PDB Chemical Component 566

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 566

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.545 1.531
C1 C6 1.547 1.530
C1 H11 1.100 1.090
C1 H12 1.100 1.090
C2 C3 1.545 1.530
C2 H21 1.100 1.090
C2 H22 1.100 1.090
C3 C4 1.544 1.530
C3 N19 1.487 1.465
C3 H3 1.100 1.090
C4 C5 1.546 1.531
C4 H41 1.100 1.090
C4 H42 1.100 1.090
C5 C6 1.551 1.530
C5 H51 1.100 1.090
C5 H52 1.100 1.090
C6 H61 1.100 1.090
C6 H62 1.100 1.090
C15 C16 1.510 1.512
C15 N19 1.340 1.344
C15 O38 1.214 1.214
C16 C17 1.469 1.546
C16 H161 1.100 1.090
C16 H162 1.100 1.091
C17 C18 1.624 1.545
C17 C33 1.525 1.507
C17 H17 1.100 1.090
C18 N19 1.653 1.468
C18 H181 1.100 1.090
C18 H182 1.100 1.090
C24 C25 1.408 1.381
C24 C29 1.424 1.389
C24 H24 1.080 1.080
C25 C26 1.411 1.383
C25 H25 1.080 1.079
C26 C27 1.410 1.383
C26 H26 1.080 1.080
C27 C28 1.409 1.380
C27 H27 1.080 1.081
C28 C29 1.414 1.389
C28 H28 1.080 1.079
C29 N35 1.399 1.400
C33 N35 1.372 1.348
C33 O37 1.232 1.213
N35 HN35 1.000 0.970

Bond Angles for 566

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 113.5 109.5
C2 C1 H11 107.2 109.4
C2 C1 H12 108.2 109.5
C1 C2 C3 113.2 109.5
C1 C2 H21 107.4 109.4
C1 C2 H22 108.3 109.4
C6 C1 H11 107.2 109.5
C6 C1 H12 108.1 109.5
C1 C6 C5 113.9 109.5
C1 C6 H61 107.0 109.5
C1 C6 H62 108.0 109.5
H11 C1 H12 112.7 109.5
C3 C2 H21 107.4 109.5
C3 C2 H22 108.3 109.5
C2 C3 C4 112.3 109.5
C2 C3 N19 109.4 109.4
C2 C3 H3 109.2 109.5
H21 C2 H22 112.4 109.5
C4 C3 N19 113.8 109.5
C4 C3 H3 104.4 109.5
C3 C4 C5 111.3 109.5
C3 C4 H41 108.5 109.5
C3 C4 H42 108.9 109.5
N19 C3 H3 107.6 109.5
C3 N19 C15 117.9 124.4
C3 N19 C18 113.9 124.3
C5 C4 H41 108.5 109.4
C5 C4 H42 108.9 109.5
C4 C5 C6 113.1 109.5
C4 C5 H51 107.4 109.4
C4 C5 H52 108.3 109.4
H41 C4 H42 110.9 109.5
C6 C5 H51 107.4 109.5
C6 C5 H52 108.3 109.5
C5 C6 H61 107.0 109.5
C5 C6 H62 108.0 109.5
H51 C5 H52 112.4 109.5
H61 C6 H62 113.0 109.5
C16 C15 N19 110.9 110.1
C16 C15 O38 123.1 125.0
C15 C16 C17 107.5 104.2
C15 C16 H161 110.6 110.5
C15 C16 H162 110.1 110.5
N19 C15 O38 125.9 124.9
C15 N19 C18 114.1 111.3
C17 C16 H161 110.6 110.5
C17 C16 H162 110.1 110.5
C16 C17 C18 111.4 101.7
C16 C17 C33 104.8 111.0
C16 C17 H17 112.3 111.0
H161 C16 H162 108.0 110.5
C18 C17 C33 112.2 111.0
C18 C17 H17 104.9 111.0
C17 C18 N19 96.0 105.5
C17 C18 H181 116.9 110.3
C17 C18 H182 114.2 110.2
C33 C17 H17 111.5 110.9
C17 C33 N35 110.6 120.0
C17 C33 O37 122.0 120.0
N19 C18 H181 116.9 110.4
N19 C18 H182 114.2 110.0
H181 C18 H182 99.6 110.3
C25 C24 C29 120.0 119.9
C25 C24 H24 120.0 120.1
C24 C25 C26 120.0 120.1
C24 C25 H25 120.0 120.0
C29 C24 H24 120.0 120.0
C24 C29 C28 119.5 119.9
C24 C29 N35 123.2 120.0
C26 C25 H25 120.0 120.0
C25 C26 C27 120.2 120.2
C25 C26 H26 119.9 119.9
C27 C26 H26 119.9 119.9
C26 C27 C28 120.1 120.1
C26 C27 H27 120.0 119.9
C28 C27 H27 120.0 120.0
C27 C28 C29 120.2 119.9
C27 C28 H28 119.9 120.1
C29 C28 H28 119.9 120.0
C28 C29 N35 117.3 120.1
C29 N35 C33 126.4 120.0
C29 N35 HN35 116.8 120.0
N35 C33 O37 127.4 119.9
C33 N35 HN35 116.8 120.0

Torsion Angles for 566

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 H11 118.2 240.0
C6 C1 C2 H12 240.0 120.0
C2 C1 C6 C5 314.6 60.0
C2 C1 C6 H61 196.5 180.0
C2 C1 C6 H62 74.6 300.0
H11 C1 C2 H12 121.8 240.0
C3 C2 C1 H21 118.4 120.0
C3 C2 C1 H22 240.0 240.0
C1 C2 C3 C4 307.2 60.0
C1 C2 C3 N19 179.9 180.0
C1 C2 C3 H3 62.4 300.0
H21 C2 C1 H22 121.6 120.0
C2 C1 C6 H11 241.8 120.0
C2 C1 C6 H12 120.0 240.0
C6 C1 C2 C3 47.7 300.0
C6 C1 C2 H21 289.4 180.0
C6 C1 C2 H22 167.8 60.0
H11 C1 C6 H12 238.2 120.0
C4 C5 C6 C1 48.2 300.0
C1 C6 C5 H51 166.6 59.9
C1 C6 C5 H52 288.2 180.0
C5 C6 C1 H61 118.0 240.0
C5 C6 C1 H62 240.0 120.0
H61 C6 C1 H62 122.0 240.0
C2 C1 H11 C6 122.2 240.0
C2 C1 H11 H12 241.1 120.0
H11 C1 C2 C3 289.5 60.0
H11 C1 C2 H21 171.1 300.0
H11 C1 C2 H22 49.5 180.0
C6 C1 H11 H12 118.9 240.0
H11 C1 C6 C5 72.8 300.1
H11 C1 C6 H61 314.8 60.0
H11 C1 C6 H62 192.8 180.1
C2 C1 H12 C6 236.7 120.0
C2 C1 H12 H11 118.4 240.0
H12 C1 C2 C3 167.7 180.0
H12 C1 C2 H21 49.3 60.0
H12 C1 C2 H22 287.8 300.0
C6 C1 H12 H11 241.7 120.0
H12 C1 C6 C5 194.6 180.0
H12 C1 C6 H61 76.5 300.0
H12 C1 C6 H62 314.6 60.0
C3 C2 C1 C6 47.7 300.0
C3 C2 C1 H11 289.5 60.0
C3 C2 C1 H12 167.7 180.0
C1 C2 C3 H21 241.6 240.0
C1 C2 C3 H22 120.0 120.0
H21 C2 C3 H22 238.4 239.9
C4 C3 C2 N19 127.3 240.0
C4 C3 C2 H3 244.7 120.0
C2 C3 C4 C5 54.9 300.0
C2 C3 C4 H41 295.6 59.9
C2 C3 C4 H42 174.9 180.0
N19 C3 C2 H3 117.5 240.0
C2 C3 N19 C15 209.4 299.5
C2 C3 N19 C18 71.5 120.1
H21 C2 C1 C6 289.4 180.0
H21 C2 C1 H11 171.1 300.0
H21 C2 C1 H12 49.3 60.0
C1 C2 H21 C3 122.1 120.0
C1 C2 H21 H22 241.0 240.0
C3 C2 H21 H22 119.0 120.1
H21 C2 C3 C4 65.6 180.0
H21 C2 C3 N19 298.3 299.9
H21 C2 C3 H3 180.8 60.0
H22 C2 C1 C6 167.8 60.0
H22 C2 C1 H11 49.5 180.0
H22 C2 C1 H12 287.8 300.0
C1 C2 H22 C3 237.0 240.0
C1 C2 H22 H21 118.5 120.0
C3 C2 H22 H21 241.5 239.9
H22 C2 C3 C4 187.2 300.1
H22 C2 C3 N19 59.9 60.0
H22 C2 C3 H3 302.4 180.0
C4 C3 C2 H21 65.6 180.0
C4 C3 C2 H22 187.2 300.1
C2 C3 C4 N19 235.1 119.9
C2 C3 C4 H3 118.2 240.0
N19 C3 C4 H3 243.0 120.1
C4 C3 N19 C15 82.9 59.5
C4 C3 N19 C18 305.1 240.0
C5 C4 C3 H41 119.2 240.0
C5 C4 C3 H42 240.0 120.0
C3 C4 C5 C6 307.4 60.0
C3 C4 C5 H51 189.0 300.0
C3 C4 C5 H52 67.4 180.0
H41 C4 C3 H42 120.7 240.0
N19 C3 C2 H21 298.3 299.9
N19 C3 C2 H22 59.9 60.0
C2 C3 N19 C4 126.4 240.0
C2 C3 N19 H3 241.5 120.0
C4 C3 N19 H3 115.1 239.9
N19 C3 C4 C5 179.8 180.0
N19 C3 C4 H41 60.5 300.0
N19 C3 C4 H42 299.8 60.0
C16 C15 N19 C3 220.9 180.4
C3 N19 C15 O38 41.6 0.7
C15 N19 C3 C18 137.8 179.5
C17 C18 N19 C3 140.3 163.0
C3 N19 C18 H181 264.6 43.8
C3 N19 C18 H182 20.3 281.9
H3 C3 C2 H21 180.8 60.0
H3 C3 C2 H22 302.4 180.0
C2 C3 H3 C4 239.8 120.0
C2 C3 H3 N19 118.6 240.0
C4 C3 H3 N19 238.8 120.0
H3 C3 C4 C5 296.7 60.0
H3 C3 C4 H41 177.5 179.9
H3 C3 C4 H42 56.7 300.0
H3 C3 N19 C15 327.8 179.6
H3 C3 N19 C18 190.0 0.1
C1 C6 C5 C4 48.2 300.0
C5 C4 C3 N19 179.8 180.0
C5 C4 C3 H3 296.7 60.0
C3 C4 C5 H41 240.8 120.0
C3 C4 C5 H42 120.0 240.0
H41 C4 C5 H42 239.3 120.0
C6 C5 C4 H51 118.4 120.0
C6 C5 C4 H52 240.0 240.0
C4 C5 C6 H61 166.2 180.0
C4 C5 C6 H62 288.2 60.0
H51 C5 C4 H52 121.6 120.0
H41 C4 C3 N19 60.5 300.0
H41 C4 C3 H3 177.5 179.9
C3 C4 H41 C5 121.0 240.0
C3 C4 H41 H42 240.5 120.0
C5 C4 H41 H42 119.5 240.0
H41 C4 C5 C6 66.6 300.0
H41 C4 C5 H51 308.2 180.0
H41 C4 C5 H52 186.6 60.0
H42 C4 C3 N19 299.8 60.0
H42 C4 C3 H3 56.7 300.0
C3 C4 H42 C5 238.5 120.0
C3 C4 H42 H41 119.2 240.0
C5 C4 H42 H41 240.8 120.0
H42 C4 C5 C6 187.4 180.0
H42 C4 C5 H51 69.0 60.0
H42 C4 C5 H52 307.4 300.0
C5 C6 C1 H11 72.8 300.1
C5 C6 C1 H12 194.6 180.0
C1 C6 C5 H61 242.0 120.0
C1 C6 C5 H62 120.0 240.0
C6 C5 C4 H41 66.6 300.0
C6 C5 C4 H42 187.4 180.0
C4 C5 C6 H51 241.6 240.0
C4 C5 C6 H52 120.0 120.0
H51 C5 C6 H52 238.4 239.9
H61 C6 C5 H62 238.0 120.0
H51 C5 C4 H41 308.2 180.0
H51 C5 C4 H42 69.0 60.0
C4 C5 H51 C6 122.0 120.0
C4 C5 H51 H52 241.0 240.0
C6 C5 H51 H52 119.0 120.1
H51 C5 C6 H61 284.7 300.0
H51 C5 C6 H62 46.6 180.0
H52 C5 C4 H41 186.6 60.0
H52 C5 C4 H42 307.4 300.0
C4 C5 H52 C6 237.0 240.0
C4 C5 H52 H51 118.5 120.0
C6 C5 H52 H51 241.5 239.9
H52 C5 C6 H61 46.2 60.0
H52 C5 C6 H62 168.2 300.0
H61 C6 C1 H11 314.8 60.0
H61 C6 C1 H12 76.5 300.0
C1 C6 H61 C5 122.4 240.0
C1 C6 H61 H62 241.2 120.0
H61 C6 C5 H51 284.7 300.0
H61 C6 C5 H52 46.2 60.0
C5 C6 H61 H62 118.8 240.0
H62 C6 C1 H11 192.8 180.1
H62 C6 C1 H12 314.6 60.0
C1 C6 H62 C5 236.4 120.0
C1 C6 H62 H61 118.2 240.0
H62 C6 C5 H51 46.6 180.0
H62 C6 C5 H52 168.2 300.0
C5 C6 H62 H61 241.8 120.0
C3 N19 C15 C16 220.9 180.4
N19 C15 C16 O38 180.7 180.3
C16 C15 N19 C18 358.6 360.0
C17 C16 C15 H161 120.8 241.3
C17 C16 C15 H162 240.0 118.7
C15 C16 C17 C18 359.3 335.2
C15 C16 C17 C33 120.9 93.4
C15 C16 C17 H17 242.0 217.1
H161 C16 C15 H162 119.2 237.4
C15 N19 C3 H3 327.8 179.6
C3 N19 C15 C18 222.3 180.5
C16 C15 N19 O38 179.3 179.7
N19 C15 C16 C17 1.3 16.5
N19 C15 C16 H161 240.5 135.2
N19 C15 C16 H162 121.3 257.8
C17 C18 N19 C15 0.9 343.4
C15 N19 C18 H181 125.2 224.3
C15 N19 C18 H182 240.9 102.3
C16 C15 O38 N19 180.8 180.3
O38 C15 C16 C17 180.6 196.2
O38 C15 C16 H161 59.8 314.9
O38 C15 C16 H162 300.6 77.5
O38 C15 N19 C18 179.3 180.3
C17 C16 C15 N19 1.3 16.5
C17 C16 C15 O38 180.6 196.2
C15 C16 C17 H161 239.2 118.7
C15 C16 C17 H162 120.0 241.3
H161 C16 C17 H162 240.8 122.6
C18 C17 C16 C33 238.4 241.9
C18 C17 C16 H17 117.3 118.1
C16 C17 C18 N19 360.0 25.1
C16 C17 C18 H181 235.7 144.4
C16 C17 C18 H182 119.9 266.4
C33 C17 C16 H17 238.8 236.3
C16 C17 C33 N35 70.8 61.5
C16 C17 C33 O37 253.2 241.5
H161 C16 C15 N19 240.5 135.2
H161 C16 C15 O38 59.8 314.9
C15 C16 H161 C17 118.9 245.2
C15 C16 H161 H162 239.4 122.6
C17 C16 H161 H162 120.5 237.4
H161 C16 C17 C18 120.1 216.5
H161 C16 C17 C33 241.7 334.6
H161 C16 C17 H17 2.8 98.4
H162 C16 C15 N19 121.3 257.8
H162 C16 C15 O38 300.6 77.5
C15 C16 H162 C17 241.6 114.8
C15 C16 H162 H161 120.8 237.4
C17 C16 H162 H161 239.2 122.6
H162 C16 C17 C18 239.3 93.9
H162 C16 C17 C33 0.9 212.0
H162 C16 C17 H17 122.0 335.8
C3 N19 C18 C17 140.3 163.0
C15 N19 C18 C17 0.9 343.4
C18 C17 C16 H161 120.1 216.5
C18 C17 C16 H162 239.3 93.9
C16 C17 C18 C33 117.2 118.1
C16 C17 C18 H17 238.3 241.8
C33 C17 C18 H17 121.1 123.7
C18 C17 C33 N35 191.9 173.8
C18 C17 C33 O37 14.3 353.9
N19 C18 C17 H181 124.3 240.7
N19 C18 C17 H182 240.0 118.8
H181 C18 C17 H182 115.7 238.0
C33 C17 C16 H161 241.7 334.6
C33 C17 C16 H162 0.9 212.0
C16 C17 C33 C18 238.9 247.6
C16 C17 C33 H17 121.7 123.8
C18 C17 C33 H17 242.8 236.2
C33 C17 C18 N19 242.8 267.0
C33 C17 C18 H181 118.5 26.3
C33 C17 C18 H182 2.8 148.3
C29 N35 C33 C17 182.7 185.6
N35 C33 C17 O37 177.6 180.0
C17 C33 N35 HN35 2.7 5.6
H17 C17 C16 H161 2.8 98.4
H17 C17 C16 H162 122.0 335.8
C16 C17 H17 C18 121.1 112.4
C16 C17 H17 C33 242.7 236.2
C18 C17 H17 C33 121.6 123.8
H17 C17 C18 N19 121.7 143.3
H17 C17 C18 H181 357.4 262.6
H17 C17 C18 H182 241.6 24.5
H17 C17 C33 N35 309.1 297.7
H17 C17 C33 O37 131.5 117.7
C18 N19 C3 H3 190.0 0.1
C3 N19 C18 C15 139.4 179.5
C18 N19 C15 O38 179.3 180.3
N19 C18 C17 C33 242.8 267.0
N19 C18 C17 H17 121.7 143.3
C17 C18 N19 H181 235.7 119.2
C17 C18 N19 H182 120.0 241.1
H181 C18 N19 H182 244.3 121.9
H181 C18 C17 C33 118.5 26.3
H181 C18 C17 H17 357.4 262.6
C17 C18 H181 N19 112.9 243.7
C17 C18 H181 H182 236.4 122.0
N19 C18 H181 H182 123.6 238.2
H182 C18 C17 C33 2.8 148.3
H182 C18 C17 H17 241.6 24.5
C17 C18 H182 N19 250.9 116.0
C17 C18 H182 H181 125.4 238.0
N19 C18 H182 H181 234.6 122.0
C29 C24 C25 H24 180.0 180.6
C25 C24 C29 C28 0.1 359.5
C25 C24 C29 N35 179.0 179.7
C26 C25 C24 H25 180.0 180.3
C24 C25 C26 C27 0.0 359.7
C24 C25 C26 H26 180.0 179.7
C25 C24 C29 H24 180.0 179.4
C29 C24 C25 C26 360.0 0.6
C29 C24 C25 H25 180.0 180.3
C27 C28 C29 C24 359.9 0.2
C24 C29 C28 H28 179.9 180.2
C28 C29 C24 N35 181.0 179.8
C24 C29 N35 C33 354.4 217.0
C24 C29 N35 HN35 174.4 37.0
C25 C24 H24 C29 180.0 180.6
H24 C24 C25 C26 180.0 180.0
H24 C24 C25 H25 360.0 359.7
H24 C24 C29 C28 180.1 180.0
H24 C24 C29 N35 359.0 0.3
C26 C25 C24 C29 360.0 0.6
C26 C25 C24 H24 180.0 180.0
C24 C25 C26 H25 180.0 179.7
C27 C26 C25 H26 180.0 180.0
C25 C26 C27 C28 359.9 0.0
C25 C26 C27 H27 179.9 180.0
H25 C25 C24 C29 180.0 180.3
H25 C25 C24 H24 360.0 359.7
C24 C25 H25 C26 180.0 180.3
H25 C25 C26 C27 180.0 180.0
H25 C25 C26 H26 0.0 0.0
C27 C26 C25 H25 180.0 180.0
C25 C26 C27 H26 180.0 180.0
C28 C27 C26 H27 180.0 180.0
C26 C27 C28 C29 0.1 0.0
C26 C27 C28 H28 180.1 180.0
H26 C26 C25 H25 0.0 0.0
C25 C26 H26 C27 180.0 180.0
H26 C26 C27 C28 179.9 180.0
H26 C26 C27 H27 359.9 360.0
C24 C29 C28 C27 359.9 0.2
C28 C27 C26 H26 179.9 180.0
C26 C27 C28 H27 180.0 180.0
C29 C28 C27 H28 180.0 180.0
C27 C28 C29 N35 180.8 180.0
H27 C27 C26 H26 359.9 360.0
C26 C27 H27 C28 180.0 180.0
H27 C27 C28 C29 180.1 180.0
H27 C27 C28 H28 0.1 0.0
C28 C29 C24 H24 180.1 180.0
C24 C29 C28 N35 179.0 180.2
C29 C28 C27 H27 180.1 180.0
C27 C28 C29 H28 180.0 180.0
C28 C29 N35 C33 173.4 37.2
C28 C29 N35 HN35 353.4 217.2
H28 C28 C27 H27 0.1 0.0
C27 C28 H28 C29 180.0 180.0
H28 C28 C29 N35 0.8 0.0
C17 C33 N35 C29 182.7 185.6
N35 C29 C24 H24 359.0 0.3
C24 C29 N35 C28 181.0 179.8
N35 C29 C28 H28 0.8 0.0
C29 N35 C33 O37 0.2 5.6
C33 N35 C29 HN35 180.0 179.9
N35 C33 C17 H17 309.1 297.7
C17 C33 N35 O37 182.6 180.0
C29 N35 C33 HN35 180.0 180.1
O37 C33 C17 H17 131.5 117.7
C17 C33 O37 N35 177.2 180.0
O37 C33 N35 HN35 180.2 185.6
C29 N35 HN35 C33 180.0 179.9
HN35 N35 C33 O37 180.2 185.6