PDB Chemical Component 574
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 574
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2' |
B |
1.496 |
1.434 |
| C12 |
B |
1.497 |
1.570 |
| B |
O3' |
1.515 |
1.434 |
| O2P |
P |
1.499 |
1.610 |
| O5' |
P |
1.619 |
1.610 |
| P |
O1P |
1.506 |
1.609 |
| C2 |
N1 |
1.346 |
1.320 |
| N1 |
C6 |
1.362 |
1.329 |
| C10 |
O1 |
1.434 |
1.429 |
| O1 |
HO1 |
0.950 |
0.966 |
| C2 |
N3 |
1.338 |
1.317 |
| C2 |
H2 |
1.080 |
1.079 |
| N3 |
C4 |
1.352 |
1.329 |
| C4 |
C5 |
1.387 |
1.406 |
| C4 |
N9 |
1.333 |
1.371 |
| C6 |
C5 |
1.385 |
1.405 |
| C5 |
N7 |
1.341 |
1.355 |
| C6 |
N6 |
1.357 |
1.383 |
| N6 |
HN6 |
1.000 |
0.971 |
| N6 |
HN6A |
1.000 |
0.971 |
| N7 |
C8 |
1.348 |
1.301 |
| N9 |
C8 |
1.352 |
1.363 |
| C8 |
H8 |
1.079 |
1.080 |
| C1' |
N9 |
1.492 |
1.465 |
| C1' |
O4' |
1.395 |
1.446 |
| C1' |
C2' |
1.539 |
1.544 |
| C1' |
H1' |
1.100 |
1.089 |
| C11 |
C10 |
1.486 |
1.508 |
| C17 |
C10 |
1.541 |
1.530 |
| C10 |
H10 |
1.100 |
1.090 |
| C13 |
C11 |
1.400 |
1.380 |
| C12 |
C11 |
1.377 |
1.394 |
| C16 |
C12 |
1.390 |
1.394 |
| C14 |
C13 |
1.395 |
1.383 |
| C13 |
H13 |
1.080 |
1.080 |
| C15 |
C14 |
1.395 |
1.383 |
| C14 |
H14 |
1.081 |
1.080 |
| C15 |
C16 |
1.407 |
1.380 |
| C15 |
H15 |
1.080 |
1.080 |
| C16 |
H16 |
1.080 |
1.080 |
| N18 |
C17 |
1.459 |
1.469 |
| C17 |
H17 |
1.100 |
1.090 |
| C17 |
H17A |
1.100 |
1.089 |
| N18 |
HN18 |
1.000 |
1.008 |
| N18 |
HN1A |
1.000 |
1.009 |
| O1P |
HO1P |
0.950 |
0.967 |
| O2' |
C2' |
1.430 |
1.442 |
| C2' |
C3' |
1.515 |
1.557 |
| C2' |
H2' |
1.100 |
1.090 |
| O2P |
HO2P |
0.950 |
0.967 |
| C4' |
C3' |
1.511 |
1.544 |
| C3' |
O3' |
1.419 |
1.442 |
| C3' |
H3' |
1.100 |
1.089 |
| O4' |
C4' |
1.423 |
1.443 |
| C4' |
C5' |
1.511 |
1.530 |
| C4' |
H4' |
1.100 |
1.090 |
| O5' |
C5' |
1.414 |
1.429 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
| P |
O3P |
|
1.480 |
Bond Angles for 574
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2' |
B |
O3' |
102.1 |
104.8 |
| C12 |
B |
O3' |
119.8 |
127.6 |
| B |
O3' |
C3' |
110.7 |
104.8 |
| O2P |
P |
O3P |
|
109.5 |
| O5' |
P |
O3P |
|
109.5 |
| P |
O1P |
HO1P |
109.5 |
114.0 |
| O1P |
P |
O3P |
|
109.5 |
| C2 |
N1 |
C6 |
121.2 |
121.2 |
| N1 |
C6 |
C5 |
119.1 |
118.5 |
| N1 |
C6 |
N6 |
120.8 |
120.8 |
| C10 |
O1 |
HO1 |
109.5 |
114.0 |
| N3 |
C2 |
H2 |
120.0 |
118.8 |
| C2 |
N3 |
C4 |
121.4 |
120.7 |
| N3 |
C4 |
C5 |
119.6 |
119.0 |
| N3 |
C4 |
N9 |
132.6 |
135.0 |
| C5 |
C4 |
N9 |
107.8 |
106.0 |
| C4 |
C5 |
N7 |
108.2 |
107.1 |
| C4 |
N9 |
C8 |
107.1 |
107.5 |
| C6 |
C5 |
N7 |
133.1 |
134.7 |
| C5 |
N7 |
C8 |
106.6 |
109.5 |
| C6 |
N6 |
HN6 |
109.5 |
120.0 |
| C6 |
N6 |
HN6A |
109.5 |
120.0 |
| HN6 |
N6 |
HN6A |
109.5 |
120.0 |
| N7 |
C8 |
H8 |
124.9 |
125.1 |
| N9 |
C8 |
H8 |
124.9 |
125.0 |
| C2' |
C1' |
O4' |
105.2 |
104.9 |
| O4' |
C1' |
H1' |
111.1 |
110.3 |
| C1' |
O4' |
C4' |
111.2 |
105.3 |
| C2' |
C1' |
H1' |
109.1 |
110.5 |
| C1' |
C2' |
C3' |
104.8 |
103.9 |
| C1' |
C2' |
H2' |
110.5 |
112.8 |
| C11 |
C10 |
H10 |
113.2 |
109.5 |
| C17 |
C10 |
H10 |
112.3 |
109.5 |
| C14 |
C13 |
H13 |
120.5 |
120.0 |
| C15 |
C14 |
H14 |
119.8 |
119.9 |
| C16 |
C15 |
H15 |
119.9 |
119.9 |
| C15 |
C16 |
H16 |
120.5 |
120.1 |
| N18 |
C17 |
H17 |
109.0 |
109.4 |
| N18 |
C17 |
H17A |
109.0 |
109.5 |
| H17 |
C17 |
H17A |
109.5 |
109.4 |
| HN18 |
N18 |
HN1A |
109.5 |
111.0 |
| O2' |
C2' |
C3' |
105.0 |
104.4 |
| O2' |
C2' |
H2' |
112.1 |
113.1 |
| C3' |
C2' |
H2' |
110.9 |
112.9 |
| C2' |
C3' |
O3' |
107.2 |
104.3 |
| C2' |
C3' |
H3' |
112.1 |
113.0 |
| C4' |
C3' |
H3' |
112.1 |
113.4 |
| O3' |
C3' |
H3' |
113.7 |
112.9 |
| O4' |
C4' |
C5' |
106.9 |
110.4 |
| O4' |
C4' |
H4' |
110.4 |
110.4 |
| C5' |
C4' |
H4' |
109.1 |
110.3 |
| C4' |
C5' |
H5' |
110.5 |
109.5 |
| C4' |
C5' |
H5'A |
110.5 |
109.4 |
| O5' |
C5' |
H5' |
110.5 |
109.5 |
| O5' |
C5' |
H5'A |
110.5 |
109.5 |
| H5' |
C5' |
H5'A |
109.5 |
109.5 |
Torsion Angles for 574
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C12 |
B |
O2' |
O3' |
132.8 |
179.8 |
| O2' |
B |
O3' |
C3' |
5.5 |
319.9 |
| O2' |
B |
C12 |
O3' |
235.8 |
180.3 |
| C12 |
B |
O3' |
C3' |
234.5 |
140.1 |
| C2' |
C3' |
O3' |
B |
345.7 |
24.1 |
| B |
O3' |
C3' |
H3' |
221.2 |
261.1 |
| O5' |
P |
O2P |
O3P |
|
120.0 |
| O2P |
P |
O1P |
HO1P |
180.0 |
300.0 |
| O1P |
P |
O2P |
O3P |
|
240.0 |
| O2P |
P |
O5' |
O3P |
|
240.0 |
| O5' |
P |
O1P |
HO1P |
53.9 |
60.0 |
| O1P |
P |
O5' |
O3P |
|
120.0 |
| O2P |
P |
O1P |
O3P |
|
120.0 |
| O5' |
P |
O1P |
O3P |
|
240.0 |
| C2 |
N1 |
C6 |
C5 |
1.9 |
360.0 |
| C2 |
N1 |
C6 |
N6 |
180.8 |
180.0 |
| N1 |
C6 |
C5 |
N7 |
177.5 |
180.0 |
| N1 |
C6 |
N6 |
HN6 |
0.0 |
0.0 |
| N1 |
C6 |
N6 |
HN6A |
120.0 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
358.6 |
360.0 |
| C2 |
N3 |
C4 |
C5 |
359.7 |
360.0 |
| C2 |
N3 |
C4 |
N9 |
178.6 |
180.0 |
| H2 |
C2 |
N1 |
C6 |
178.5 |
180.0 |
| H2 |
C2 |
N3 |
C4 |
180.6 |
180.0 |
| C4 |
N3 |
C2 |
H2 |
180.6 |
180.0 |
| C5 |
C4 |
N3 |
N9 |
181.1 |
180.0 |
| N3 |
C4 |
C5 |
N7 |
181.6 |
180.0 |
| N3 |
C4 |
N9 |
C8 |
178.5 |
180.0 |
| N1 |
C6 |
C5 |
C4 |
358.4 |
0.0 |
| N3 |
C4 |
C5 |
N9 |
179.2 |
180.0 |
| C5 |
C4 |
N9 |
C8 |
357.5 |
360.0 |
| C6 |
C5 |
C4 |
N7 |
179.3 |
180.0 |
| C4 |
C5 |
N7 |
C8 |
358.7 |
0.0 |
| N3 |
C4 |
N9 |
C5 |
181.0 |
180.0 |
| N9 |
C4 |
C5 |
N7 |
2.4 |
0.0 |
| C4 |
N9 |
C8 |
H8 |
181.7 |
180.0 |
| N1 |
C6 |
C5 |
N6 |
178.9 |
180.0 |
| C6 |
C5 |
C4 |
N9 |
181.7 |
180.0 |
| C4 |
C5 |
C6 |
N7 |
180.9 |
180.0 |
| C6 |
C5 |
N7 |
C8 |
179.6 |
180.0 |
| N7 |
C5 |
C4 |
N9 |
2.4 |
0.0 |
| C5 |
N7 |
C8 |
H8 |
179.8 |
180.0 |
| N1 |
C6 |
N6 |
C5 |
181.1 |
180.0 |
| N6 |
C6 |
C5 |
N7 |
358.5 |
0.0 |
| HN6 |
N6 |
C6 |
HN6A |
240.0 |
180.0 |
| C6 |
N6 |
HN6 |
HN6A |
120.0 |
180.0 |
| C6 |
N6 |
HN6A |
HN6 |
240.0 |
180.0 |
| C4 |
N9 |
C8 |
N7 |
1.7 |
0.0 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
| N7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
| C1' |
N9 |
C8 |
H8 |
351.0 |
0.0 |
| C2' |
C1' |
O4' |
H1' |
242.1 |
241.0 |
| O4' |
C1' |
C2' |
C3' |
333.1 |
24.0 |
| O4' |
C1' |
C2' |
H2' |
213.6 |
261.4 |
| C1' |
O4' |
C4' |
C5' |
116.6 |
159.6 |
| C1' |
O4' |
C4' |
H4' |
235.1 |
281.8 |
| O4' |
C1' |
C2' |
H1' |
119.3 |
118.9 |
| C2' |
C1' |
O4' |
C4' |
20.0 |
319.3 |
| O2' |
C2' |
C1' |
C3' |
113.8 |
110.9 |
| O2' |
C2' |
C1' |
H2' |
233.3 |
233.5 |
| C3' |
C2' |
C1' |
H2' |
119.5 |
122.6 |
| C1' |
C2' |
C3' |
O3' |
136.8 |
113.8 |
| C1' |
C2' |
C3' |
H3' |
262.3 |
236.8 |
| C2' |
C1' |
H1' |
O4' |
115.6 |
115.5 |
| H1' |
C1' |
O4' |
C4' |
137.8 |
78.2 |
| H1' |
C1' |
C2' |
C3' |
213.9 |
265.1 |
| H1' |
C1' |
C2' |
H2' |
94.4 |
142.5 |
| C11 |
C10 |
O1 |
HO1 |
180.0 |
300.0 |
| C17 |
C10 |
C11 |
H10 |
126.3 |
120.0 |
| C17 |
C10 |
O1 |
HO1 |
294.5 |
60.0 |
| C11 |
C10 |
C17 |
H10 |
233.2 |
240.0 |
| H10 |
C10 |
O1 |
HO1 |
57.2 |
180.0 |
| C13 |
C11 |
C10 |
H10 |
307.4 |
144.7 |
| C11 |
C12 |
B |
O3' |
235.3 |
180.0 |
| C12 |
C11 |
C10 |
H10 |
128.4 |
325.0 |
| C16 |
C12 |
B |
O3' |
54.8 |
359.9 |
| C15 |
C14 |
C13 |
H13 |
180.7 |
180.0 |
| H14 |
C14 |
C13 |
H13 |
0.7 |
359.9 |
| C16 |
C15 |
C14 |
H14 |
179.5 |
180.3 |
| H15 |
C15 |
C14 |
H14 |
359.5 |
0.0 |
| H15 |
C15 |
C16 |
H16 |
0.6 |
0.3 |
| H16 |
C16 |
C15 |
H15 |
0.6 |
0.3 |
| N18 |
C17 |
C10 |
H10 |
184.2 |
305.0 |
| H17 |
C17 |
N18 |
H17A |
119.4 |
119.9 |
| H17 |
C17 |
C10 |
H10 |
304.5 |
65.0 |
| N18 |
C17 |
H17 |
H17A |
240.9 |
240.0 |
| H17A |
C17 |
C10 |
H10 |
63.9 |
185.0 |
| N18 |
C17 |
H17A |
H17 |
119.1 |
119.9 |
| HN18 |
N18 |
C17 |
H17 |
59.7 |
60.0 |
| HN18 |
N18 |
C17 |
H17A |
300.3 |
300.1 |
| HN1A |
N18 |
C17 |
H17 |
179.7 |
184.0 |
| HN1A |
N18 |
C17 |
H17A |
60.3 |
64.0 |
| HO1P |
O1P |
P |
O3P |
|
180.0 |
| C2' |
O2' |
B |
O3' |
6.1 |
39.9 |
| O2' |
C2' |
C1' |
O4' |
86.9 |
134.9 |
| O2' |
C2' |
C1' |
H1' |
327.7 |
16.0 |
| C1' |
C2' |
O2' |
C3' |
246.3 |
249.5 |
| C1' |
C2' |
O2' |
H2' |
125.8 |
126.3 |
| C3' |
C2' |
O2' |
H2' |
239.5 |
236.8 |
| O2' |
C2' |
C3' |
O3' |
17.4 |
359.7 |
| O2' |
C2' |
C3' |
H3' |
142.9 |
122.6 |
| B |
O3' |
C3' |
C2' |
345.7 |
24.1 |
| C3' |
C2' |
C1' |
O4' |
333.1 |
24.0 |
| C3' |
C2' |
C1' |
H1' |
213.9 |
265.1 |
| C1' |
C2' |
C3' |
H2' |
240.7 |
237.5 |
| O2' |
C2' |
C3' |
H2' |
121.3 |
123.3 |
| C4' |
C3' |
C2' |
H3' |
120.8 |
123.2 |
| O3' |
C3' |
C2' |
H3' |
234.5 |
237.1 |
| H2' |
C2' |
C1' |
O4' |
213.6 |
261.4 |
| H2' |
C2' |
C1' |
H1' |
94.4 |
142.5 |
| C1' |
C2' |
H2' |
C3' |
115.7 |
117.4 |
| O2' |
C2' |
H2' |
C3' |
243.0 |
241.6 |
| H2' |
C2' |
C3' |
O3' |
256.1 |
236.4 |
| H2' |
C2' |
C3' |
H3' |
21.5 |
359.3 |
| HO2P |
O2P |
P |
O3P |
|
60.0 |
| C1' |
O4' |
C4' |
C3' |
354.8 |
40.7 |
| C4' |
C3' |
C2' |
H2' |
142.3 |
122.5 |
| C2' |
C3' |
C4' |
H3' |
239.2 |
237.0 |
| O3' |
C3' |
C4' |
H3' |
126.0 |
126.4 |
| O3' |
C3' |
C2' |
H2' |
256.1 |
236.4 |
| C2' |
C3' |
O3' |
H3' |
124.5 |
123.0 |
| C4' |
C3' |
O3' |
H3' |
234.9 |
233.3 |
| H3' |
C3' |
C2' |
H2' |
21.5 |
359.3 |
| C2' |
C3' |
H3' |
O3' |
238.2 |
242.0 |
| C4' |
O4' |
C1' |
H1' |
137.8 |
78.2 |
| O4' |
C4' |
C3' |
H3' |
108.7 |
98.9 |
| C5' |
C4' |
O4' |
H4' |
241.4 |
237.8 |
| O4' |
C4' |
C5' |
H5' |
177.6 |
189.5 |
| O4' |
C4' |
C5' |
H5'A |
299.0 |
309.5 |
| C5' |
C4' |
C3' |
H3' |
350.4 |
340.0 |
| O4' |
C4' |
C5' |
H4' |
119.4 |
122.3 |
| O5' |
C5' |
C4' |
H5' |
240.7 |
240.0 |
| O5' |
C5' |
C4' |
H5'A |
119.3 |
120.0 |
| H5' |
C5' |
C4' |
H5'A |
238.7 |
240.0 |
| H4' |
C4' |
C3' |
H3' |
229.1 |
217.9 |
| O4' |
C4' |
H4' |
C5' |
242.8 |
237.8 |
| H4' |
C4' |
C5' |
H5' |
58.3 |
67.2 |
| H4' |
C4' |
C5' |
H5'A |
179.6 |
187.2 |
| C5' |
O5' |
P |
O3P |
|
305.0 |
| O5' |
C5' |
C4' |
H4' |
299.0 |
307.2 |
| C4' |
C5' |
O5' |
H5' |
119.4 |
120.0 |
| C4' |
C5' |
O5' |
H5'A |
240.7 |
240.0 |
| H5' |
C5' |
O5' |
H5'A |
121.3 |
120.0 |
| H5' |
C5' |
C4' |
H4' |
58.3 |
67.2 |
| C4' |
C5' |
H5' |
H5'A |
121.9 |
120.0 |
| O5' |
C5' |
H5' |
H5'A |
238.1 |
240.0 |
| H5'A |
C5' |
C4' |
H4' |
179.6 |
187.2 |
| C4' |
C5' |
H5'A |
H5' |
238.1 |
240.0 |
| O5' |
C5' |
H5'A |
H5' |
121.9 |
120.0 |
| O3P |
P |
O1P |
HO1P |
|
180.0 |