PDB Chemical Component 56H
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 56H
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C12 |
C8 |
1.529 |
1.530 |
C10 |
C8 |
1.532 |
1.530 |
C6 |
C5 |
1.390 |
1.343 |
C6 |
N3 |
1.376 |
1.345 |
C8 |
C5 |
1.526 |
1.507 |
C8 |
C11 |
1.529 |
1.530 |
C5 |
O2 |
1.377 |
1.347 |
N3 |
C1 |
1.345 |
1.303 |
C1 |
O2 |
1.364 |
1.340 |
C1 |
C4 |
1.471 |
1.508 |
C4 |
S7 |
1.799 |
1.814 |
S7 |
C9 |
1.755 |
1.762 |
C9 |
S13 |
1.743 |
1.762 |
C9 |
C14 |
1.351 |
1.340 |
S13 |
C15 |
1.739 |
1.761 |
C22 |
C24 |
1.517 |
1.530 |
C22 |
C19 |
1.540 |
1.531 |
O20 |
C18 |
1.227 |
1.213 |
C14 |
N16 |
1.375 |
1.321 |
C24 |
N25 |
1.480 |
1.469 |
C15 |
N16 |
1.306 |
1.297 |
C15 |
N17 |
1.377 |
1.393 |
C18 |
N17 |
1.363 |
1.347 |
C18 |
C19 |
1.498 |
1.507 |
C19 |
C21 |
1.539 |
1.531 |
N25 |
C23 |
1.471 |
1.468 |
C21 |
C23 |
1.516 |
1.531 |
C19 |
H1 |
1.100 |
1.090 |
C21 |
H2 |
1.100 |
1.090 |
C21 |
H3 |
1.100 |
1.090 |
C22 |
H4 |
1.100 |
1.091 |
C22 |
H5 |
1.100 |
1.090 |
C23 |
H6 |
1.100 |
1.090 |
C23 |
H7 |
1.100 |
1.089 |
C24 |
H8 |
1.100 |
1.091 |
C24 |
H9 |
1.100 |
1.091 |
C11 |
H10 |
1.100 |
1.090 |
C11 |
H11 |
1.100 |
1.091 |
C11 |
H12 |
1.100 |
1.089 |
C12 |
H13 |
1.100 |
1.090 |
C12 |
H14 |
1.100 |
1.091 |
C12 |
H15 |
1.100 |
1.091 |
C4 |
H16 |
1.100 |
1.090 |
C4 |
H17 |
1.100 |
1.090 |
C6 |
H18 |
1.080 |
1.079 |
C10 |
H19 |
1.100 |
1.090 |
C10 |
H20 |
1.100 |
1.090 |
C10 |
H21 |
1.100 |
1.091 |
C14 |
H22 |
1.080 |
1.081 |
N17 |
H23 |
1.000 |
0.970 |
N25 |
H24 |
1.000 |
1.009 |
Bond Angles for 56H
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C12 |
C8 |
C5 |
110.7 |
109.5 |
C8 |
C12 |
H13 |
109.5 |
109.5 |
C8 |
C12 |
H14 |
109.4 |
109.5 |
C8 |
C12 |
H15 |
109.5 |
109.5 |
C8 |
C11 |
H10 |
109.5 |
109.5 |
C8 |
C11 |
H11 |
109.4 |
109.5 |
C8 |
C11 |
H12 |
109.4 |
109.5 |
N3 |
C1 |
C4 |
132.8 |
125.6 |
O2 |
C1 |
C4 |
115.0 |
125.6 |
C1 |
C4 |
S7 |
106.3 |
109.4 |
C1 |
C4 |
H16 |
110.3 |
109.5 |
C1 |
C4 |
H17 |
110.3 |
109.5 |
C4 |
S7 |
C9 |
108.4 |
103.0 |
S7 |
C4 |
H16 |
110.3 |
109.5 |
S7 |
C4 |
H17 |
110.3 |
109.5 |
S7 |
C9 |
S13 |
119.9 |
125.9 |
S7 |
C9 |
C14 |
130.2 |
125.9 |
S13 |
C9 |
C14 |
109.3 |
108.2 |
C9 |
C14 |
N16 |
117.0 |
115.6 |
C9 |
C14 |
H22 |
121.5 |
122.2 |
S13 |
C15 |
N16 |
115.5 |
109.3 |
S13 |
C15 |
N17 |
124.0 |
125.4 |
C22 |
C24 |
N25 |
107.7 |
109.5 |
C24 |
C22 |
H4 |
109.1 |
109.5 |
C24 |
C22 |
H5 |
109.1 |
109.5 |
C22 |
C24 |
H8 |
109.9 |
109.5 |
C22 |
C24 |
H9 |
109.9 |
109.5 |
C22 |
C19 |
H1 |
108.4 |
109.6 |
C15 |
N16 |
C14 |
109.7 |
117.0 |
N16 |
C14 |
H22 |
121.5 |
122.2 |
N25 |
C24 |
H8 |
109.9 |
109.5 |
N25 |
C24 |
H9 |
109.9 |
109.5 |
C24 |
N25 |
H24 |
109.2 |
111.0 |
N16 |
C15 |
N17 |
120.5 |
125.4 |
C18 |
N17 |
C15 |
124.8 |
120.0 |
C15 |
N17 |
H23 |
117.6 |
120.0 |
C19 |
C18 |
N17 |
115.3 |
120.0 |
C18 |
N17 |
H23 |
117.6 |
120.0 |
C18 |
C19 |
C21 |
110.3 |
109.6 |
C18 |
C19 |
H1 |
108.9 |
109.5 |
C19 |
C21 |
C23 |
110.7 |
109.3 |
C21 |
C19 |
H1 |
108.4 |
109.5 |
C19 |
C21 |
H2 |
109.1 |
109.6 |
C19 |
C21 |
H3 |
109.2 |
109.5 |
N25 |
C23 |
H6 |
109.4 |
109.4 |
N25 |
C23 |
H7 |
109.4 |
109.5 |
C23 |
C21 |
H2 |
109.2 |
109.5 |
C23 |
C21 |
H3 |
109.1 |
109.5 |
C21 |
C23 |
H6 |
109.5 |
109.4 |
C21 |
C23 |
H7 |
109.5 |
109.5 |
H2 |
C21 |
H3 |
109.5 |
109.5 |
H4 |
C22 |
H5 |
109.5 |
109.6 |
H6 |
C23 |
H7 |
109.5 |
109.5 |
H8 |
C24 |
H9 |
109.5 |
109.4 |
H10 |
C11 |
H11 |
109.5 |
109.4 |
H10 |
C11 |
H12 |
109.5 |
109.5 |
H11 |
C11 |
H12 |
109.5 |
109.5 |
H13 |
C12 |
H14 |
109.5 |
109.5 |
H13 |
C12 |
H15 |
109.5 |
109.4 |
H14 |
C12 |
H15 |
109.5 |
109.4 |
H16 |
C4 |
H17 |
109.4 |
109.5 |
H19 |
C10 |
H20 |
109.5 |
109.5 |
H19 |
C10 |
H21 |
109.4 |
109.5 |
H20 |
C10 |
H21 |
109.5 |
109.5 |
Torsion Angles for 56H
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C12 |
C8 |
C11 |
H10 |
180.0 |
60.0 |
C12 |
C8 |
C11 |
H11 |
300.0 |
180.0 |
C12 |
C8 |
C11 |
H12 |
60.0 |
299.9 |
H13 |
C12 |
C8 |
H14 |
240.0 |
239.9 |
H13 |
C12 |
C8 |
H15 |
120.0 |
119.9 |
H14 |
C12 |
C8 |
H15 |
240.0 |
240.0 |
C10 |
C8 |
C12 |
H13 |
180.0 |
299.9 |
C10 |
C8 |
C12 |
H14 |
300.0 |
60.0 |
C10 |
C8 |
C12 |
H15 |
60.0 |
180.0 |
C10 |
C8 |
C11 |
H10 |
297.6 |
300.0 |
C10 |
C8 |
C11 |
H11 |
57.6 |
60.0 |
C10 |
C8 |
C11 |
H12 |
177.6 |
180.0 |
C12 |
C8 |
C5 |
C6 |
339.4 |
60.5 |
C5 |
C8 |
C12 |
H13 |
59.7 |
60.0 |
C5 |
C8 |
C12 |
H14 |
179.8 |
180.0 |
C5 |
C8 |
C12 |
H15 |
299.8 |
300.0 |
C5 |
C8 |
C11 |
H10 |
58.5 |
180.0 |
C5 |
C8 |
C11 |
H11 |
178.5 |
300.0 |
C5 |
C8 |
C11 |
H12 |
298.5 |
59.9 |
H10 |
C11 |
C8 |
H11 |
240.0 |
240.0 |
H10 |
C11 |
C8 |
H12 |
120.0 |
120.1 |
H11 |
C11 |
C8 |
H12 |
240.0 |
240.0 |
C12 |
C8 |
C5 |
O2 |
155.5 |
240.0 |
O2 |
C1 |
N3 |
C4 |
182.4 |
179.8 |
N3 |
C1 |
C4 |
S7 |
258.2 |
89.8 |
N3 |
C1 |
C4 |
H16 |
17.7 |
209.7 |
N3 |
C1 |
C4 |
H17 |
138.7 |
329.7 |
N3 |
C1 |
O2 |
C4 |
178.1 |
180.2 |
O2 |
C1 |
C4 |
S7 |
75.8 |
270.0 |
O2 |
C1 |
C4 |
H16 |
195.3 |
29.9 |
O2 |
C1 |
C4 |
H17 |
316.2 |
149.9 |
C1 |
C4 |
S7 |
C9 |
261.8 |
180.0 |
S7 |
C4 |
C1 |
H16 |
240.5 |
240.0 |
S7 |
C4 |
C1 |
H17 |
119.5 |
120.0 |
H16 |
C4 |
C1 |
H17 |
239.0 |
240.0 |
C1 |
C4 |
S7 |
H16 |
119.5 |
120.0 |
C1 |
C4 |
S7 |
H17 |
240.5 |
240.0 |
C4 |
S7 |
C9 |
S13 |
85.9 |
0.0 |
C4 |
S7 |
C9 |
C14 |
255.8 |
179.7 |
H16 |
C4 |
S7 |
H17 |
121.0 |
120.0 |
C9 |
S7 |
C4 |
H16 |
142.3 |
60.0 |
C9 |
S7 |
C4 |
H17 |
21.3 |
300.0 |
S13 |
C9 |
S7 |
C14 |
190.1 |
180.3 |
S7 |
C9 |
C14 |
N16 |
191.7 |
179.8 |
S7 |
C9 |
C14 |
H22 |
11.6 |
0.0 |
S7 |
C9 |
S13 |
C14 |
171.9 |
179.7 |
S13 |
C9 |
C14 |
N16 |
2.4 |
359.6 |
S13 |
C9 |
C14 |
H22 |
182.4 |
179.8 |
C9 |
S13 |
C15 |
N16 |
1.0 |
360.0 |
C9 |
S13 |
C15 |
N17 |
179.1 |
179.7 |
S7 |
C9 |
C14 |
S13 |
189.2 |
180.3 |
C15 |
N16 |
C14 |
C9 |
358.3 |
0.4 |
N16 |
C14 |
C9 |
H22 |
180.0 |
179.8 |
S13 |
C15 |
N16 |
C14 |
0.1 |
359.8 |
N16 |
C15 |
S13 |
N17 |
181.9 |
180.2 |
C18 |
N17 |
C15 |
S13 |
356.1 |
180.2 |
S13 |
C15 |
N17 |
H23 |
176.1 |
0.3 |
C24 |
C22 |
C19 |
H1 |
294.9 |
297.7 |
N25 |
C24 |
C22 |
H8 |
240.3 |
240.0 |
N25 |
C24 |
C22 |
H9 |
119.7 |
120.1 |
C22 |
C24 |
N25 |
H24 |
185.3 |
185.8 |
H4 |
C22 |
C24 |
H5 |
240.4 |
120.1 |
H8 |
C24 |
C22 |
H9 |
239.5 |
240.1 |
C22 |
C19 |
C18 |
N17 |
139.6 |
60.4 |
C18 |
C19 |
C22 |
H1 |
240.8 |
239.8 |
C22 |
C19 |
C21 |
C23 |
308.5 |
302.3 |
C21 |
C19 |
C22 |
H1 |
118.6 |
119.9 |
C22 |
C19 |
C21 |
H2 |
68.7 |
62.3 |
C22 |
C19 |
C21 |
H3 |
188.3 |
182.4 |
O20 |
C18 |
N17 |
H23 |
181.8 |
180.3 |
O20 |
C18 |
C19 |
H1 |
202.2 |
119.8 |
C9 |
C14 |
N16 |
H22 |
180.0 |
180.2 |
C14 |
N16 |
C15 |
N17 |
182.0 |
180.0 |
N25 |
C24 |
C22 |
H4 |
61.0 |
180.9 |
N25 |
C24 |
C22 |
H5 |
180.5 |
60.8 |
C22 |
C24 |
N25 |
H8 |
119.7 |
120.0 |
C22 |
C24 |
N25 |
H9 |
240.3 |
240.0 |
C24 |
N25 |
C23 |
H6 |
55.7 |
178.3 |
C24 |
N25 |
C23 |
H7 |
175.7 |
58.3 |
H8 |
C24 |
N25 |
H9 |
120.5 |
119.9 |
C9 |
C14 |
N16 |
C15 |
358.3 |
0.4 |
S13 |
C15 |
N16 |
N17 |
178.1 |
179.8 |
C15 |
N16 |
C14 |
H22 |
178.3 |
180.2 |
C18 |
N17 |
C15 |
N16 |
174.1 |
359.9 |
N16 |
C15 |
N17 |
H23 |
354.1 |
180.0 |
S13 |
C15 |
N17 |
N16 |
182.0 |
180.3 |
N17 |
C15 |
N16 |
C14 |
182.0 |
180.0 |
C19 |
C18 |
N17 |
C15 |
183.3 |
180.0 |
C18 |
N17 |
C15 |
H23 |
180.0 |
179.9 |
S13 |
C15 |
N17 |
C18 |
356.1 |
180.2 |
N16 |
C15 |
N17 |
C18 |
174.1 |
359.9 |
C15 |
N17 |
C18 |
H23 |
180.0 |
180.1 |
N17 |
C18 |
C19 |
C21 |
261.9 |
180.0 |
N17 |
C18 |
C19 |
H1 |
20.7 |
300.2 |
C22 |
C19 |
C18 |
H1 |
118.9 |
120.2 |
C19 |
C18 |
N17 |
H23 |
3.4 |
359.9 |
C18 |
C19 |
C21 |
C23 |
186.1 |
182.4 |
C21 |
C19 |
C18 |
H1 |
241.2 |
239.8 |
C18 |
C19 |
C21 |
H2 |
306.3 |
302.5 |
C18 |
C19 |
C21 |
H3 |
65.9 |
62.6 |
C22 |
C19 |
C21 |
H1 |
241.5 |
240.0 |
C21 |
C19 |
C18 |
N17 |
261.9 |
180.0 |
C18 |
C19 |
C21 |
H1 |
119.1 |
120.2 |
C23 |
C21 |
C19 |
H2 |
239.8 |
240.0 |
C23 |
C21 |
C19 |
H3 |
120.2 |
119.9 |
C19 |
C21 |
C23 |
H6 |
296.6 |
179.2 |
C19 |
C21 |
C23 |
H7 |
176.6 |
299.2 |
H2 |
C21 |
C19 |
H3 |
240.4 |
239.9 |
C22 |
C24 |
N25 |
C23 |
65.1 |
61.8 |
N25 |
C23 |
C21 |
H2 |
296.4 |
299.2 |
N25 |
C23 |
C21 |
H3 |
176.8 |
179.1 |
C21 |
C23 |
N25 |
H6 |
240.0 |
119.9 |
C21 |
C23 |
N25 |
H7 |
120.0 |
240.0 |
H6 |
C23 |
N25 |
H7 |
240.1 |
120.0 |
C23 |
C21 |
C19 |
H1 |
67.0 |
62.3 |
C19 |
C21 |
C23 |
H2 |
120.2 |
120.0 |
C19 |
C21 |
C23 |
H3 |
239.8 |
240.1 |
N25 |
C23 |
C21 |
H6 |
120.0 |
240.1 |
N25 |
C23 |
C21 |
H7 |
240.0 |
120.0 |
H2 |
C21 |
C23 |
H3 |
119.6 |
120.1 |
H6 |
C23 |
C21 |
H7 |
120.0 |
240.0 |
H1 |
C19 |
C18 |
N17 |
20.7 |
300.2 |
C18 |
C19 |
H1 |
C21 |
240.0 |
239.8 |
H1 |
C19 |
C21 |
C23 |
67.0 |
62.3 |
H1 |
C19 |
C21 |
H2 |
187.2 |
182.3 |
H1 |
C19 |
C21 |
H3 |
306.8 |
302.4 |
C19 |
C21 |
H2 |
C23 |
238.8 |
240.1 |
H2 |
C21 |
C19 |
H1 |
187.2 |
182.3 |
C19 |
C21 |
H2 |
H3 |
119.4 |
120.1 |
C23 |
C21 |
H2 |
H3 |
240.6 |
240.0 |
H2 |
C21 |
C23 |
H6 |
176.4 |
59.2 |
H2 |
C21 |
C23 |
H7 |
56.4 |
179.2 |
C19 |
C21 |
H3 |
C23 |
121.1 |
119.8 |
H3 |
C21 |
C19 |
H1 |
306.8 |
302.4 |
C19 |
C21 |
H3 |
H2 |
240.6 |
239.9 |
C23 |
C21 |
H3 |
H2 |
119.4 |
120.1 |
H3 |
C21 |
C23 |
H6 |
56.8 |
299.1 |
H3 |
C21 |
C23 |
H7 |
296.8 |
59.1 |
H4 |
C22 |
C24 |
N25 |
61.0 |
180.9 |
C24 |
C22 |
H4 |
H5 |
119.3 |
239.9 |
H4 |
C22 |
C24 |
H8 |
180.7 |
300.9 |
H4 |
C22 |
C24 |
H9 |
301.2 |
60.8 |
H4 |
C22 |
C19 |
H1 |
174.8 |
57.6 |
H5 |
C22 |
C24 |
N25 |
180.5 |
60.8 |
C24 |
C22 |
H5 |
H4 |
240.7 |
120.1 |
H5 |
C22 |
C24 |
H8 |
300.3 |
180.8 |
H5 |
C22 |
C24 |
H9 |
60.8 |
300.7 |
H5 |
C22 |
C19 |
H1 |
55.2 |
177.8 |
N25 |
C23 |
H6 |
H7 |
119.9 |
240.0 |
H6 |
C23 |
C21 |
H2 |
176.4 |
59.2 |
H6 |
C23 |
C21 |
H3 |
56.8 |
299.1 |
C21 |
C23 |
H6 |
H7 |
240.0 |
120.0 |
N25 |
C23 |
H7 |
H6 |
240.1 |
120.0 |
H7 |
C23 |
C21 |
H2 |
56.4 |
179.2 |
H7 |
C23 |
C21 |
H3 |
296.8 |
59.1 |
C21 |
C23 |
H7 |
H6 |
120.0 |
240.0 |
C22 |
C24 |
H8 |
N25 |
241.6 |
239.9 |
H8 |
C24 |
C22 |
H4 |
180.7 |
300.9 |
H8 |
C24 |
C22 |
H5 |
300.3 |
180.8 |
C22 |
C24 |
H8 |
H9 |
120.8 |
119.9 |
N25 |
C24 |
H8 |
H9 |
239.2 |
240.0 |
H8 |
C24 |
N25 |
H24 |
65.6 |
65.8 |
C22 |
C24 |
H9 |
N25 |
118.4 |
120.1 |
H9 |
C24 |
C22 |
H4 |
301.2 |
60.8 |
H9 |
C24 |
C22 |
H5 |
60.8 |
300.7 |
C22 |
C24 |
H9 |
H8 |
239.2 |
240.1 |
N25 |
C24 |
H9 |
H8 |
120.8 |
120.0 |
H9 |
C24 |
N25 |
H24 |
305.0 |
305.9 |
C8 |
C11 |
H10 |
H11 |
120.0 |
120.0 |
C8 |
C11 |
H10 |
H12 |
240.0 |
239.9 |
H11 |
C11 |
H10 |
H12 |
120.0 |
120.0 |
C8 |
C11 |
H11 |
H10 |
240.0 |
240.0 |
C8 |
C11 |
H11 |
H12 |
119.9 |
120.0 |
H10 |
C11 |
H11 |
H12 |
240.0 |
240.0 |
C8 |
C11 |
H12 |
H10 |
120.0 |
120.1 |
C8 |
C11 |
H12 |
H11 |
240.0 |
240.0 |
H10 |
C11 |
H12 |
H11 |
120.0 |
120.0 |
H13 |
C12 |
C8 |
C5 |
59.7 |
60.0 |
C8 |
C12 |
H13 |
H14 |
120.0 |
120.1 |
C8 |
C12 |
H13 |
H15 |
240.0 |
240.0 |
H14 |
C12 |
H13 |
H15 |
120.0 |
119.9 |
H14 |
C12 |
C8 |
C5 |
179.8 |
180.0 |
C8 |
C12 |
H14 |
H13 |
240.0 |
239.9 |
C8 |
C12 |
H14 |
H15 |
120.0 |
120.0 |
H13 |
C12 |
H14 |
H15 |
240.0 |
240.1 |
H15 |
C12 |
C8 |
C5 |
299.8 |
300.0 |
C8 |
C12 |
H15 |
H13 |
120.0 |
120.0 |
C8 |
C12 |
H15 |
H14 |
240.0 |
239.9 |
H13 |
C12 |
H15 |
H14 |
120.0 |
119.9 |
C1 |
C4 |
H16 |
S7 |
242.9 |
240.0 |
C1 |
C4 |
H16 |
H17 |
121.4 |
120.0 |
H16 |
C4 |
S7 |
C9 |
142.3 |
60.0 |
S7 |
C4 |
H16 |
H17 |
238.5 |
240.0 |
C1 |
C4 |
H17 |
S7 |
117.1 |
120.0 |
C1 |
C4 |
H17 |
H16 |
238.6 |
240.0 |
H17 |
C4 |
S7 |
C9 |
21.3 |
300.0 |
S7 |
C4 |
H17 |
H16 |
121.5 |
120.0 |
H20 |
C10 |
H19 |
H21 |
120.0 |
120.0 |
H19 |
C10 |
H20 |
H21 |
240.0 |
240.0 |
H19 |
C10 |
H21 |
H20 |
120.0 |
120.0 |
C9 |
C14 |
H22 |
N16 |
180.0 |
179.8 |
C18 |
N17 |
H23 |
C15 |
180.0 |
180.1 |
H24 |
N25 |
C24 |
H8 |
65.6 |
65.8 |
H24 |
N25 |
C24 |
H9 |
305.0 |
305.9 |
H24 |
N25 |
C23 |
H6 |
295.5 |
54.2 |
H24 |
N25 |
C23 |
H7 |
55.5 |
294.2 |