9 |
C11 |
C16 |
C15 |
H8 |
180.0 |
180.0 |
C16 |
C15 |
C14 |
F1 |
179.6 |
180.0 |
C14 |
C15 |
C16 |
H7 |
180.0 |
180.1 |
C2 |
C1 |
H1 |
H2 |
120.0 |
120.0 |
C2 |
C1 |
H1 |
H3 |
240.0 |
240.0 |
H2 |
C1 |
H1 |
H3 |
120.0 |
120.0 |
C2 |
C1 |
H2 |
H1 |
239.9 |
240.0 |
C2 |
C1 |
H2 |
H3 |
120.0 |
119.9 |
H1 |
C1 |
H2 |
H3 |
240.0 |
239.9 |
C2 |
C1 |
H3 |
H1 |
120.0 |
120.1 |
C2 |
C1 |
H3 |
H2 |
240.0 |
240.1 |
H1 |
C1 |
H3 |
H2 |
120.0 |
120.0 |
C3 |
C2 |
H4 |
H5 |
119.6 |
240.0 |
H4 |
C2 |
C1 |
H1 |
59.9 |
60.0 |
H4 |
C2 |
C1 |
H2 |
179.9 |
180.0 |
H4 |
C2 |
C1 |
H3 |
299.9 |
299.9 |
C3 |
C2 |
H5 |
H4 |
240.4 |
120.0 |
H5 |
C2 |
C1 |
H1 |
300.1 |
180.0 |
H5 |
C2 |
C1 |
H2 |
60.2 |
300.0 |
H5 |
C2 |
C1 |
H3 |
180.2 |
59.9 |
H6 |
C12 |
C13 |
C14 |
180.6 |
180.0 |
H6 |
C12 |
C11 |
C16 |
180.6 |
180.0 |
H7 |
C15 |
C14 |
F1 |
359.5 |
0.1 |
C11 |
C16 |
H8 |
C15 |
180.0 |
180.0 |
H8 |
C16 |
C15 |
H7 |
1.3 |
360.0 |
C23 |
C22 |
H9 |
N21 |
239.9 |
241.1 |
C23 |
C22 |
H9 |
H10 |
120.0 |
120.6 |
H9 |
C22 |
N21 |
C24 |
201.2 |
290.8 |
H9 |
C22 |
N21 |
S18 |
25.3 |
110.8 |
N21 |
C22 |
H9 |
H10 |
240.1 |
239.5 |
C23 |
C22 |
H10 |
N21 |
120.1 |
118.9 |
C23 |
C22 |
H10 |
H9 |
240.0 |
239.5 |
H10 |
C22 |
N21 |
C24 |
81.2 |
170.3 |
H10 |
C22 |
N21 |
S18 |
265.4 |
350.2 |
N21 |
C22 |
H10 |
H9 |
119.9 |
120.6 |
H11 |
C23 |
O2 |
C25 |
52.3 |
182.5 |
H11 |
C23 |
C22 |
N21 |
291.9 |
187.7 |
H11 |
C23 |
C22 |
H9 |
51.9 |
307.5 |
H11 |
C23 |
C22 |
H10 |
171.9 |
68.0 |
H12 |
C23 |
O2 |
C25 |
172.4 |
302.6 |
H12 |
C23 |
C22 |
N21 |
171.7 |
67.7 |
H12 |
C23 |
C22 |
H9 |
291.7 |
187.4 |
H12 |
C23 |
C22 |
H10 |
51.7 |
307.9 |
C25 |
C24 |
H13 |
H14 |
120.1 |
120.5 |
N21 |
C24 |
H13 |
H14 |
239.9 |
239.4 |
C25 |
C24 |
H14 |
H13 |
239.9 |
239.5 |
N21 |
C24 |
H14 |
H13 |
120.1 |
120.6 |
O2 |
C25 |
H15 |
C24 |
238.1 |
240.2 |
O2 |
C25 |
H15 |
H16 |
119.0 |
120.2 |
H15 |
C25 |
C24 |
H13 |
314.3 |
52.0 |
H15 |
C25 |
C24 |
H14 |
74.4 |
172.6 |
O2 |
C25 |
H16 |
C24 |
121.9 |
119.7 |
O2 |
C25 |
H16 |
H15 |
241.0 |
239.8 |
H16 |
C25 |
C24 |
H13 |
194.9 |
292.0 |
H16 |
C25 |
C24 |
H14 |
315.0 |
52.5 |
H17 |
C26 |
C5 |
N6 |
88.6 |
95.2 |
H18 |
C26 |
H17 |
H19 |
120.0 |
119.9 |
H18 |
C26 |
C5 |
N6 |
208.5 |
215.3 |
H17 |
C26 |
H18 |
H19 |
240.0 |
240.1 |
H19 |
C26 |
C5 |
N6 |
328.6 |
335.2 |
H17 |
C26 |
H19 |
H18 |
119.9 |
119.9 |
C27 |
C29 |
H20 |
H21 |
120.0 |
120.0 |
C27 |
C29 |
H20 |
H22 |
240.0 |
240.0 |
H21 |
C29 |
H20 |
H22 |
120.0 |
120.0 |
C27 |
C29 |
H21 |
H20 |
240.0 |
240.0 |
C27 |
C29 |
H21 |
H22 |
120.0 |
120.0 |
H20 |
C29 |
H21 |
H22 |
240.0 |
239.9 |
C27 |
C29 |
H22 |
H20 |
120.0 |
120.0 |
C27 |
C29 |
H22 |
H21 |
240.0 |
240.0 |
H20 |
C29 |
H22 |
H21 |
120.0 |
120.0 |
C5 |
N6 |
H23 |
C7 |
180.0 |
179.8 |
C8 |
N10 |
H24 |
C11 |
180.0 |
180.0 |