PDB Chemical Component 56A

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 56A

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O C 1.254 1.208
OXT C 1.344 1.342
C CA 1.496 1.507
CA N 1.461 1.469
N H2 1.000 1.009
N H 1.000 1.009
CA CB 1.523 1.530
CA HA 1.100 1.090
CG CB 1.520 1.507
CB HB 1.100 1.090
CB HBA 1.100 1.090
CD2 CG 1.353 1.346
CG ND1 1.386 1.369
ND1 C27 1.464 1.465
C27 C28 1.508 1.530
C27 H27 1.100 1.090
C27 H27A 1.100 1.090
C28 C29 1.529 1.530
C28 H28 1.100 1.091
C28 H28A 1.100 1.089
C29 C30 1.528 1.531
C29 H29 1.100 1.090
C29 H29A 1.100 1.089
C30 C31 1.490 1.530
C30 H30 1.100 1.090
C30 H30A 1.100 1.089
C31 C32 1.546 1.530
C31 H31 1.100 1.090
C31 H31A 1.100 1.089
C33 C32 1.562 1.530
C32 H32 1.100 1.090
C32 H32A 1.100 1.089
C33 C34 1.537 1.530
C33 H33 1.100 1.091
C33 H33A 1.100 1.089
C34 C35 1.517 1.507
C34 H34 1.100 1.090
C34 H34A 1.100 1.090
C35 C40 1.393 1.383
C35 C36 1.391 1.383
C36 C37 1.391 1.382
C36 H36 1.080 1.080
C37 C38 1.384 1.383
C37 H37 1.080 1.080
C39 C38 1.386 1.383
C38 H38 1.080 1.080
C40 C39 1.384 1.382
C39 H39 1.080 1.080
C40 H40 1.080 1.080
CE1 ND1 1.378 1.351
NE2 CD2 1.371 1.341
CD2 HD2 1.080 1.080
NE2 CE1 1.299 1.305
CE1 HE1 1.080 1.080
OXT HXT 0.950 0.967

Bond Angles for 56A

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O C CA 123.8 120.0
C CA N 106.9 109.5
C CA CB 112.8 109.5
C CA HA 110.0 109.4
CA N H2 109.5 111.0
CA N H 109.4 111.0
H2 N H 109.4 111.0
CB CA HA 104.4 109.5
CA CB HB 107.8 109.5
CA CB HBA 107.9 109.5
CG CB HB 107.8 109.5
CG CB HBA 107.9 109.5
HB CB HBA 111.0 109.4
CG ND1 C27 124.5 126.5
ND1 C27 H27 110.3 109.4
ND1 C27 H27A 110.3 109.5
C28 C27 H27 110.4 109.4
C28 C27 H27A 110.4 109.5
C27 C28 C29 111.0 109.4
C27 C28 H28 109.0 109.5
C27 C28 H28A 108.9 109.5
H27 C27 H27A 108.6 109.5
C29 C28 H28 108.9 109.4
C29 C28 H28A 109.0 109.5
C28 C29 C30 107.9 109.5
C28 C29 H29 110.0 109.5
C28 C29 H29A 110.0 109.5
H28 C28 H28A 110.0 109.5
C30 C29 H29 110.0 109.4
C30 C29 H29A 110.0 109.5
C29 C30 C31 102.3 109.5
C29 C30 H30 111.9 109.4
C29 C30 H30A 111.9 109.4
H29 C29 H29A 108.9 109.5
C31 C30 H30 111.9 109.5
C31 C30 H30A 111.9 109.5
C30 C31 C32 105.6 109.4
C30 C31 H31 110.8 109.5
C30 C31 H31A 110.8 109.5
H30 C30 H30A 106.9 109.5
C32 C31 H31 110.8 109.5
C32 C31 H31A 110.8 109.5
C31 C32 H32 109.9 109.5
C31 C32 H32A 109.9 109.5
H31 C31 H31A 108.1 109.5
C33 C32 H32 109.8 109.5
C33 C32 H32A 109.9 109.5
H32 C32 H32A 109.1 109.5
C34 C33 H33 108.8 109.5
C34 C33 H33A 108.8 109.5
C33 C34 C35 115.9 109.4
C33 C34 H34 107.4 109.5
C33 C34 H34A 107.4 109.4
H33 C33 H33A 110.1 109.5
C35 C34 H34 107.4 109.5
C35 C34 H34A 107.4 109.4
C34 C35 C40 119.0 120.0
C34 C35 C36 122.0 120.1
H34 C34 H34A 111.5 109.5
C36 C35 C40 119.0 120.0
C35 C40 C39 122.9 120.0
C35 C40 H40 118.5 120.0
C35 C36 C37 118.5 120.0
C35 C36 H36 120.7 120.0
C37 C36 H36 120.7 120.0
C36 C37 C38 121.3 120.0
C36 C37 H37 119.4 120.0
C38 C37 H37 119.3 120.0
C37 C38 H38 119.5 120.0
C39 C38 H38 119.5 120.0
C40 C39 H39 121.4 120.0
NE2 CD2 HD2 126.1 126.0
NE2 CE1 HE1 125.2 125.6

Torsion Angles for 56A

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O C CA N 339.2 340.0
O C CA CB 103.0 100.0
O C CA HA 219.1 220.0
OXT C CA HA 48.1 40.3
C CA N H2 180.0 296.1
C CA N H 300.0 60.0
CB CA C HA 243.9 240.0
C CA CB HB 49.9 295.0
C CA CB HBA 169.9 55.0
C CA N CB 124.1 120.0
C CA N HA 240.3 240.0
H2 N CA H 240.0 236.1
CA N H2 H 120.0 123.9
CA N H H2 240.0 236.1
C CA CB N 239.2 240.0
C CA CB HA 119.4 120.0
CB CA N H2 55.9 176.1
CB CA N H 175.9 300.0
CG CB CA HB 240.0 240.0
CG CB CA HBA 120.0 120.0
HB CB CA HBA 240.0 240.0
C CA HA N 117.8 120.0
C CA HA CB 238.7 240.0
HA CA N H2 299.7 56.0
HA CA N H 59.7 180.0
HA CA CB HB 290.5 175.1
HA CA CB HBA 50.5 295.0
CG CB CA HA 170.5 55.0
CA CB CG HB 120.0 120.0
CA CB CG HBA 240.0 240.0
HB CB CG HBA 120.0 120.0
HB CB CA HA 290.5 175.1
CA CB HB HBA 118.0 120.0
CG CB HB HBA 242.0 240.0
HBA CB CA HA 50.5 295.0
CA CB HBA HB 242.0 240.0
CG CB HBA HB 118.0 120.0
CD2 CG CB HB 322.6 324.6
CD2 CG CB HBA 202.6 204.6
ND1 CG CB HB 141.4 145.0
ND1 CG CB HBA 21.4 25.0
CG ND1 C27 H27 35.6 325.1
CG ND1 C27 H27A 155.6 205.0
C28 C27 ND1 H27 240.0 119.9
C28 C27 ND1 H27A 120.0 240.0
ND1 C27 C28 H28 298.9 300.0
ND1 C27 C28 H28A 58.9 60.0
H27 C27 ND1 H27A 240.0 120.1
CG ND1 C27 C28 275.6 85.0
ND1 C27 C28 H27 120.0 240.1
ND1 C27 C28 H27A 240.0 120.0
H27 C27 C28 H27A 120.0 240.0
C29 C28 C27 H28 240.0 240.1
C29 C28 C27 H28A 120.0 120.0
C27 C28 C29 C30 177.6 180.0
C27 C28 C29 H29 297.6 300.0
C27 C28 C29 H29A 57.6 60.0
H28 C28 C27 H28A 240.0 239.9
ND1 C27 H27 H27A 121.0 239.9
C28 C27 H27 H27A 238.9 120.0
H27 C27 C28 C29 58.9 300.0
H27 C27 C28 H28 178.9 59.9
H27 C27 C28 H28A 298.9 180.0
ND1 C27 H27A H27 239.0 120.0
C28 C27 H27A H27 121.1 240.0
H27A C27 C28 C29 298.9 60.0
H27A C27 C28 H28 58.9 179.9
H27A C27 C28 H28A 178.9 300.0
C29 C28 C27 H27 58.9 300.0
C29 C28 C27 H27A 298.9 60.0
C27 C28 C29 H28 120.0 120.0
C27 C28 C29 H28A 240.0 240.0
H28 C28 C29 H28A 120.0 120.0
C30 C29 C28 H29 240.0 240.0
C30 C29 C28 H29A 120.0 120.0
C28 C29 C30 C31 161.3 180.0
C28 C29 C30 H30 281.3 300.0
C28 C29 C30 H30A 41.3 59.9
H29 C29 C28 H29A 240.0 240.0
H28 C28 C27 H27 178.9 59.9
H28 C28 C27 H27A 58.9 179.9
C27 C28 H28 C29 238.7 240.1
C27 C28 H28 H28A 119.3 120.0
C29 C28 H28 H28A 240.6 240.0
H28 C28 C29 C30 57.6 60.0
H28 C28 C29 H29 177.6 180.0
H28 C28 C29 H29A 297.6 300.0
H28A C28 C27 H27 298.9 180.0
H28A C28 C27 H27A 178.9 300.0
C27 C28 H28A C29 121.3 120.0
C27 C28 H28A H28 240.6 239.9
C29 C28 H28A H28 119.4 120.0
H28A C28 C29 C30 297.5 300.0
H28A C28 C29 H29 57.6 60.0
H28A C28 C29 H29A 177.5 180.0
C30 C29 C28 H28 57.6 60.0
C30 C29 C28 H28A 297.5 300.0
C28 C29 C30 H29 120.0 120.0
C28 C29 C30 H29A 240.0 240.0
H29 C29 C30 H29A 120.0 120.0
C31 C30 C29 H30 240.0 240.0
C31 C30 C29 H30A 120.0 120.0
C29 C30 C31 C32 174.7 180.0
C29 C30 C31 H31 294.7 300.0
C29 C30 C31 H31A 54.7 60.0
H30 C30 C29 H30A 240.0 240.1
H29 C29 C28 H28 177.6 180.0
H29 C29 C28 H28A 57.6 60.0
C28 C29 H29 C30 241.2 240.0
C28 C29 H29 H29A 120.6 120.0
C30 C29 H29 H29A 239.4 240.0
H29 C29 C30 C31 41.3 60.0
H29 C29 C30 H30 161.3 180.0
H29 C29 C30 H30A 281.3 299.9
H29A C29 C28 H28 297.6 300.0
H29A C29 C28 H28A 177.5 180.0
C28 C29 H29A C30 118.8 120.0
C28 C29 H29A H29 239.4 240.0
C30 C29 H29A H29 120.6 120.0
H29A C29 C30 C31 281.3 300.0
H29A C29 C30 H30 41.3 60.0
H29A C29 C30 H30A 161.3 180.0
C31 C30 C29 H29 41.3 60.0
C31 C30 C29 H29A 281.3 300.0
C29 C30 C31 H30 120.0 120.0
C29 C30 C31 H30A 240.0 240.0
H30 C30 C31 H30A 120.0 120.0
C32 C31 C30 H31 240.0 240.0
C32 C31 C30 H31A 120.0 120.0
C30 C31 C32 H32 199.1 300.0
C30 C31 C32 H32A 319.1 60.0
H31 C31 C30 H31A 240.0 240.0
H30 C30 C29 H29 161.3 180.0
H30 C30 C29 H29A 41.3 60.0
C29 C30 H30 C31 245.8 240.0
C29 C30 H30 H30A 122.9 119.9
C31 C30 H30 H30A 237.1 239.9
H30 C30 C31 C32 54.7 60.0
H30 C30 C31 H31 174.7 180.0
H30 C30 C31 H31A 294.7 300.0
H30A C30 C29 H29 281.3 299.9
H30A C30 C29 H29A 161.3 180.0
C29 C30 H30A C31 114.2 120.0
C29 C30 H30A H30 237.1 240.1
C31 C30 H30A H30 122.9 120.1
H30A C30 C31 C32 294.7 300.0
H30A C30 C31 H31 54.7 60.0
H30A C30 C31 H31A 174.7 180.0
C32 C31 C30 H30 54.7 60.0
C32 C31 C30 H30A 294.7 300.0
C30 C31 C32 H31 120.0 120.0
C30 C31 C32 H31A 240.0 240.0
H31 C31 C32 H31A 120.0 120.0
C33 C32 C31 H32 240.0 240.0
C33 C32 C31 H32A 120.0 120.0
H32 C32 C31 H32A 240.0 240.0
H31 C31 C30 H30 174.7 180.0
H31 C31 C30 H30A 54.7 60.0
C30 C31 H31 C32 243.2 240.0
C30 C31 H31 H31A 121.6 120.0
C32 C31 H31 H31A 238.4 240.0
H31 C31 C32 H32 79.1 180.0
H31 C31 C32 H32A 199.1 300.0
H31A C31 C30 H30 294.7 300.0
H31A C31 C30 H30A 174.7 180.0
C30 C31 H31A C32 116.8 119.9
C30 C31 H31A H31 238.4 240.0
C32 C31 H31A H31 121.6 120.0
H31A C31 C32 H32 319.2 60.0
H31A C31 C32 H32A 79.1 180.0
C33 C32 C31 H31 319.1 60.0
C33 C32 C31 H31A 199.2 300.0
C31 C32 C33 H32 120.0 120.0
C31 C32 C33 H32A 240.0 240.0
H32 C32 C33 H32A 120.0 120.0
H32 C32 C31 H31 79.1 180.0
H32 C32 C31 H31A 319.2 60.0
C31 C32 H32 H32A 120.5 120.0
C33 C32 H32 H32A 239.6 240.0
H32A C32 C31 H31 199.1 300.0
H32A C32 C31 H31A 79.1 180.0
C31 C32 H32A H32 239.5 240.0
C33 C32 H32A H32 120.4 120.0
C34 C33 C32 H32 52.3 60.0
C34 C33 C32 H32A 292.3 300.0
H33 C33 C34 H33A 120.0 120.1
C35 C34 C33 H34 240.0 240.0
C35 C34 C33 H34A 120.0 119.9
C33 C34 C35 C40 288.1 90.1
C33 C34 C35 C36 105.7 270.3
H34 C34 C33 H34A 240.0 239.9
H33 C33 C32 H32 172.3 180.0
H33 C33 C32 H32A 52.3 60.0
C34 C33 H33 H33A 240.8 240.0
H33 C33 C34 C35 179.9 60.0
H33 C33 C34 H34 299.9 180.0
H33 C33 C34 H34A 60.0 300.1
H33A C33 C32 H32 292.3 300.0
H33A C33 C32 H32A 172.3 180.0
C34 C33 H33A H33 119.2 120.1
H33A C33 C34 C35 59.9 300.0
H33A C33 C34 H34 179.9 60.0
H33A C33 C34 H34A 299.9 180.0
C35 C34 C33 H33 179.9 60.0
C35 C34 C33 H33A 59.9 300.0
C33 C34 C35 H34 120.0 120.0
C33 C34 C35 H34A 240.0 240.1
H34 C34 C35 H34A 120.0 120.0
C36 C35 C34 C40 177.7 180.2
C34 C35 C40 C39 179.4 179.7
C34 C35 C40 H40 359.4 359.9
C34 C35 C36 C37 180.5 180.0
C34 C35 C36 H36 0.6 0.0
H34 C34 C33 H33 299.9 180.0
H34 C34 C33 H33A 179.9 60.0
C33 C34 H34 C35 234.8 240.0
C33 C34 H34 H34A 117.4 120.0
C35 C34 H34 H34A 242.6 240.0
H34 C34 C35 C40 168.1 330.0
H34 C34 C35 C36 345.8 150.2
H34A C34 C33 H33 60.0 300.1
H34A C34 C33 H33A 299.9 180.0
C33 C34 H34A C35 125.2 119.9
C33 C34 H34A H34 242.6 239.9
C35 C34 H34A H34 117.4 120.0
H34A C34 C35 C40 48.1 210.0
H34A C34 C35 C36 225.7 30.2
C40 C35 C34 H34 168.1 330.0
C40 C35 C34 H34A 48.1 210.0
C34 C35 C40 C36 177.7 180.2
C40 C35 C36 C37 358.2 0.2
C40 C35 C36 H36 178.2 180.2
C35 C40 C39 H39 178.3 180.2
C36 C35 C34 H34 345.8 150.2
C36 C35 C34 H34A 225.7 30.2
C34 C35 C36 C40 182.3 179.8
C36 C35 C40 C39 1.7 359.5
C36 C35 C40 H40 181.7 179.7
C37 C36 C35 H36 180.0 180.0
C35 C36 C37 C38 2.1 360.0
C35 C36 C37 H37 182.1 180.0
C37 C36 C35 C40 358.2 0.2
C35 C36 C37 H36 180.0 180.0
C38 C37 C36 H37 180.0 180.0
C36 C37 C38 H38 177.9 180.0
H36 C36 C35 C40 178.2 180.2
C35 C36 H36 C37 180.0 180.0
H36 C36 C37 C38 182.0 180.0
H36 C36 C37 H37 2.0 0.0
C38 C37 C36 H36 182.0 180.0
C36 C37 C38 H37 180.0 180.0
C39 C38 C37 H38 180.0 180.1
H37 C37 C36 H36 2.0 0.0
C36 C37 H37 C38 180.0 180.0
H37 C37 C38 H38 357.9 360.0
C35 C40 C39 C38 358.3 0.5
C39 C38 C37 H37 177.9 180.0
C37 C38 C39 H38 180.0 179.9
H38 C38 C37 H37 357.9 360.0
C35 C40 C39 H40 180.0 180.2
C40 C39 C38 H38 181.9 179.8
H39 C39 C38 H38 1.9 0.1
C35 C40 H40 C39 180.0 179.8
H40 C40 C39 H39 358.3 0.0
CE1 ND1 C27 H27 210.6 145.1
CE1 ND1 C27 H27A 330.6 25.0
CE1 NE2 CD2 HD2 181.1 180.2