PDB Chemical Component 56H

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 56H

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C12 C8 1.529 1.530
C10 C8 1.532 1.530
C6 C5 1.390 1.343
C6 N3 1.376 1.345
C8 C5 1.526 1.507
C8 C11 1.529 1.530
C5 O2 1.377 1.347
N3 C1 1.345 1.303
C1 O2 1.364 1.340
C1 C4 1.471 1.508
C4 S7 1.799 1.814
S7 C9 1.755 1.762
C9 S13 1.743 1.762
C9 C14 1.351 1.340
S13 C15 1.739 1.761
C22 C24 1.517 1.530
C22 C19 1.540 1.531
O20 C18 1.227 1.213
C14 N16 1.375 1.321
C24 N25 1.480 1.469
C15 N16 1.306 1.297
C15 N17 1.377 1.393
C18 N17 1.363 1.347
C18 C19 1.498 1.507
C19 C21 1.539 1.531
N25 C23 1.471 1.468
C21 C23 1.516 1.531
C19 H1 1.100 1.090
C21 H2 1.100 1.090
C21 H3 1.100 1.090
C22 H4 1.100 1.091
C22 H5 1.100 1.090
C23 H6 1.100 1.090
C23 H7 1.100 1.089
C24 H8 1.100 1.091
C24 H9 1.100 1.091
C11 H10 1.100 1.090
C11 H11 1.100 1.091
C11 H12 1.100 1.089
C12 H13 1.100 1.090
C12 H14 1.100 1.091
C12 H15 1.100 1.091
C4 H16 1.100 1.090
C4 H17 1.100 1.090
C6 H18 1.080 1.079
C10 H19 1.100 1.090
C10 H20 1.100 1.090
C10 H21 1.100 1.091
C14 H22 1.080 1.081
N17 H23 1.000 0.970
N25 H24 1.000 1.009

Bond Angles for 56H

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C12 C8 C5 110.7 109.5
C8 C12 H13 109.5 109.5
C8 C12 H14 109.4 109.5
C8 C12 H15 109.5 109.5
C8 C11 H10 109.5 109.5
C8 C11 H11 109.4 109.5
C8 C11 H12 109.4 109.5
N3 C1 C4 132.8 125.6
O2 C1 C4 115.0 125.6
C1 C4 S7 106.3 109.4
C1 C4 H16 110.3 109.5
C1 C4 H17 110.3 109.5
C4 S7 C9 108.4 103.0
S7 C4 H16 110.3 109.5
S7 C4 H17 110.3 109.5
S7 C9 S13 119.9 125.9
S7 C9 C14 130.2 125.9
S13 C9 C14 109.3 108.2
C9 C14 N16 117.0 115.6
C9 C14 H22 121.5 122.2
S13 C15 N16 115.5 109.3
S13 C15 N17 124.0 125.4
C22 C24 N25 107.7 109.5
C24 C22 H4 109.1 109.5
C24 C22 H5 109.1 109.5
C22 C24 H8 109.9 109.5
C22 C24 H9 109.9 109.5
C22 C19 H1 108.4 109.6
C15 N16 C14 109.7 117.0
N16 C14 H22 121.5 122.2
N25 C24 H8 109.9 109.5
N25 C24 H9 109.9 109.5
C24 N25 H24 109.2 111.0
N16 C15 N17 120.5 125.4
C18 N17 C15 124.8 120.0
C15 N17 H23 117.6 120.0
C19 C18 N17 115.3 120.0
C18 N17 H23 117.6 120.0
C18 C19 C21 110.3 109.6
C18 C19 H1 108.9 109.5
C19 C21 C23 110.7 109.3
C21 C19 H1 108.4 109.5
C19 C21 H2 109.1 109.6
C19 C21 H3 109.2 109.5
N25 C23 H6 109.4 109.4
N25 C23 H7 109.4 109.5
C23 C21 H2 109.2 109.5
C23 C21 H3 109.1 109.5
C21 C23 H6 109.5 109.4
C21 C23 H7 109.5 109.5
H2 C21 H3 109.5 109.5
H4 C22 H5 109.5 109.6
H6 C23 H7 109.5 109.5
H8 C24 H9 109.5 109.4
H10 C11 H11 109.5 109.4
H10 C11 H12 109.5 109.5
H11 C11 H12 109.5 109.5
H13 C12 H14 109.5 109.5
H13 C12 H15 109.5 109.4
H14 C12 H15 109.5 109.4
H16 C4 H17 109.4 109.5
H19 C10 H20 109.5 109.5
H19 C10 H21 109.4 109.5
H20 C10 H21 109.5 109.5

Torsion Angles for 56H

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C12 C8 C11 H10 180.0 60.0
C12 C8 C11 H11 300.0 180.0
C12 C8 C11 H12 60.0 299.9
H13 C12 C8 H14 240.0 239.9
H13 C12 C8 H15 120.0 119.9
H14 C12 C8 H15 240.0 240.0
C10 C8 C12 H13 180.0 299.9
C10 C8 C12 H14 300.0 60.0
C10 C8 C12 H15 60.0 180.0
C10 C8 C11 H10 297.6 300.0
C10 C8 C11 H11 57.6 60.0
C10 C8 C11 H12 177.6 180.0
C12 C8 C5 C6 339.4 60.5
C5 C8 C12 H13 59.7 60.0
C5 C8 C12 H14 179.8 180.0
C5 C8 C12 H15 299.8 300.0
C5 C8 C11 H10 58.5 180.0
C5 C8 C11 H11 178.5 300.0
C5 C8 C11 H12 298.5 59.9
H10 C11 C8 H11 240.0 240.0
H10 C11 C8 H12 120.0 120.1
H11 C11 C8 H12 240.0 240.0
C12 C8 C5 O2 155.5 240.0
O2 C1 N3 C4 182.4 179.8
N3 C1 C4 S7 258.2 89.8
N3 C1 C4 H16 17.7 209.7
N3 C1 C4 H17 138.7 329.7
N3 C1 O2 C4 178.1 180.2
O2 C1 C4 S7 75.8 270.0
O2 C1 C4 H16 195.3 29.9
O2 C1 C4 H17 316.2 149.9
C1 C4 S7 C9 261.8 180.0
S7 C4 C1 H16 240.5 240.0
S7 C4 C1 H17 119.5 120.0
H16 C4 C1 H17 239.0 240.0
C1 C4 S7 H16 119.5 120.0
C1 C4 S7 H17 240.5 240.0
C4 S7 C9 S13 85.9 0.0
C4 S7 C9 C14 255.8 179.7
H16 C4 S7 H17 121.0 120.0
C9 S7 C4 H16 142.3 60.0
C9 S7 C4 H17 21.3 300.0
S13 C9 S7 C14 190.1 180.3
S7 C9 C14 N16 191.7 179.8
S7 C9 C14 H22 11.6 0.0
S7 C9 S13 C14 171.9 179.7
S13 C9 C14 N16 2.4 359.6
S13 C9 C14 H22 182.4 179.8
C9 S13 C15 N16 1.0 360.0
C9 S13 C15 N17 179.1 179.7
S7 C9 C14 S13 189.2 180.3
C15 N16 C14 C9 358.3 0.4
N16 C14 C9 H22 180.0 179.8
S13 C15 N16 C14 0.1 359.8
N16 C15 S13 N17 181.9 180.2
C18 N17 C15 S13 356.1 180.2
S13 C15 N17 H23 176.1 0.3
C24 C22 C19 H1 294.9 297.7
N25 C24 C22 H8 240.3 240.0
N25 C24 C22 H9 119.7 120.1
C22 C24 N25 H24 185.3 185.8
H4 C22 C24 H5 240.4 120.1
H8 C24 C22 H9 239.5 240.1
C22 C19 C18 N17 139.6 60.4
C18 C19 C22 H1 240.8 239.8
C22 C19 C21 C23 308.5 302.3
C21 C19 C22 H1 118.6 119.9
C22 C19 C21 H2 68.7 62.3
C22 C19 C21 H3 188.3 182.4
O20 C18 N17 H23 181.8 180.3
O20 C18 C19 H1 202.2 119.8
C9 C14 N16 H22 180.0 180.2
C14 N16 C15 N17 182.0 180.0
N25 C24 C22 H4 61.0 180.9
N25 C24 C22 H5 180.5 60.8
C22 C24 N25 H8 119.7 120.0
C22 C24 N25 H9 240.3 240.0
C24 N25 C23 H6 55.7 178.3
C24 N25 C23 H7 175.7 58.3
H8 C24 N25 H9 120.5 119.9
C9 C14 N16 C15 358.3 0.4
S13 C15 N16 N17 178.1 179.8
C15 N16 C14 H22 178.3 180.2
C18 N17 C15 N16 174.1 359.9
N16 C15 N17 H23 354.1 180.0
S13 C15 N17 N16 182.0 180.3
N17 C15 N16 C14 182.0 180.0
C19 C18 N17 C15 183.3 180.0
C18 N17 C15 H23 180.0 179.9
S13 C15 N17 C18 356.1 180.2
N16 C15 N17 C18 174.1 359.9
C15 N17 C18 H23 180.0 180.1
N17 C18 C19 C21 261.9 180.0
N17 C18 C19 H1 20.7 300.2
C22 C19 C18 H1 118.9 120.2
C19 C18 N17 H23 3.4 359.9
C18 C19 C21 C23 186.1 182.4
C21 C19 C18 H1 241.2 239.8
C18 C19 C21 H2 306.3 302.5
C18 C19 C21 H3 65.9 62.6
C22 C19 C21 H1 241.5 240.0
C21 C19 C18 N17 261.9 180.0
C18 C19 C21 H1 119.1 120.2
C23 C21 C19 H2 239.8 240.0
C23 C21 C19 H3 120.2 119.9
C19 C21 C23 H6 296.6 179.2
C19 C21 C23 H7 176.6 299.2
H2 C21 C19 H3 240.4 239.9
C22 C24 N25 C23 65.1 61.8
N25 C23 C21 H2 296.4 299.2
N25 C23 C21 H3 176.8 179.1
C21 C23 N25 H6 240.0 119.9
C21 C23 N25 H7 120.0 240.0
H6 C23 N25 H7 240.1 120.0
C23 C21 C19 H1 67.0 62.3
C19 C21 C23 H2 120.2 120.0
C19 C21 C23 H3 239.8 240.1
N25 C23 C21 H6 120.0 240.1
N25 C23 C21 H7 240.0 120.0
H2 C21 C23 H3 119.6 120.1
H6 C23 C21 H7 120.0 240.0
H1 C19 C18 N17 20.7 300.2
C18 C19 H1 C21 240.0 239.8
H1 C19 C21 C23 67.0 62.3
H1 C19 C21 H2 187.2 182.3
H1 C19 C21 H3 306.8 302.4
C19 C21 H2 C23 238.8 240.1
H2 C21 C19 H1 187.2 182.3
C19 C21 H2 H3 119.4 120.1
C23 C21 H2 H3 240.6 240.0
H2 C21 C23 H6 176.4 59.2
H2 C21 C23 H7 56.4 179.2
C19 C21 H3 C23 121.1 119.8
H3 C21 C19 H1 306.8 302.4
C19 C21 H3 H2 240.6 239.9
C23 C21 H3 H2 119.4 120.1
H3 C21 C23 H6 56.8 299.1
H3 C21 C23 H7 296.8 59.1
H4 C22 C24 N25 61.0 180.9
C24 C22 H4 H5 119.3 239.9
H4 C22 C24 H8 180.7 300.9
H4 C22 C24 H9 301.2 60.8
H4 C22 C19 H1 174.8 57.6
H5 C22 C24 N25 180.5 60.8
C24 C22 H5 H4 240.7 120.1
H5 C22 C24 H8 300.3 180.8
H5 C22 C24 H9 60.8 300.7
H5 C22 C19 H1 55.2 177.8
N25 C23 H6 H7 119.9 240.0
H6 C23 C21 H2 176.4 59.2
H6 C23 C21 H3 56.8 299.1
C21 C23 H6 H7 240.0 120.0
N25 C23 H7 H6 240.1 120.0
H7 C23 C21 H2 56.4 179.2
H7 C23 C21 H3 296.8 59.1
C21 C23 H7 H6 120.0 240.0
C22 C24 H8 N25 241.6 239.9
H8 C24 C22 H4 180.7 300.9
H8 C24 C22 H5 300.3 180.8
C22 C24 H8 H9 120.8 119.9
N25 C24 H8 H9 239.2 240.0
H8 C24 N25 H24 65.6 65.8
C22 C24 H9 N25 118.4 120.1
H9 C24 C22 H4 301.2 60.8
H9 C24 C22 H5 60.8 300.7
C22 C24 H9 H8 239.2 240.1
N25 C24 H9 H8 120.8 120.0
H9 C24 N25 H24 305.0 305.9
C8 C11 H10 H11 120.0 120.0
C8 C11 H10 H12 240.0 239.9
H11 C11 H10 H12 120.0 120.0
C8 C11 H11 H10 240.0 240.0
C8 C11 H11 H12 119.9 120.0
H10 C11 H11 H12 240.0 240.0
C8 C11 H12 H10 120.0 120.1
C8 C11 H12 H11 240.0 240.0
H10 C11 H12 H11 120.0 120.0
H13 C12 C8 C5 59.7 60.0
C8 C12 H13 H14 120.0 120.1
C8 C12 H13 H15 240.0 240.0
H14 C12 H13 H15 120.0 119.9
H14 C12 C8 C5 179.8 180.0
C8 C12 H14 H13 240.0 239.9
C8 C12 H14 H15 120.0 120.0
H13 C12 H14 H15 240.0 240.1
H15 C12 C8 C5 299.8 300.0
C8 C12 H15 H13 120.0 120.0
C8 C12 H15 H14 240.0 239.9
H13 C12 H15 H14 120.0 119.9
C1 C4 H16 S7 242.9 240.0
C1 C4 H16 H17 121.4 120.0
H16 C4 S7 C9 142.3 60.0
S7 C4 H16 H17 238.5 240.0
C1 C4 H17 S7 117.1 120.0
C1 C4 H17 H16 238.6 240.0
H17 C4 S7 C9 21.3 300.0
S7 C4 H17 H16 121.5 120.0
H20 C10 H19 H21 120.0 120.0
H19 C10 H20 H21 240.0 240.0
H19 C10 H21 H20 120.0 120.0
C9 C14 H22 N16 180.0 179.8
C18 N17 H23 C15 180.0 180.1
H24 N25 C24 H8 65.6 65.8
H24 N25 C24 H9 305.0 305.9
H24 N25 C23 H6 295.5 54.2
H24 N25 C23 H7 55.5 294.2