PDB Chemical Component 548
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 548
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.499 |
1.506 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.090 |
| F1 |
C18 |
1.361 |
1.399 |
| N1 |
C3 |
1.352 |
1.319 |
| N1 |
C4 |
1.348 |
1.320 |
| C14 |
CL1 |
1.731 |
1.736 |
| C2 |
C3 |
1.391 |
1.380 |
| C2 |
C6 |
1.404 |
1.400 |
| F2 |
C18 |
1.361 |
1.400 |
| C7 |
N2 |
1.321 |
1.320 |
| N2 |
C8 |
1.369 |
1.328 |
| C3 |
H3 |
1.080 |
1.080 |
| F3 |
C18 |
1.361 |
1.399 |
| C10 |
N3 |
1.420 |
1.386 |
| N3 |
C7 |
1.391 |
1.357 |
| N3 |
C9 |
1.384 |
1.382 |
| C4 |
C5 |
1.382 |
1.378 |
| C4 |
H4 |
1.080 |
1.080 |
| C15 |
N4 |
1.416 |
1.358 |
| N4 |
C16 |
1.296 |
1.307 |
| C5 |
C6 |
1.398 |
1.401 |
| C5 |
H5 |
1.080 |
1.081 |
| C6 |
C7 |
1.460 |
1.477 |
| C9 |
C8 |
1.380 |
1.381 |
| C8 |
C19 |
1.481 |
1.508 |
| C9 |
C16 |
1.435 |
1.410 |
| C11 |
C10 |
1.401 |
1.387 |
| C10 |
C15 |
1.413 |
1.407 |
| C12 |
C11 |
1.406 |
1.380 |
| C11 |
H11 |
1.080 |
1.081 |
| C18 |
C12 |
1.511 |
1.507 |
| C12 |
C13 |
1.399 |
1.387 |
| C13 |
C14 |
1.398 |
1.378 |
| C13 |
H13 |
1.080 |
1.081 |
| C14 |
C15 |
1.406 |
1.400 |
| C16 |
C17 |
1.504 |
1.507 |
| C17 |
H17 |
1.100 |
1.089 |
| C17 |
H17A |
1.100 |
1.090 |
| C17 |
H17B |
1.100 |
1.090 |
| C19 |
H19 |
1.100 |
1.090 |
| C19 |
H19A |
1.100 |
1.090 |
| C19 |
H19B |
1.101 |
1.090 |
Bond Angles for 548
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
109.5 |
109.5 |
| C2 |
C1 |
H1A |
109.5 |
109.5 |
| C2 |
C1 |
H1B |
109.5 |
109.5 |
| C1 |
C2 |
C3 |
120.3 |
120.5 |
| C1 |
C2 |
C6 |
122.6 |
120.5 |
| H1 |
C1 |
H1A |
109.5 |
109.4 |
| H1 |
C1 |
H1B |
109.5 |
109.5 |
| H1A |
C1 |
H1B |
109.5 |
109.5 |
| F1 |
C18 |
F2 |
105.9 |
109.4 |
| F1 |
C18 |
F3 |
106.1 |
109.5 |
| F1 |
C18 |
C12 |
112.4 |
109.5 |
| C3 |
N1 |
C4 |
117.0 |
122.0 |
| N1 |
C3 |
C2 |
124.3 |
120.9 |
| N1 |
C3 |
H3 |
117.8 |
119.5 |
| N1 |
C4 |
C5 |
123.6 |
120.9 |
| N1 |
C4 |
H4 |
118.2 |
119.5 |
| C3 |
C2 |
C6 |
117.1 |
119.0 |
| C2 |
C3 |
H3 |
117.8 |
119.5 |
| C2 |
C6 |
C5 |
119.5 |
118.1 |
| C2 |
C6 |
C7 |
121.8 |
120.9 |
| F2 |
C18 |
F3 |
106.0 |
109.4 |
| F2 |
C18 |
C12 |
113.6 |
109.5 |
| C7 |
N2 |
C8 |
106.9 |
109.9 |
| N2 |
C8 |
C19 |
119.2 |
126.1 |
| F3 |
C18 |
C12 |
112.2 |
109.5 |
| C7 |
N3 |
C9 |
106.7 |
107.0 |
| N3 |
C7 |
C6 |
127.4 |
125.5 |
| N3 |
C9 |
C8 |
105.9 |
106.3 |
| N3 |
C9 |
C16 |
120.3 |
119.7 |
| C5 |
C4 |
H4 |
118.2 |
119.5 |
| C4 |
C5 |
C6 |
118.5 |
119.0 |
| C4 |
C5 |
H5 |
120.8 |
120.5 |
| C15 |
N4 |
C16 |
120.2 |
121.4 |
| N4 |
C16 |
C9 |
120.7 |
120.8 |
| N4 |
C16 |
C17 |
118.4 |
119.6 |
| C6 |
C5 |
H5 |
120.8 |
120.5 |
| C5 |
C6 |
C7 |
118.7 |
121.0 |
| C9 |
C8 |
C19 |
130.7 |
126.0 |
| C8 |
C19 |
H19 |
109.5 |
109.4 |
| C8 |
C19 |
H19A |
109.5 |
109.5 |
| C8 |
C19 |
H19B |
109.5 |
109.5 |
| C9 |
C16 |
C17 |
120.9 |
119.6 |
| C11 |
C10 |
C15 |
120.4 |
119.9 |
| C10 |
C15 |
C14 |
118.3 |
119.3 |
| C12 |
C11 |
H11 |
119.6 |
120.0 |
| C12 |
C13 |
C14 |
120.4 |
120.5 |
| C12 |
C13 |
H13 |
119.8 |
119.7 |
| C14 |
C13 |
H13 |
119.8 |
119.8 |
| C13 |
C14 |
C15 |
121.2 |
119.9 |
| C16 |
C17 |
H17 |
109.5 |
109.5 |
| C16 |
C17 |
H17A |
109.5 |
109.5 |
| C16 |
C17 |
H17B |
109.5 |
109.4 |
| H17 |
C17 |
H17A |
109.5 |
109.5 |
| H17 |
C17 |
H17B |
109.4 |
109.5 |
| H17A |
C17 |
H17B |
109.5 |
109.4 |
| H19 |
C19 |
H19A |
109.5 |
109.5 |
| H19 |
C19 |
H19B |
109.5 |
109.4 |
| H19A |
C19 |
H19B |
109.5 |
109.5 |
Torsion Angles for 548
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C1 |
C2 |
H1A |
240.0 |
240.1 |
| H1 |
C1 |
C2 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H1B |
240.0 |
240.0 |
| N1 |
C3 |
C2 |
C1 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
C6 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
H3 |
0.1 |
359.9 |
| C1 |
C2 |
C6 |
C5 |
180.0 |
180.0 |
| C1 |
C2 |
C6 |
C7 |
0.0 |
0.0 |
| C2 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
| C2 |
C1 |
H1 |
H1B |
240.0 |
239.9 |
| H1 |
C1 |
C2 |
C3 |
90.0 |
90.1 |
| H1 |
C1 |
C2 |
C6 |
270.0 |
270.0 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
| C2 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
| C2 |
C1 |
H1A |
H1B |
120.0 |
120.1 |
| H1A |
C1 |
C2 |
C3 |
210.0 |
210.0 |
| H1A |
C1 |
C2 |
C6 |
30.0 |
30.0 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
| C2 |
C1 |
H1B |
H1 |
120.0 |
120.0 |
| C2 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1B |
C1 |
C2 |
C3 |
330.0 |
330.0 |
| H1B |
C1 |
C2 |
C6 |
150.0 |
150.0 |
| H1 |
C1 |
H1B |
H1A |
120.0 |
120.0 |
| F2 |
C18 |
F1 |
F3 |
112.3 |
240.0 |
| F2 |
C18 |
F1 |
C12 |
235.4 |
120.0 |
| F3 |
C18 |
F1 |
C12 |
123.0 |
240.0 |
| C1 |
C2 |
C3 |
N1 |
180.0 |
180.0 |
| C3 |
N1 |
C4 |
C5 |
0.0 |
359.9 |
| C3 |
N1 |
C4 |
H4 |
180.0 |
180.0 |
| N1 |
C3 |
C2 |
C6 |
0.0 |
0.0 |
| C2 |
C3 |
N1 |
H3 |
180.0 |
180.0 |
| C4 |
N1 |
C3 |
C2 |
360.0 |
0.0 |
| C4 |
N1 |
C3 |
H3 |
179.9 |
180.1 |
| C5 |
C4 |
N1 |
H4 |
180.0 |
179.9 |
| N1 |
C4 |
C5 |
C6 |
0.0 |
0.1 |
| N1 |
C4 |
C5 |
H5 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
H1 |
90.0 |
90.1 |
| C3 |
C2 |
C1 |
H1A |
210.0 |
210.0 |
| C3 |
C2 |
C1 |
H1B |
330.0 |
330.0 |
| C1 |
C2 |
C3 |
C6 |
180.0 |
180.0 |
| C2 |
C3 |
N1 |
C4 |
360.0 |
0.0 |
| N1 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C3 |
C2 |
C6 |
C5 |
0.0 |
360.0 |
| C3 |
C2 |
C6 |
C7 |
180.0 |
180.0 |
| C6 |
C2 |
C1 |
H1 |
270.0 |
270.0 |
| C6 |
C2 |
C1 |
H1A |
30.0 |
30.0 |
| C6 |
C2 |
C1 |
H1B |
150.0 |
150.0 |
| C1 |
C2 |
C6 |
C3 |
180.0 |
180.0 |
| C6 |
C2 |
C3 |
H3 |
180.1 |
180.0 |
| N3 |
C7 |
C6 |
C2 |
71.0 |
268.7 |
| C4 |
C5 |
C6 |
C2 |
360.0 |
360.0 |
| C2 |
C6 |
C5 |
H5 |
180.0 |
180.1 |
| C5 |
C6 |
C2 |
C7 |
180.0 |
180.0 |
| F1 |
C18 |
F2 |
F3 |
247.6 |
120.0 |
| F1 |
C18 |
F2 |
C12 |
123.9 |
240.0 |
| F3 |
C18 |
F2 |
C12 |
236.3 |
120.0 |
| C2 |
C6 |
C7 |
N2 |
251.0 |
88.7 |
| C7 |
N2 |
C8 |
C19 |
180.0 |
180.0 |
| N3 |
C9 |
C8 |
N2 |
360.0 |
360.0 |
| C9 |
C8 |
N2 |
C19 |
180.0 |
180.1 |
| N2 |
C8 |
C19 |
H19 |
0.0 |
90.1 |
| N2 |
C8 |
C19 |
H19A |
120.0 |
210.1 |
| N2 |
C8 |
C19 |
H19B |
240.0 |
330.1 |
| H3 |
C3 |
N1 |
C4 |
179.9 |
180.1 |
| N1 |
C3 |
H3 |
C2 |
180.0 |
180.0 |
| H3 |
C3 |
C2 |
C6 |
180.1 |
180.0 |
| F1 |
C18 |
F3 |
F2 |
112.3 |
240.0 |
| F1 |
C18 |
F3 |
C12 |
236.9 |
120.0 |
| F2 |
C18 |
F3 |
C12 |
124.6 |
240.0 |
| C10 |
N3 |
C9 |
C16 |
359.9 |
360.0 |
| C2 |
C6 |
C7 |
N3 |
71.0 |
268.7 |
| N3 |
C7 |
N2 |
C8 |
0.0 |
360.0 |
| C7 |
N3 |
C9 |
C8 |
0.0 |
360.0 |
| C7 |
N3 |
C9 |
C16 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
N3 |
251.0 |
88.6 |
| C9 |
N3 |
C7 |
C6 |
180.0 |
180.0 |
| N4 |
C16 |
C9 |
N3 |
0.0 |
0.1 |
| N3 |
C9 |
C8 |
C19 |
180.0 |
180.1 |
| N3 |
C9 |
C16 |
C17 |
180.0 |
179.9 |
| N1 |
C4 |
C5 |
H4 |
180.0 |
180.1 |
| C2 |
C6 |
C5 |
C4 |
360.0 |
360.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
| C4 |
C5 |
C6 |
C7 |
180.0 |
180.0 |
| N1 |
C4 |
H4 |
C5 |
180.0 |
179.9 |
| H4 |
C4 |
C5 |
C6 |
180.0 |
179.9 |
| H4 |
C4 |
C5 |
H5 |
360.0 |
359.8 |
| C15 |
N4 |
C16 |
C9 |
0.0 |
359.9 |
| C15 |
N4 |
C16 |
C17 |
180.0 |
180.0 |
| N3 |
C9 |
C16 |
N4 |
0.0 |
0.1 |
| C9 |
C16 |
N4 |
C17 |
180.0 |
179.9 |
| N4 |
C16 |
C17 |
H17 |
360.0 |
359.9 |
| N4 |
C16 |
C17 |
H17A |
120.0 |
120.0 |
| N4 |
C16 |
C17 |
H17B |
240.0 |
240.0 |
| C2 |
C6 |
C5 |
C7 |
180.0 |
180.0 |
| N3 |
C7 |
C6 |
C5 |
251.0 |
88.6 |
| C6 |
C5 |
C4 |
H4 |
180.0 |
179.9 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
| H5 |
C5 |
C4 |
H4 |
360.0 |
359.8 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.1 |
| H5 |
C5 |
C6 |
C7 |
360.0 |
0.1 |
| C2 |
C6 |
C7 |
C5 |
180.0 |
180.0 |
| C6 |
C7 |
N2 |
C8 |
180.0 |
180.0 |
| C6 |
C7 |
N3 |
C9 |
180.0 |
180.0 |
| C7 |
C6 |
C5 |
H5 |
360.0 |
0.1 |
| N2 |
C8 |
C9 |
C19 |
180.0 |
179.9 |
| N3 |
C9 |
C8 |
C16 |
180.0 |
180.0 |
| N4 |
C16 |
C9 |
C8 |
180.0 |
180.1 |
| C9 |
C8 |
C19 |
H19 |
180.0 |
270.0 |
| C9 |
C8 |
C19 |
H19A |
300.0 |
30.0 |
| C9 |
C8 |
C19 |
H19B |
60.0 |
150.0 |
| H19 |
C19 |
C8 |
H19A |
240.0 |
240.0 |
| H19 |
C19 |
C8 |
H19B |
120.0 |
119.9 |
| H19A |
C19 |
C8 |
H19B |
240.0 |
239.9 |
| N3 |
C9 |
C16 |
C8 |
180.0 |
180.0 |
| N4 |
C16 |
C9 |
C17 |
180.0 |
180.1 |
| C16 |
C9 |
C8 |
C19 |
0.0 |
0.1 |
| C9 |
C16 |
C17 |
H17 |
180.0 |
180.1 |
| C9 |
C16 |
C17 |
H17A |
300.0 |
300.2 |
| C9 |
C16 |
C17 |
H17B |
60.0 |
60.1 |
| C11 |
C10 |
C15 |
C14 |
360.0 |
360.0 |
| C10 |
C15 |
N4 |
C16 |
0.0 |
0.0 |
| C13 |
C14 |
C15 |
C10 |
0.0 |
0.0 |
| F1 |
C18 |
C12 |
C11 |
35.9 |
89.9 |
| F2 |
C18 |
C12 |
C11 |
156.2 |
330.0 |
| F3 |
C18 |
C12 |
C11 |
276.4 |
210.0 |
| C12 |
C11 |
C10 |
C15 |
0.0 |
0.0 |
| H11 |
C11 |
C10 |
C15 |
180.0 |
180.0 |
| F1 |
C18 |
C12 |
F2 |
239.7 |
120.0 |
| F1 |
C18 |
C12 |
F3 |
119.5 |
239.9 |
| F2 |
C18 |
C12 |
F3 |
239.8 |
120.0 |
| C18 |
C12 |
C11 |
H11 |
6.7 |
0.0 |
| C18 |
C12 |
C13 |
H13 |
353.1 |
359.9 |
| F1 |
C18 |
C12 |
C13 |
222.8 |
270.0 |
| F2 |
C18 |
C12 |
C13 |
343.0 |
150.0 |
| F3 |
C18 |
C12 |
C13 |
103.3 |
30.0 |
| C13 |
C12 |
C11 |
H11 |
180.0 |
180.0 |
| C14 |
C13 |
C12 |
H13 |
180.0 |
180.1 |
| C12 |
C13 |
C14 |
C15 |
0.0 |
360.0 |
| C10 |
C15 |
C14 |
C13 |
0.0 |
0.0 |
| C12 |
C13 |
C14 |
H13 |
180.0 |
179.9 |
| C12 |
C13 |
H13 |
C14 |
180.0 |
180.1 |
| H13 |
C13 |
C14 |
C15 |
180.1 |
180.1 |
| C14 |
C15 |
N4 |
C16 |
180.0 |
180.0 |
| C15 |
C14 |
C13 |
H13 |
180.1 |
180.1 |
| N4 |
C16 |
C17 |
C9 |
180.0 |
179.9 |
| H17 |
C17 |
C16 |
H17A |
240.0 |
239.9 |
| H17 |
C17 |
C16 |
H17B |
119.9 |
120.0 |
| H17A |
C17 |
C16 |
H17B |
240.0 |
240.1 |
| C16 |
C17 |
H17 |
H17A |
120.0 |
120.1 |
| C16 |
C17 |
H17 |
H17B |
240.0 |
240.0 |
| H17A |
C17 |
H17 |
H17B |
120.0 |
120.0 |
| C16 |
C17 |
H17A |
H17 |
240.0 |
240.0 |
| C16 |
C17 |
H17A |
H17B |
120.0 |
119.9 |
| H17 |
C17 |
H17A |
H17B |
240.0 |
240.0 |
| C16 |
C17 |
H17B |
H17 |
120.0 |
120.0 |
| C16 |
C17 |
H17B |
H17A |
240.0 |
240.0 |
| H17 |
C17 |
H17B |
H17A |
120.0 |
120.1 |
| C8 |
C19 |
H19 |
H19A |
120.0 |
120.0 |
| C8 |
C19 |
H19 |
H19B |
240.0 |
240.0 |
| H19A |
C19 |
H19 |
H19B |
120.0 |
120.1 |
| C8 |
C19 |
H19A |
H19 |
240.0 |
240.0 |
| C8 |
C19 |
H19A |
H19B |
120.0 |
120.0 |
| H19 |
C19 |
H19A |
H19B |
240.0 |
240.0 |
| C8 |
C19 |
H19B |
H19 |
120.0 |
119.9 |
| C8 |
C19 |
H19B |
H19A |
240.0 |
240.0 |
| H19 |
C19 |
H19B |
H19A |
120.0 |
120.0 |