PDB Chemical Component 55E
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 55E
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O3 |
C2 |
1.250 |
1.218 |
| N4 |
C2 |
1.349 |
1.339 |
| C2 |
N1 |
1.354 |
1.337 |
| N4 |
C5 |
1.348 |
1.313 |
| C6 |
C5 |
1.480 |
1.467 |
| C5 |
C7 |
1.380 |
1.516 |
| C15 |
C6 |
1.387 |
1.401 |
| C6 |
C21 |
1.387 |
1.402 |
| C19 |
C21 |
1.392 |
1.365 |
| C21 |
H21 |
1.080 |
1.080 |
| C17 |
C19 |
1.386 |
1.392 |
| C19 |
C20 |
1.507 |
1.508 |
| C20 |
H20 |
1.100 |
1.090 |
| C20 |
H20A |
1.100 |
1.090 |
| C20 |
H20B |
1.100 |
1.090 |
| C16 |
C17 |
1.390 |
1.391 |
| O18 |
C17 |
1.363 |
1.356 |
| O18 |
HO18 |
0.950 |
0.967 |
| C16 |
C15 |
1.386 |
1.365 |
| C16 |
H16 |
1.080 |
1.080 |
| C15 |
H15 |
1.080 |
1.080 |
| C7 |
C8 |
1.389 |
1.517 |
| C7 |
H7 |
1.100 |
1.089 |
| C7 |
H7A |
1.100 |
1.090 |
| N1 |
C8 |
1.354 |
1.311 |
| C8 |
C9 |
1.492 |
1.470 |
| C9 |
C10 |
1.394 |
1.400 |
| C9 |
C14 |
1.392 |
1.400 |
| C14 |
C13 |
1.396 |
1.378 |
| C14 |
H14 |
1.080 |
1.079 |
| C13 |
C12 |
1.394 |
1.384 |
| C13 |
H13 |
1.081 |
1.080 |
| C11 |
C12 |
1.392 |
1.384 |
| C12 |
H12 |
1.080 |
1.080 |
| C10 |
C11 |
1.395 |
1.379 |
| C11 |
H11 |
1.080 |
1.080 |
| C10 |
H10 |
1.080 |
1.080 |
Bond Angles for 55E
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3 |
C2 |
N1 |
120.5 |
117.6 |
| N4 |
C2 |
N1 |
120.6 |
124.8 |
| C2 |
N1 |
C8 |
120.3 |
122.1 |
| N4 |
C5 |
C7 |
119.8 |
117.4 |
| C6 |
C5 |
C7 |
120.2 |
121.3 |
| C5 |
C7 |
C8 |
119.0 |
116.2 |
| C5 |
C7 |
H7 |
106.4 |
108.2 |
| C5 |
C7 |
H7A |
104.2 |
108.1 |
| C6 |
C21 |
H21 |
120.0 |
120.1 |
| C19 |
C21 |
H21 |
120.0 |
120.1 |
| C19 |
C20 |
H20 |
109.5 |
109.5 |
| C19 |
C20 |
H20A |
109.4 |
109.4 |
| C19 |
C20 |
H20B |
109.5 |
109.5 |
| H20 |
C20 |
H20A |
109.5 |
109.5 |
| H20 |
C20 |
H20B |
109.5 |
109.5 |
| H20A |
C20 |
H20B |
109.5 |
109.5 |
| C15 |
C16 |
H16 |
119.9 |
120.0 |
| C16 |
C15 |
H15 |
120.1 |
120.1 |
| C8 |
C7 |
H7 |
106.4 |
108.2 |
| C8 |
C7 |
H7A |
104.2 |
108.1 |
| C7 |
C8 |
C9 |
119.0 |
121.3 |
| H7 |
C7 |
H7A |
117.2 |
107.8 |
| N1 |
C8 |
C9 |
121.4 |
121.3 |
| C8 |
C9 |
C10 |
119.6 |
120.2 |
| C8 |
C9 |
C14 |
120.7 |
120.2 |
| C14 |
C9 |
C10 |
119.6 |
119.6 |
| C9 |
C10 |
C11 |
120.5 |
119.8 |
| C9 |
C10 |
H10 |
119.8 |
120.1 |
| C9 |
C14 |
C13 |
119.8 |
119.8 |
| C9 |
C14 |
H14 |
120.1 |
120.1 |
| C13 |
C14 |
H14 |
120.1 |
120.2 |
| C14 |
C13 |
C12 |
120.6 |
120.2 |
| C14 |
C13 |
H13 |
119.7 |
119.8 |
| C12 |
C13 |
H13 |
119.7 |
119.9 |
| C13 |
C12 |
H12 |
120.3 |
119.8 |
| C11 |
C12 |
H12 |
120.3 |
119.8 |
| C10 |
C11 |
H11 |
120.0 |
119.9 |
Torsion Angles for 55E
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N4 |
C2 |
O3 |
N1 |
180.1 |
180.2 |
| O3 |
C2 |
N1 |
C8 |
180.0 |
179.7 |
| O3 |
C2 |
N4 |
N1 |
179.9 |
179.7 |
| N4 |
C2 |
N1 |
C8 |
359.9 |
359.5 |
| C2 |
N1 |
C8 |
C9 |
179.4 |
180.3 |
| C5 |
N4 |
C2 |
N1 |
0.6 |
0.2 |
| C6 |
C5 |
N4 |
C7 |
183.3 |
180.0 |
| N4 |
C5 |
C7 |
C8 |
1.8 |
359.9 |
| N4 |
C5 |
C7 |
H7 |
121.8 |
121.8 |
| N4 |
C5 |
C7 |
H7A |
246.3 |
238.2 |
| N4 |
C5 |
C6 |
C7 |
176.7 |
180.0 |
| C6 |
C5 |
C7 |
C8 |
178.5 |
180.0 |
| C6 |
C5 |
C7 |
H7 |
298.5 |
301.8 |
| C6 |
C5 |
C7 |
H7A |
63.0 |
58.3 |
| C8 |
C7 |
C5 |
H7 |
240.0 |
238.2 |
| C8 |
C7 |
C5 |
H7A |
115.5 |
121.7 |
| C5 |
C7 |
C8 |
C9 |
179.7 |
180.0 |
| H7 |
C7 |
C5 |
H7A |
235.5 |
243.5 |
| C15 |
C6 |
C5 |
C7 |
191.4 |
359.7 |
| C15 |
C6 |
C21 |
H21 |
178.3 |
180.3 |
| C21 |
C6 |
C5 |
C7 |
7.9 |
180.0 |
| C19 |
C21 |
C6 |
H21 |
180.0 |
180.0 |
| C6 |
C21 |
C19 |
H21 |
180.0 |
180.0 |
| C17 |
C19 |
C21 |
H21 |
180.7 |
180.0 |
| C17 |
C19 |
C20 |
H20 |
330.4 |
270.0 |
| C17 |
C19 |
C20 |
H20A |
90.4 |
30.0 |
| C17 |
C19 |
C20 |
H20B |
210.4 |
150.0 |
| C20 |
C19 |
C21 |
H21 |
0.8 |
0.0 |
| H20 |
C20 |
C19 |
H20A |
240.0 |
240.0 |
| H20 |
C20 |
C19 |
H20B |
120.0 |
120.0 |
| H20A |
C20 |
C19 |
H20B |
240.0 |
240.0 |
| C19 |
C20 |
H20 |
H20A |
120.0 |
120.0 |
| C19 |
C20 |
H20 |
H20B |
240.0 |
240.0 |
| H20A |
C20 |
H20 |
H20B |
120.0 |
120.0 |
| C19 |
C20 |
H20A |
H20 |
239.9 |
240.0 |
| C19 |
C20 |
H20A |
H20B |
120.0 |
120.0 |
| H20 |
C20 |
H20A |
H20B |
240.0 |
240.0 |
| C19 |
C20 |
H20B |
H20 |
120.1 |
120.0 |
| C19 |
C20 |
H20B |
H20A |
240.0 |
240.0 |
| H20 |
C20 |
H20B |
H20A |
120.0 |
120.1 |
| H16 |
C16 |
C15 |
H15 |
359.4 |
359.8 |
| H15 |
C15 |
C16 |
H16 |
359.4 |
359.8 |
| C2 |
N1 |
C8 |
C7 |
0.4 |
0.5 |
| C5 |
C7 |
C8 |
H7 |
120.0 |
121.8 |
| C5 |
C7 |
C8 |
H7A |
244.6 |
238.3 |
| H7 |
C7 |
C8 |
H7A |
124.6 |
116.5 |
| N1 |
C8 |
C7 |
C9 |
179.0 |
179.8 |
| C7 |
C8 |
C9 |
C10 |
119.1 |
180.0 |
| C7 |
C8 |
C9 |
C14 |
300.4 |
0.3 |
| C5 |
C7 |
H7 |
C8 |
232.2 |
233.3 |
| C5 |
C7 |
H7 |
H7A |
116.1 |
116.7 |
| C8 |
C7 |
H7 |
H7A |
243.9 |
243.3 |
| H7 |
C7 |
C8 |
C9 |
59.7 |
58.2 |
| C5 |
C7 |
H7A |
C8 |
125.4 |
126.6 |
| C5 |
C7 |
H7A |
H7 |
242.7 |
243.3 |
| C8 |
C7 |
H7A |
H7 |
117.3 |
116.7 |
| H7A |
C7 |
C8 |
C9 |
295.2 |
301.7 |
| N1 |
C8 |
C7 |
H7 |
238.8 |
238.0 |
| N1 |
C8 |
C7 |
H7A |
114.2 |
121.5 |
| C7 |
C8 |
N1 |
C9 |
181.0 |
180.2 |
| N1 |
C8 |
C9 |
C10 |
300.1 |
0.3 |
| N1 |
C8 |
C9 |
C14 |
121.5 |
180.6 |
| C9 |
C8 |
C7 |
H7 |
59.7 |
58.2 |
| C9 |
C8 |
C7 |
H7A |
295.2 |
301.7 |
| C14 |
C9 |
C8 |
C10 |
181.4 |
180.3 |
| C8 |
C9 |
C10 |
C11 |
180.5 |
179.7 |
| C8 |
C9 |
C10 |
H10 |
0.5 |
359.9 |
| C8 |
C9 |
C14 |
C13 |
179.5 |
180.0 |
| C8 |
C9 |
C14 |
H14 |
359.4 |
359.9 |
| C8 |
C9 |
C10 |
C14 |
181.4 |
180.3 |
| C10 |
C9 |
C14 |
C13 |
0.9 |
0.3 |
| C10 |
C9 |
C14 |
H14 |
180.8 |
180.2 |
| C9 |
C10 |
C11 |
H11 |
180.5 |
180.2 |
| C8 |
C9 |
C14 |
C10 |
178.6 |
179.7 |
| C14 |
C9 |
C10 |
C11 |
359.2 |
359.4 |
| C14 |
C9 |
C10 |
H10 |
179.1 |
179.7 |
| C13 |
C14 |
C9 |
H14 |
180.0 |
180.1 |
| C9 |
C14 |
C13 |
C12 |
359.4 |
0.0 |
| C9 |
C14 |
C13 |
H13 |
179.5 |
179.9 |
| C13 |
C14 |
C9 |
C10 |
0.9 |
0.3 |
| C9 |
C14 |
C13 |
H14 |
180.0 |
179.9 |
| C12 |
C13 |
C14 |
H13 |
180.0 |
180.1 |
| C14 |
C13 |
C12 |
H12 |
180.3 |
180.0 |
| H14 |
C14 |
C9 |
C10 |
180.8 |
180.2 |
| C9 |
C14 |
H14 |
C13 |
180.0 |
180.1 |
| H14 |
C14 |
C13 |
C12 |
179.5 |
180.1 |
| H14 |
C14 |
C13 |
H13 |
359.5 |
360.0 |
| C12 |
C13 |
C14 |
H14 |
179.5 |
180.1 |
| C14 |
C13 |
C12 |
H13 |
180.0 |
179.9 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
| H13 |
C13 |
C14 |
H14 |
359.5 |
-0.0 |
| C14 |
C13 |
H13 |
C12 |
180.0 |
180.1 |
| H13 |
C13 |
C12 |
H12 |
0.2 |
0.1 |
| C9 |
C10 |
C11 |
C12 |
0.5 |
0.6 |
| C11 |
C12 |
C13 |
H13 |
180.2 |
180.1 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
| H12 |
C12 |
C13 |
H13 |
0.2 |
0.1 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
180.2 |
| C10 |
C11 |
C12 |
H12 |
179.8 |
179.7 |
| H11 |
C11 |
C12 |
H12 |
359.8 |
0.0 |
| C9 |
C10 |
H10 |
C11 |
180.0 |
179.8 |
| H10 |
C10 |
C11 |
H11 |
0.5 |
0.0 |