PDB Chemical Component 55V
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 55V
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1P |
O1O |
1.465 |
1.429 |
| C1P |
H1P |
1.100 |
1.090 |
| C1P |
H1PA |
1.100 |
1.090 |
| C1P |
H1PB |
1.100 |
1.089 |
| O1O |
C1N |
1.374 |
1.360 |
| C1M |
C1N |
1.402 |
1.386 |
| C1N |
C1Q |
1.406 |
1.390 |
| C1M |
C1L |
1.393 |
1.383 |
| C1M |
H1M |
1.080 |
1.080 |
| C1Q |
O1V |
1.392 |
1.361 |
| C1Q |
C1R |
1.397 |
1.390 |
| O1V |
C1W |
1.444 |
1.429 |
| C1W |
H1W |
1.100 |
1.090 |
| C1W |
H1WA |
1.100 |
1.090 |
| C1W |
H1WB |
1.100 |
1.090 |
| C1S |
C1R |
1.401 |
1.386 |
| C1R |
O1T |
1.364 |
1.360 |
| O1T |
C1U |
1.438 |
1.429 |
| C1U |
H1U |
1.100 |
1.089 |
| C1U |
H1UA |
1.100 |
1.090 |
| C1U |
H1UB |
1.100 |
1.090 |
| C1L |
C1S |
1.394 |
1.382 |
| C1S |
H1S |
1.080 |
1.079 |
| C1J |
C1L |
1.548 |
1.507 |
| C1K |
C1J |
1.542 |
1.530 |
| C1J |
C1I |
1.477 |
1.472 |
| C1J |
C1X |
1.525 |
1.530 |
| C1K |
H1K |
1.100 |
1.090 |
| C1K |
H1KA |
1.100 |
1.090 |
| C1K |
H1KB |
1.100 |
1.090 |
| C1X |
H1X |
1.100 |
1.090 |
| C1X |
H1XA |
1.100 |
1.090 |
| C1X |
H1XB |
1.101 |
1.091 |
| C1I |
C1H |
1.235 |
1.174 |
| C1H |
C5 |
1.438 |
1.432 |
| C4 |
C5 |
1.399 |
1.395 |
| C5 |
C6 |
1.394 |
1.409 |
| C1Y |
C4 |
1.536 |
1.507 |
| C4 |
N3 |
1.341 |
1.323 |
| C1Y |
H1Y |
1.100 |
1.090 |
| C1Y |
H1YA |
1.100 |
1.090 |
| C1Y |
H1YB |
1.101 |
1.090 |
| N3 |
C2 |
1.333 |
1.325 |
| C2 |
N1Z |
1.325 |
1.383 |
| C2 |
N1 |
1.339 |
1.324 |
| N1Z |
HN1Z |
1.000 |
0.971 |
| N1Z |
HN1A |
1.000 |
0.969 |
| C6 |
N1 |
1.335 |
1.327 |
| C6 |
N1G |
1.329 |
1.384 |
| N1G |
HN1G |
0.999 |
0.969 |
| N1G |
HN1B |
1.000 |
0.970 |
Bond Angles for 55V
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1O |
C1P |
H1P |
109.5 |
109.4 |
| O1O |
C1P |
H1PA |
109.5 |
109.5 |
| O1O |
C1P |
H1PB |
109.4 |
109.5 |
| C1P |
O1O |
C1N |
115.4 |
117.0 |
| H1P |
C1P |
H1PA |
109.4 |
109.5 |
| H1P |
C1P |
H1PB |
109.5 |
109.4 |
| H1PA |
C1P |
H1PB |
109.5 |
109.5 |
| O1O |
C1N |
C1Q |
119.2 |
120.0 |
| C1M |
C1N |
C1Q |
120.1 |
119.9 |
| C1N |
C1Q |
O1V |
121.4 |
120.1 |
| C1N |
C1Q |
C1R |
119.1 |
119.8 |
| C1L |
C1M |
H1M |
119.6 |
119.9 |
| C1M |
C1L |
C1S |
118.7 |
120.2 |
| O1V |
C1Q |
C1R |
119.5 |
120.1 |
| C1Q |
O1V |
C1W |
116.7 |
117.0 |
| C1Q |
C1R |
O1T |
119.1 |
120.0 |
| O1V |
C1W |
H1W |
109.5 |
109.5 |
| O1V |
C1W |
H1WA |
109.5 |
109.5 |
| O1V |
C1W |
H1WB |
109.4 |
109.4 |
| H1W |
C1W |
H1WA |
109.4 |
109.5 |
| H1W |
C1W |
H1WB |
109.5 |
109.4 |
| H1WA |
C1W |
H1WB |
109.5 |
109.5 |
| C1R |
O1T |
C1U |
114.7 |
117.0 |
| O1T |
C1U |
H1U |
109.5 |
109.5 |
| O1T |
C1U |
H1UA |
109.5 |
109.4 |
| O1T |
C1U |
H1UB |
109.5 |
109.4 |
| H1U |
C1U |
H1UA |
109.4 |
109.5 |
| H1U |
C1U |
H1UB |
109.4 |
109.5 |
| H1UA |
C1U |
H1UB |
109.5 |
109.5 |
| C1L |
C1S |
H1S |
119.4 |
119.9 |
| C1K |
C1J |
C1I |
102.0 |
109.5 |
| C1K |
C1J |
C1X |
111.3 |
109.5 |
| C1X |
C1J |
C1I |
111.3 |
109.5 |
| C1J |
C1I |
C1H |
175.1 |
179.9 |
| C1J |
C1X |
H1X |
109.5 |
109.5 |
| C1J |
C1X |
H1XA |
109.4 |
109.5 |
| C1J |
C1X |
H1XB |
109.5 |
109.5 |
| H1K |
C1K |
H1KA |
109.5 |
109.5 |
| H1K |
C1K |
H1KB |
109.5 |
109.5 |
| H1KA |
C1K |
H1KB |
109.5 |
109.5 |
| H1X |
C1X |
H1XA |
109.5 |
109.5 |
| H1X |
C1X |
H1XB |
109.5 |
109.5 |
| H1XA |
C1X |
H1XB |
109.5 |
109.4 |
| C1I |
C1H |
C5 |
174.1 |
180.0 |
| C1H |
C5 |
C6 |
123.3 |
120.9 |
| C4 |
C5 |
C6 |
118.3 |
118.2 |
| C5 |
C6 |
N1 |
118.7 |
118.9 |
| C5 |
C6 |
N1G |
123.6 |
120.6 |
| C1Y |
C4 |
N3 |
118.7 |
120.5 |
| C4 |
N3 |
C2 |
121.0 |
121.1 |
| H1Y |
C1Y |
H1YA |
109.5 |
109.6 |
| H1Y |
C1Y |
H1YB |
109.5 |
109.4 |
| H1YA |
C1Y |
H1YB |
109.5 |
109.5 |
| N3 |
C2 |
N1Z |
119.8 |
119.0 |
| N3 |
C2 |
N1 |
120.3 |
122.0 |
| N1Z |
C2 |
N1 |
119.9 |
119.0 |
| C2 |
N1Z |
HN1Z |
109.5 |
119.9 |
| C2 |
N1Z |
HN1A |
109.5 |
120.0 |
| HN1Z |
N1Z |
HN1A |
109.5 |
120.1 |
| C6 |
N1G |
HN1G |
109.5 |
120.0 |
| C6 |
N1G |
HN1B |
109.5 |
120.0 |
| HN1G |
N1G |
HN1B |
109.4 |
120.1 |
Torsion Angles for 55V
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1P |
C1P |
O1O |
H1PA |
240.0 |
240.0 |
| H1P |
C1P |
O1O |
H1PB |
120.0 |
119.9 |
| H1PA |
C1P |
O1O |
H1PB |
240.0 |
239.9 |
| C1P |
O1O |
C1N |
C1Q |
177.1 |
180.0 |
| O1O |
C1P |
H1P |
H1PA |
120.0 |
120.0 |
| O1O |
C1P |
H1P |
H1PB |
240.0 |
240.0 |
| H1P |
C1P |
O1O |
C1N |
264.2 |
300.0 |
| H1PA |
C1P |
H1P |
H1PB |
120.0 |
120.1 |
| O1O |
C1P |
H1PA |
H1P |
240.0 |
240.0 |
| O1O |
C1P |
H1PA |
H1PB |
120.0 |
120.0 |
| H1PA |
C1P |
O1O |
C1N |
24.2 |
60.0 |
| H1P |
C1P |
H1PA |
H1PB |
240.0 |
240.0 |
| O1O |
C1P |
H1PB |
H1P |
120.0 |
119.9 |
| O1O |
C1P |
H1PB |
H1PA |
240.0 |
240.0 |
| H1PB |
C1P |
O1O |
C1N |
144.3 |
180.0 |
| H1P |
C1P |
H1PB |
H1PA |
120.0 |
120.0 |
| C1N |
O1O |
C1P |
H1P |
264.2 |
300.0 |
| C1N |
O1O |
C1P |
H1PA |
24.2 |
60.0 |
| C1N |
O1O |
C1P |
H1PB |
144.3 |
180.0 |
| C1M |
C1N |
O1O |
C1Q |
180.0 |
180.2 |
| O1O |
C1N |
C1Q |
O1V |
1.8 |
0.0 |
| O1O |
C1N |
C1Q |
C1R |
180.0 |
180.0 |
| O1O |
C1N |
C1M |
C1Q |
180.0 |
179.8 |
| C1M |
C1N |
C1Q |
O1V |
181.8 |
179.8 |
| C1M |
C1N |
C1Q |
C1R |
360.0 |
359.8 |
| O1V |
C1Q |
C1N |
C1R |
181.9 |
180.0 |
| C1N |
C1Q |
O1V |
C1W |
278.2 |
90.0 |
| C1N |
C1Q |
C1R |
O1T |
180.3 |
180.0 |
| C1L |
C1M |
C1N |
C1Q |
360.0 |
0.2 |
| C1M |
C1L |
C1S |
H1S |
180.5 |
180.0 |
| H1M |
C1M |
C1N |
C1Q |
180.0 |
180.2 |
| H1M |
C1M |
C1L |
C1S |
179.8 |
180.0 |
| C1N |
C1Q |
O1V |
C1R |
178.1 |
180.0 |
| O1V |
C1Q |
C1R |
O1T |
358.5 |
360.0 |
| C1Q |
O1V |
C1W |
H1W |
264.6 |
180.0 |
| C1Q |
O1V |
C1W |
H1WA |
24.6 |
300.0 |
| C1Q |
O1V |
C1W |
H1WB |
144.6 |
60.0 |
| C1N |
C1Q |
C1R |
O1V |
181.8 |
180.0 |
| C1R |
C1Q |
O1V |
C1W |
100.1 |
270.0 |
| C1Q |
C1R |
O1T |
C1U |
168.1 |
180.0 |
| C1W |
O1V |
C1Q |
C1R |
100.1 |
270.0 |
| H1W |
C1W |
O1V |
H1WA |
240.0 |
240.0 |
| H1W |
C1W |
O1V |
H1WB |
120.0 |
120.0 |
| H1WA |
C1W |
O1V |
H1WB |
240.0 |
240.0 |
| O1V |
C1W |
H1W |
H1WA |
120.0 |
120.0 |
| O1V |
C1W |
H1W |
H1WB |
240.0 |
240.0 |
| H1WA |
C1W |
H1W |
H1WB |
120.0 |
120.0 |
| O1V |
C1W |
H1WA |
H1W |
240.0 |
240.0 |
| O1V |
C1W |
H1WA |
H1WB |
120.0 |
120.0 |
| H1W |
C1W |
H1WA |
H1WB |
240.0 |
240.0 |
| O1V |
C1W |
H1WB |
H1W |
120.0 |
120.0 |
| O1V |
C1W |
H1WB |
H1WA |
240.0 |
240.0 |
| H1W |
C1W |
H1WB |
H1WA |
120.0 |
120.0 |
| C1M |
C1L |
C1S |
C1R |
0.5 |
359.8 |
| C1R |
O1T |
C1U |
H1U |
291.7 |
180.0 |
| C1R |
O1T |
C1U |
H1UA |
51.7 |
300.0 |
| C1R |
O1T |
C1U |
H1UB |
171.7 |
60.0 |
| H1U |
C1U |
O1T |
H1UA |
240.0 |
240.0 |
| H1U |
C1U |
O1T |
H1UB |
120.0 |
120.1 |
| H1UA |
C1U |
O1T |
H1UB |
240.0 |
240.0 |
| O1T |
C1U |
H1U |
H1UA |
120.0 |
119.9 |
| O1T |
C1U |
H1U |
H1UB |
240.0 |
240.0 |
| H1UA |
C1U |
H1U |
H1UB |
120.0 |
120.1 |
| O1T |
C1U |
H1UA |
H1U |
240.0 |
240.0 |
| O1T |
C1U |
H1UA |
H1UB |
120.0 |
119.9 |
| H1U |
C1U |
H1UA |
H1UB |
240.1 |
239.9 |
| O1T |
C1U |
H1UB |
H1U |
120.0 |
120.0 |
| O1T |
C1U |
H1UB |
H1UA |
240.0 |
240.1 |
| H1U |
C1U |
H1UB |
H1UA |
119.9 |
120.0 |
| C1S |
C1L |
C1M |
H1M |
179.8 |
180.0 |
| C1J |
C1L |
C1M |
H1M |
0.5 |
0.0 |
| C1J |
C1L |
C1S |
H1S |
359.9 |
360.0 |
| C1X |
C1J |
C1K |
C1I |
118.8 |
120.0 |
| C1K |
C1J |
C1I |
C1H |
304.7 |
20.7 |
| C1K |
C1J |
C1X |
H1X |
207.4 |
180.0 |
| C1K |
C1J |
C1X |
H1XA |
327.4 |
300.0 |
| C1K |
C1J |
C1X |
H1XB |
87.4 |
60.0 |
| C1K |
C1J |
C1I |
C1X |
118.8 |
120.0 |
| C1I |
C1J |
C1X |
H1X |
320.5 |
300.0 |
| C1I |
C1J |
C1X |
H1XA |
80.5 |
60.1 |
| C1I |
C1J |
C1X |
H1XB |
200.5 |
180.0 |
| C1J |
C1I |
C1H |
C5 |
352.2 |
165.2 |
| C1K |
C1J |
C1X |
C1I |
246.9 |
239.9 |
| C1X |
C1J |
C1I |
C1H |
186.0 |
260.6 |
| H1X |
C1X |
C1J |
H1XA |
240.0 |
240.0 |
| H1X |
C1X |
C1J |
H1XB |
120.0 |
120.0 |
| H1XA |
C1X |
C1J |
H1XB |
240.0 |
240.0 |
| H1K |
C1K |
C1J |
C1I |
118.8 |
180.0 |
| H1K |
C1K |
C1J |
C1X |
237.6 |
300.0 |
| H1KA |
C1K |
H1K |
H1KB |
120.0 |
120.0 |
| H1KA |
C1K |
C1J |
C1I |
238.7 |
300.0 |
| H1KA |
C1K |
C1J |
C1X |
357.6 |
60.0 |
| H1K |
C1K |
H1KA |
H1KB |
240.0 |
240.0 |
| H1KB |
C1K |
C1J |
C1I |
358.8 |
60.0 |
| H1KB |
C1K |
C1J |
C1X |
117.6 |
180.0 |
| H1K |
C1K |
H1KB |
H1KA |
120.0 |
120.0 |
| H1X |
C1X |
C1J |
C1I |
320.5 |
300.0 |
| C1J |
C1X |
H1X |
H1XA |
120.0 |
120.0 |
| C1J |
C1X |
H1X |
H1XB |
240.0 |
240.0 |
| H1XA |
C1X |
H1X |
H1XB |
120.0 |
119.9 |
| H1XA |
C1X |
C1J |
C1I |
80.5 |
60.1 |
| C1J |
C1X |
H1XA |
H1X |
240.0 |
240.0 |
| C1J |
C1X |
H1XA |
H1XB |
120.0 |
120.0 |
| H1X |
C1X |
H1XA |
H1XB |
240.0 |
240.0 |
| H1XB |
C1X |
C1J |
C1I |
200.5 |
180.0 |
| C1J |
C1X |
H1XB |
H1X |
120.0 |
120.0 |
| C1J |
C1X |
H1XB |
H1XA |
240.0 |
240.0 |
| H1X |
C1X |
H1XB |
H1XA |
120.0 |
120.0 |
| C1I |
C1H |
C5 |
C6 |
180.6 |
234.2 |
| C4 |
C5 |
C1H |
C6 |
180.5 |
180.2 |
| C1H |
C5 |
C6 |
N1 |
180.1 |
179.8 |
| C1H |
C5 |
C6 |
N1G |
0.3 |
359.9 |
| C1H |
C5 |
C4 |
C6 |
179.5 |
179.8 |
| C4 |
C5 |
C6 |
N1 |
359.5 |
359.5 |
| C4 |
C5 |
C6 |
N1G |
179.8 |
179.7 |
| C5 |
C6 |
N1G |
HN1G |
142.9 |
0.0 |
| C5 |
C6 |
N1G |
HN1B |
262.9 |
180.0 |
| C1Y |
C4 |
C5 |
C6 |
180.4 |
180.3 |
| C1Y |
C4 |
N3 |
C2 |
180.2 |
180.0 |
| N3 |
C4 |
C5 |
C6 |
360.0 |
0.2 |
| C4 |
N3 |
C2 |
N1Z |
179.9 |
180.0 |
| C4 |
N3 |
C2 |
N1 |
359.2 |
359.9 |
| H1Y |
C1Y |
C4 |
N3 |
90.0 |
270.0 |
| H1YA |
C1Y |
H1Y |
H1YB |
120.0 |
120.0 |
| H1YA |
C1Y |
C4 |
N3 |
210.0 |
30.1 |
| H1Y |
C1Y |
H1YA |
H1YB |
240.0 |
240.0 |
| H1YB |
C1Y |
C4 |
N3 |
329.9 |
150.1 |
| H1Y |
C1Y |
H1YB |
H1YA |
120.0 |
120.1 |
| N1Z |
C2 |
N3 |
N1 |
180.7 |
180.1 |
| N3 |
C2 |
N1Z |
HN1Z |
44.3 |
359.9 |
| N3 |
C2 |
N1Z |
HN1A |
164.3 |
180.0 |
| N3 |
C2 |
N1Z |
N1 |
179.3 |
179.9 |
| HN1Z |
N1Z |
C2 |
HN1A |
240.0 |
180.0 |
| C5 |
C6 |
N1 |
C2 |
0.4 |
0.4 |
| N3 |
C2 |
N1 |
N1Z |
180.7 |
180.1 |
| N1 |
C2 |
N1Z |
HN1Z |
225.0 |
180.1 |
| N1 |
C2 |
N1Z |
HN1A |
345.0 |
0.1 |
| HN1Z |
N1Z |
C2 |
N1 |
225.0 |
180.1 |
| C2 |
N1Z |
HN1Z |
HN1A |
120.0 |
180.0 |
| HN1A |
N1Z |
C2 |
N1 |
345.0 |
0.1 |
| C2 |
N1Z |
HN1A |
HN1Z |
240.0 |
180.0 |
| C5 |
C6 |
N1 |
N1G |
180.2 |
180.2 |
| C5 |
C6 |
N1G |
N1 |
179.8 |
179.8 |
| HN1G |
N1G |
C6 |
HN1B |
240.0 |
180.0 |
| C6 |
N1G |
HN1G |
HN1B |
120.0 |
180.0 |
| C6 |
N1G |
HN1B |
HN1G |
240.0 |
180.0 |