PDB Chemical Component 53X
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 53X
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAR |
CAQ |
1.523 |
1.530 |
| CAQ |
NAG |
1.462 |
1.465 |
| NAG |
CAH |
1.325 |
1.365 |
| NAG |
CAE |
1.335 |
1.378 |
| CAH |
CAI |
1.396 |
1.355 |
| CAE |
CAD |
1.403 |
1.391 |
| CAE |
CAF |
1.386 |
1.406 |
| CAD |
CAC |
1.382 |
1.378 |
| CAI |
CAF |
1.396 |
1.471 |
| CAI |
CAJ |
1.513 |
1.484 |
| CAF |
CAA |
1.394 |
1.394 |
| CAC |
CAB |
1.395 |
1.387 |
| CAJ |
NAN |
1.305 |
1.317 |
| CAJ |
CAK |
1.403 |
1.403 |
| NAN |
NAM |
1.321 |
1.400 |
| CAA |
CAB |
1.396 |
1.368 |
| CAK |
CAL |
1.393 |
1.378 |
| NAM |
CAP |
1.456 |
1.465 |
| NAM |
CAL |
1.329 |
1.368 |
| CAL |
CAO |
1.506 |
1.470 |
| OAS |
CAO |
1.249 |
1.216 |
| CAO |
OAT |
1.264 |
1.349 |
| OAT |
H1 |
0.950 |
0.967 |
| CAK |
HAK1 |
1.080 |
1.080 |
| CAP |
HAP3 |
1.100 |
1.090 |
| CAP |
HAP2 |
1.100 |
1.091 |
| CAP |
HAP1 |
1.100 |
1.089 |
| CAH |
HAH1 |
1.079 |
1.080 |
| CAA |
HAA1 |
1.081 |
1.081 |
| CAB |
HAB1 |
1.080 |
1.079 |
| CAC |
HAC1 |
1.080 |
1.080 |
| CAD |
HAD1 |
1.080 |
1.081 |
| CAQ |
HAQ1 |
1.101 |
1.090 |
| CAQ |
HAQ2 |
1.100 |
1.090 |
| CAR |
HAR1 |
1.100 |
1.090 |
| CAR |
HAR3 |
1.100 |
1.089 |
| CAR |
HAR2 |
1.100 |
1.091 |
Bond Angles for 53X
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAR |
CAQ |
HAQ1 |
108.6 |
109.5 |
| CAR |
CAQ |
HAQ2 |
108.7 |
109.4 |
| NAG |
CAH |
HAH1 |
125.6 |
125.2 |
| CAH |
CAI |
CAF |
106.6 |
106.7 |
| CAE |
CAD |
HAD1 |
120.4 |
120.1 |
| CAD |
CAC |
HAC1 |
120.0 |
119.7 |
| CAI |
CAF |
CAA |
134.1 |
134.0 |
| CAF |
CAA |
CAB |
119.1 |
119.8 |
| CAF |
CAA |
HAA1 |
120.4 |
120.1 |
| CAC |
CAB |
HAB1 |
119.6 |
119.8 |
| CAJ |
CAK |
HAK1 |
127.7 |
126.1 |
| CAB |
CAA |
HAA1 |
120.4 |
120.1 |
| CAA |
CAB |
HAB1 |
119.6 |
119.8 |
| NAM |
CAP |
HAP3 |
109.5 |
109.5 |
| NAM |
CAP |
HAP2 |
109.5 |
109.4 |
| NAM |
CAP |
HAP1 |
109.5 |
109.5 |
| OAS |
CAO |
OAT |
121.2 |
120.0 |
| CAO |
OAT |
H1 |
109.5 |
117.0 |
| HAP3 |
CAP |
HAP2 |
109.4 |
109.5 |
| HAP3 |
CAP |
HAP1 |
109.4 |
109.5 |
| HAP2 |
CAP |
HAP1 |
109.5 |
109.5 |
| HAQ1 |
CAQ |
HAQ2 |
109.4 |
109.5 |
| HAR1 |
CAR |
HAR3 |
109.4 |
109.5 |
| HAR1 |
CAR |
HAR2 |
109.5 |
109.4 |
| HAR3 |
CAR |
HAR2 |
109.5 |
109.5 |
Torsion Angles for 53X
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HAQ1 |
CAQ |
CAR |
HAQ2 |
241.0 |
119.9 |
| CAQ |
NAG |
CAH |
HAH1 |
359.3 |
0.0 |
| CAE |
NAG |
CAH |
HAH1 |
180.1 |
180.3 |
| NAG |
CAE |
CAD |
HAD1 |
359.8 |
359.5 |
| CAH |
CAI |
CAF |
CAA |
180.0 |
179.8 |
| CAE |
CAD |
CAC |
HAC1 |
180.6 |
180.0 |
| CAE |
CAF |
CAA |
HAA1 |
179.9 |
180.0 |
| CAD |
CAC |
CAB |
HAB1 |
179.7 |
180.0 |
| CAI |
CAF |
CAA |
CAB |
180.1 |
180.0 |
| CAI |
CAF |
CAA |
HAA1 |
0.1 |
359.9 |
| CAI |
CAJ |
CAK |
HAK1 |
359.9 |
359.9 |
| CAB |
CAA |
CAF |
HAA1 |
180.0 |
180.1 |
| CAF |
CAA |
CAB |
HAB1 |
180.1 |
180.0 |
| CAC |
CAB |
CAA |
HAA1 |
180.1 |
180.0 |
| CAA |
CAB |
CAC |
HAB1 |
180.0 |
180.0 |
| NAN |
CAJ |
CAK |
HAK1 |
181.3 |
179.9 |
| NAN |
NAM |
CAP |
HAP3 |
0.0 |
270.1 |
| NAN |
NAM |
CAP |
HAP2 |
120.0 |
30.0 |
| NAN |
NAM |
CAP |
HAP1 |
240.0 |
150.0 |
| CAF |
CAA |
CAB |
HAA1 |
180.0 |
179.9 |
| CAC |
CAB |
CAA |
HAB1 |
180.0 |
180.0 |
| HAP3 |
CAP |
NAM |
HAP2 |
240.0 |
240.0 |
| HAP3 |
CAP |
NAM |
HAP1 |
120.0 |
120.0 |
| HAP2 |
CAP |
NAM |
HAP1 |
240.0 |
240.0 |
| CAL |
CAO |
OAT |
H1 |
179.5 |
180.3 |
| OAS |
CAO |
OAT |
H1 |
360.0 |
359.9 |
| NAM |
CAP |
HAP3 |
HAP2 |
120.0 |
119.9 |
| NAM |
CAP |
HAP3 |
HAP1 |
240.0 |
240.0 |
| HAP2 |
CAP |
HAP3 |
HAP1 |
120.0 |
120.0 |
| NAM |
CAP |
HAP2 |
HAP3 |
240.0 |
240.0 |
| NAM |
CAP |
HAP2 |
HAP1 |
120.0 |
120.0 |
| HAP3 |
CAP |
HAP2 |
HAP1 |
240.1 |
239.9 |
| NAM |
CAP |
HAP1 |
HAP3 |
120.0 |
120.0 |
| NAM |
CAP |
HAP1 |
HAP2 |
240.0 |
240.0 |
| HAP3 |
CAP |
HAP1 |
HAP2 |
119.9 |
120.0 |
| HAH1 |
CAH |
CAI |
CAF |
179.8 |
180.0 |
| CAF |
CAA |
HAA1 |
CAB |
180.0 |
180.1 |
| HAA1 |
CAA |
CAB |
HAB1 |
0.1 |
0.1 |
| HAB1 |
CAB |
CAA |
HAA1 |
0.1 |
0.1 |
| HAC1 |
CAC |
CAB |
HAB1 |
359.7 |
360.0 |
| HAD1 |
CAD |
CAC |
HAC1 |
0.5 |
0.0 |
| CAR |
CAQ |
HAQ1 |
HAQ2 |
118.5 |
240.1 |
| CAR |
CAQ |
HAQ2 |
HAQ1 |
241.5 |
120.0 |
| HAR1 |
CAR |
CAQ |
HAQ1 |
300.5 |
59.9 |
| HAR1 |
CAR |
CAQ |
HAQ2 |
59.5 |
300.0 |
| HAR3 |
CAR |
HAR1 |
HAR2 |
120.0 |
120.0 |
| HAR3 |
CAR |
CAQ |
HAQ1 |
60.5 |
180.0 |
| HAR3 |
CAR |
CAQ |
HAQ2 |
179.5 |
60.0 |
| HAR1 |
CAR |
HAR3 |
HAR2 |
240.0 |
240.1 |
| HAR2 |
CAR |
CAQ |
HAQ1 |
180.5 |
300.0 |
| HAR2 |
CAR |
CAQ |
HAQ2 |
299.5 |
180.1 |
| HAR1 |
CAR |
HAR2 |
HAR3 |
120.0 |
120.0 |