PDB Chemical Component 53V

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 53V

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C6	1.420	1.409
C1	N2	1.356	1.328
C1	N9	1.350	1.383
C2	O17	1.512	1.430
C3	N4	1.351	1.326
C3	N7	1.331	1.383
C3	N2	1.328	1.325
C6	C10	1.412	1.432
C6	C5	1.413	1.395
C12	C13	1.523	1.529
C12	C14	1.510	1.508
C12	C11	1.468	1.471
C14	C15	1.394	1.382
C14	C19	1.408	1.381
C15	C16	1.391	1.389
C16	C17	1.408	1.384
C16	O17	1.409	1.359
C17	C18	1.423	1.393
C18	C25	1.409	1.484
C18	C19	1.422	1.393
C26	C20	1.535	1.507
C20	C21	1.409	1.380
C20	C25	1.417	1.393
C21	C22	1.396	1.383
C22	C23	1.409	1.384
C23	C24	1.410	1.379
C24	C27	1.526	1.507
C24	C25	1.426	1.394
C11	C10	1.205	1.175
C5	C8	1.571	1.506
C5	N4	1.339	1.323
C2	H2	1.100	1.089
C2	H2A	1.100	1.090
C2	H2B	1.100	1.090
C12	H12	1.100	1.090
C13	H13	1.100	1.090
C13	H13A	1.100	1.090
C13	H13B	1.100	1.090
C15	H15	1.080	1.079
C17	H17	1.080	1.080
C26	H26	1.100	1.090
C26	H26A	1.100	1.090
C26	H26B	1.100	1.090
C21	H21	1.080	1.081
C22	H22	1.080	1.079
C23	H23	1.079	1.079
C27	H27	1.100	1.090
C27	H27A	1.100	1.090
C27	H27B	1.100	1.089
C19	H19	1.080	1.079
C8	H8	1.100	1.091
C8	H8A	1.100	1.090
C8	H8B	1.101	1.090
N7	HN7	1.000	0.970
N7	HN7A	1.000	0.970
N9	HN9	1.000	0.969
N9	HN9A	1.000	0.970

Bond Angles for 53V

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	N2	117.9	118.9
C6	C1	N9	121.3	120.6
C1	C6	C10	121.1	120.9
C1	C6	C5	120.1	118.2
N2	C1	N9	120.8	120.6
C1	N2	C3	120.8	120.8
C1	N9	HN9	109.5	120.0
C1	N9	HN9A	109.4	120.0
C2	O17	C16	116.0	117.0
O17	C2	H2	109.5	109.4
O17	C2	H2A	109.5	109.5
O17	C2	H2B	109.4	109.5
N4	C3	N7	117.6	119.1
N4	C3	N2	121.9	121.9
C3	N4	C5	122.1	121.1
N7	C3	N2	120.5	119.0
C3	N7	HN7	109.5	120.0
C3	N7	HN7A	109.4	120.0
C10	C6	C5	118.8	120.9
C6	C10	C11	179.6	180.0
C6	C5	C8	123.9	120.5
C6	C5	N4	117.1	119.1
C13	C12	C14	115.2	109.5
C13	C12	C11	115.9	109.5
C13	C12	H12	102.3	109.5
C12	C13	H13	109.5	109.5
C12	C13	H13A	109.4	109.5
C12	C13	H13B	109.5	109.5
C14	C12	C11	115.3	109.4
C12	C14	C15	107.5	119.9
C12	C14	C19	129.5	119.9
C14	C12	H12	103.1	109.5
C12	C11	C10	173.6	180.0
C11	C12	H12	102.0	109.5
C15	C14	C19	123.0	120.2
C14	C15	C16	121.5	120.1
C14	C15	H15	119.3	120.0
C14	C19	C18	116.7	119.9
C14	C19	H19	121.6	120.0
C15	C16	C17	116.5	120.0
C15	C16	O17	119.4	120.0
C16	C15	H15	119.3	119.9
C17	C16	O17	124.0	120.0
C16	C17	C18	123.1	119.8
C16	C17	H17	118.4	120.1
C17	C18	C25	115.1	120.1
C17	C18	C19	119.2	119.8
C18	C17	H17	118.4	120.1
C25	C18	C19	125.7	120.1
C18	C25	C20	118.0	120.2
C18	C25	C24	125.3	120.1
C18	C19	H19	121.6	120.0
C26	C20	C21	116.7	120.1
C26	C20	C25	121.3	120.0
C20	C26	H26	109.5	109.5
C20	C26	H26A	109.5	109.5
C20	C26	H26B	109.4	109.5
C21	C20	C25	121.9	119.9
C20	C21	C22	121.3	120.2
C20	C21	H21	119.3	119.9
C20	C25	C24	116.7	119.7
C21	C22	C23	117.4	120.2
C22	C21	H21	119.3	119.9
C21	C22	H22	121.3	119.9
C22	C23	C24	122.3	120.2
C23	C22	H22	121.3	119.9
C22	C23	H23	118.9	119.9
C23	C24	C27	115.4	120.1
C23	C24	C25	120.4	119.9
C24	C23	H23	118.8	120.0
C27	C24	C25	124.2	120.0
C24	C27	H27	109.5	109.4
C24	C27	H27A	109.5	109.5
C24	C27	H27B	109.5	109.5
C8	C5	N4	119.0	120.4
C5	C8	H8	109.5	109.5
C5	C8	H8A	109.5	109.5
C5	C8	H8B	109.5	109.5
H2	C2	H2A	109.5	109.5
H2	C2	H2B	109.5	109.5
H2A	C2	H2B	109.5	109.5
H13	C13	H13A	109.5	109.4
H13	C13	H13B	109.5	109.5
H13A	C13	H13B	109.5	109.5
H26	C26	H26A	109.5	109.5
H26	C26	H26B	109.4	109.4
H26A	C26	H26B	109.5	109.5
H27	C27	H27A	109.4	109.5
H27	C27	H27B	109.4	109.5
H27A	C27	H27B	109.5	109.5
H8	C8	H8A	109.4	109.5
H8	C8	H8B	109.4	109.4
H8A	C8	H8B	109.5	109.5
HN7	N7	HN7A	109.5	120.0
HN9	N9	HN9A	109.5	120.0

Torsion Angles for 53V

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N2	C1	C6	N9	179.8	180.2
C6	C1	N2	C3	1.9	0.0
C6	C1	N9	HN9	325.7	359.9
C6	C1	N9	HN9A	85.7	180.0
C10	C6	C1	C5	178.1	180.0
C1	C6	C10	C11	22.4	346.8
C1	C6	C5	C8	179.0	180.1
C1	C6	C5	N4	359.0	0.0
C6	C1	N2	N9	180.2	179.8
N2	C1	C6	C10	177.8	180.0
N2	C1	C6	C5	359.7	360.0
N2	C1	N9	HN9	145.8	179.7
N2	C1	N9	HN9A	265.8	359.8
N4	C3	N2	C1	357.7	0.0
N7	C3	N2	C1	179.2	180.0
C6	C1	N9	N2	179.8	180.2
N9	C1	C6	C10	358.0	359.8
N9	C1	C6	C5	179.9	179.8
N9	C1	N2	C3	181.7	180.2
HN9	N9	C1	HN9A	240.0	179.9
C15	C16	O17	C2	30.7	180.0
C17	C16	O17	C2	210.6	359.9
H2	C2	O17	H2A	240.0	240.0
H2	C2	O17	H2B	120.0	120.0
H2A	C2	O17	H2B	240.0	240.0
C1	N2	C3	N4	357.7	0.0
N7	C3	N4	N2	178.6	180.0
N4	C3	N7	HN7	194.5	0.0
N4	C3	N7	HN7A	314.6	180.0
C6	C5	N4	C3	0.7	360.0
C8	C5	N4	C3	180.7	180.0
C1	N2	C3	N7	179.2	180.0
N4	C3	N7	N2	181.4	180.0
N7	C3	N4	C5	179.5	180.0
HN7	N7	C3	HN7A	240.0	180.0
C3	N2	C1	N9	181.7	180.2
N4	C3	N2	N7	178.5	180.0
N2	C3	N4	C5	0.9	360.0
N2	C3	N7	HN7	13.1	180.0
N2	C3	N7	HN7A	133.2	0.0
C10	C6	C1	N2	177.8	180.0
C10	C6	C1	N9	358.0	359.8
C1	C6	C10	C5	181.9	179.9
C10	C6	C5	C8	0.9	0.0
C10	C6	C5	N4	180.9	180.0
C12	C11	C10	C6	4.3	336.3
C5	C6	C1	N2	359.7	360.0
C5	C6	C1	N9	179.9	179.8
C1	C6	C5	C10	178.1	180.0
C3	N4	C5	C6	0.7	360.0
C5	C6	C10	C11	200.5	166.9
C8	C5	C6	N4	180.0	180.0
C6	C5	C8	H8	124.6	90.0
C6	C5	C8	H8A	244.6	210.0
C6	C5	C8	H8B	4.6	330.0
C14	C12	C13	C11	138.9	120.0
C13	C12	C14	C15	101.0	300.0
C13	C12	C14	C19	281.2	119.7
C14	C12	C13	H12	249.0	240.0
C13	C12	C11	C10	291.1	336.9
C11	C12	C13	H12	110.1	120.0
H13	C13	C12	H13A	240.0	240.0
H13	C13	C12	H13B	120.0	120.0
H13A	C13	C12	H13B	240.0	240.0
C13	C12	C14	C11	220.9	240.0
C13	C12	C14	H12	110.6	120.0
C14	C12	C13	H13	26.9	180.0
C14	C12	C13	H13A	146.9	300.0
C14	C12	C13	H13B	266.9	60.0
C14	C12	C11	C10	152.3	216.8
C11	C12	C14	H12	249.7	240.0
C15	C14	C12	C19	179.7	180.3
C12	C14	C15	C16	180.8	179.9
C12	C14	C15	H15	0.8	359.9
C12	C14	C19	C18	179.2	179.7
C12	C14	C19	H19	359.2	0.1
C6	C10	C11	C12	4.3	336.3
C13	C12	C11	C14	138.8	120.0
C13	C12	C11	H12	249.7	240.0
C11	C12	C13	H13	248.0	60.0
C11	C12	C13	H13A	8.0	180.0
C11	C12	C13	H13B	128.0	300.0
C11	C12	C14	C15	240.1	60.0
C11	C12	C14	C19	60.4	239.7
C14	C12	C11	H12	110.9	120.0
C15	C14	C12	C11	240.1	60.0
C12	C14	C15	C19	180.2	179.7
C15	C14	C12	H12	350.4	180.0
C15	C14	C19	C18	359.5	359.4
C15	C14	C19	H19	179.5	179.8
C14	C15	C16	C17	0.0	0.0
C14	C15	C16	O17	179.9	180.0
C16	C15	C14	H15	180.0	180.0
C19	C14	C12	C11	60.4	239.7
C12	C14	C19	C15	179.7	180.3
C19	C14	C12	H12	170.7	359.7
C19	C14	C15	C16	0.6	0.3
C19	C14	C15	H15	180.6	180.3
C17	C18	C19	C14	359.9	0.6
C25	C18	C19	C14	180.3	180.3
C18	C19	C14	H19	180.0	179.6
C2	O17	C16	C15	30.7	180.0
C16	C15	C14	C19	0.6	0.3
C14	C15	C16	H15	180.0	180.0
C17	C16	C15	O17	180.1	180.1
C15	C16	C17	C18	359.3	359.9
C15	C16	C17	H17	179.2	180.0
C2	O17	C16	C17	210.6	359.9
C15	C16	C17	O17	179.9	179.9
C17	C16	C15	H15	180.0	180.1
C16	C17	C18	C25	180.4	180.1
C16	C17	C18	C19	0.8	359.7
C18	C17	C16	H17	180.0	180.0
C16	O17	C2	H2	285.9	180.0
C16	O17	C2	H2A	45.9	300.0
C16	O17	C2	H2B	166.0	60.0
C15	C16	O17	C17	180.1	180.1
O17	C16	C15	H15	359.9	360.0
O17	C16	C17	C18	179.4	180.0
O17	C16	C17	H17	359.4	0.0
C14	C19	C18	C17	359.9	0.6
C18	C17	C16	O17	179.4	180.0
C16	C17	C18	H17	180.0	180.0
C25	C18	C17	C19	179.6	180.3
C17	C18	C25	C20	38.1	65.0
C17	C18	C25	C24	221.3	245.2
C17	C18	C19	H19	179.8	180.2
C14	C19	C18	C25	180.3	180.3
C17	C18	C25	C19	180.4	179.7
C25	C18	C17	H17	0.4	0.0
C25	C18	C19	H19	0.3	359.9
C26	C20	C25	C18	0.3	0.0
C21	C20	C25	C18	182.1	179.7
C20	C25	C18	C24	176.9	179.7
C23	C24	C25	C18	178.1	180.3
C27	C24	C25	C18	356.1	0.0
C14	C19	C18	H19	180.0	180.4
C17	C18	C19	C25	179.5	180.3
C19	C18	C17	H17	180.8	179.7
C19	C18	C25	C20	217.7	245.3
C19	C18	C25	C24	40.8	65.6
C18	C25	C20	C26	0.3	0.0
C21	C20	C26	C25	178.3	180.3
C26	C20	C21	C22	181.9	180.0
C26	C20	C21	H21	1.8	360.0
C26	C20	C25	C24	177.4	179.7
H26	C26	C20	H26A	240.0	240.0
H26	C26	C20	H26B	120.0	120.0
H26A	C26	C20	H26B	240.0	240.0
C18	C25	C20	C21	182.1	179.7
C26	C20	C21	C25	181.7	179.7
C21	C20	C26	H26	177.8	90.0
C21	C20	C26	H26A	297.8	210.0
C21	C20	C26	H26B	57.8	330.0
C21	C20	C25	C24	359.2	359.4
C20	C21	C22	C23	0.0	360.0
C22	C21	C20	H21	180.0	180.0
C20	C21	C22	H22	180.0	180.0
C20	C25	C18	C19	217.7	245.3
C18	C25	C20	C24	182.9	180.3
C26	C20	C25	C21	178.2	180.3
C25	C20	C26	H26	359.5	269.7
C25	C20	C26	H26A	119.5	29.7
C25	C20	C26	H26B	239.5	149.7
C25	C20	C21	C22	0.2	0.3
C25	C20	C21	H21	180.1	180.3
C23	C24	C25	C20	1.2	0.5
C27	C24	C25	C20	179.2	180.3
C22	C21	C20	C25	0.2	0.3
C20	C21	C22	H21	180.0	180.0
C21	C22	C23	C24	0.4	360.0
C23	C22	C21	H22	180.0	180.0
C21	C22	C23	H23	180.4	180.0
C23	C22	C21	H21	180.1	180.0
C21	C22	C23	H22	180.0	180.0
C22	C23	C24	C27	180.8	180.0
C22	C23	C24	C25	358.9	359.8
C24	C23	C22	H23	180.0	180.0
C18	C25	C24	C23	178.1	180.3
C20	C25	C24	C23	1.2	0.5
C24	C23	C22	H22	180.4	180.0
C22	C23	C24	H23	180.0	180.0
C27	C24	C23	C25	181.9	180.2
C23	C24	C27	H27	240.8	90.0
C23	C24	C27	H27A	0.8	209.9
C23	C24	C27	H27B	120.8	330.0
C18	C25	C24	C27	356.1	0.0
C20	C25	C24	C27	179.2	180.3
C23	C24	C27	C25	178.1	179.8
C27	C24	C23	H23	0.8	0.0
H27	C27	C24	H27A	240.0	240.0
H27	C27	C24	H27B	120.0	120.0
H27A	C27	C24	H27B	240.0	240.0
C24	C25	C18	C19	40.8	65.6
C18	C25	C24	C20	176.9	179.7
C23	C24	C25	C27	182.0	180.2
C25	C24	C23	H23	179.0	179.8
C25	C24	C27	H27	62.7	270.2
C25	C24	C27	H27A	182.7	30.2
C25	C24	C27	H27B	302.7	150.2
C11	C10	C6	C5	200.5	166.9
C10	C11	C12	H12	41.4	96.9
C3	N4	C5	C8	180.7	180.0
C6	C5	C8	N4	180.0	180.0
H8	C8	C5	H8A	240.0	240.0
H8	C8	C5	H8B	120.0	120.0
H8A	C8	C5	H8B	240.0	240.0
C5	N4	C3	N7	179.5	180.0
C5	N4	C3	N2	0.9	360.0
C6	C5	N4	C8	180.0	180.0
N4	C5	C8	H8	304.6	270.0
N4	C5	C8	H8A	64.6	30.0
N4	C5	C8	H8B	184.6	150.0
H2	C2	O17	C16	285.9	180.0
O17	C2	H2	H2A	120.0	120.0
O17	C2	H2	H2B	240.0	240.0
H2A	C2	H2	H2B	120.0	120.0
H2A	C2	O17	C16	45.9	300.0
O17	C2	H2A	H2	240.0	240.1
O17	C2	H2A	H2B	120.0	120.0
H2	C2	H2A	H2B	240.0	239.9
H2B	C2	O17	C16	166.0	60.0
O17	C2	H2B	H2	120.0	119.9
O17	C2	H2B	H2A	240.0	240.0
H2	C2	H2B	H2A	120.0	120.1
C13	C12	H12	C14	240.2	240.0
C13	C12	H12	C11	120.2	120.0
H12	C12	C13	H13	137.9	300.0
H12	C12	C13	H13A	257.9	60.0
H12	C12	C13	H13B	17.9	180.0
C14	C12	H12	C11	240.1	240.0
H12	C12	C14	C15	350.4	180.0
H12	C12	C14	C19	170.7	359.7
H12	C12	C11	C10	41.4	96.9
H13	C13	C12	C14	26.9	180.0
H13	C13	C12	C11	248.0	60.0
H13	C13	C12	H12	137.9	300.0
C12	C13	H13	H13A	120.0	120.0
C12	C13	H13	H13B	240.0	240.0
H13A	C13	H13	H13B	120.0	120.0
H13A	C13	C12	C14	146.9	300.0
H13A	C13	C12	C11	8.0	180.0
H13A	C13	C12	H12	257.9	60.0
C12	C13	H13A	H13	240.0	240.0
C12	C13	H13A	H13B	120.0	120.0
H13	C13	H13A	H13B	240.0	240.0
H13B	C13	C12	C14	266.9	60.0
H13B	C13	C12	C11	128.0	300.0
H13B	C13	C12	H12	17.9	180.0
C12	C13	H13B	H13	120.0	120.0
C12	C13	H13B	H13A	240.0	240.0
H13	C13	H13B	H13A	120.0	120.0
H15	C15	C14	C19	180.6	180.3
C14	C15	H15	C16	180.0	180.0
H15	C15	C16	C17	180.0	180.1
H15	C15	C16	O17	359.9	360.0
H17	C17	C16	O17	359.4	0.0
C16	C17	H17	C18	180.0	180.0
H17	C17	C18	C25	0.4	0.0
H17	C17	C18	C19	180.8	179.7
H26	C26	C20	C21	177.8	90.0
H26	C26	C20	C25	359.5	269.7
C20	C26	H26	H26A	120.0	120.0
C20	C26	H26	H26B	240.0	240.0
H26A	C26	H26	H26B	120.0	120.0
H26A	C26	C20	C21	297.8	210.0
H26A	C26	C20	C25	119.5	29.7
C20	C26	H26A	H26	239.9	240.0
C20	C26	H26A	H26B	120.0	120.0
H26	C26	H26A	H26B	240.0	240.1
H26B	C26	C20	C21	57.8	330.0
H26B	C26	C20	C25	239.5	149.7
C20	C26	H26B	H26	120.0	120.0
C20	C26	H26B	H26A	240.0	240.0
H26	C26	H26B	H26A	120.0	120.0
H21	C21	C20	C25	180.1	180.3
C20	C21	H21	C22	180.0	180.0
H21	C21	C22	C23	180.1	180.0
H21	C21	C22	H22	0.1	360.0
C21	C22	H22	C23	180.0	180.0
H22	C22	C21	H21	0.1	360.0
H22	C22	C23	C24	180.4	180.0
H22	C22	C23	H23	0.4	360.0
C22	C23	H23	C24	180.0	180.0
H23	C23	C22	H22	0.4	360.0
H23	C23	C24	C27	0.8	0.0
H23	C23	C24	C25	179.0	179.8
H27	C27	C24	C25	62.7	270.2
C24	C27	H27	H27A	120.0	120.0
C24	C27	H27	H27B	240.0	240.0
H27A	C27	H27	H27B	120.0	120.0
H27A	C27	C24	C25	182.7	30.2
C24	C27	H27A	H27	240.0	240.1
C24	C27	H27A	H27B	120.0	120.0
H27	C27	H27A	H27B	240.1	240.0
H27B	C27	C24	C25	302.7	150.2
C24	C27	H27B	H27	120.0	120.0
C24	C27	H27B	H27A	240.0	240.0
H27	C27	H27B	H27A	120.0	120.0
C14	C19	H19	C18	180.0	179.6
H8	C8	C5	N4	304.6	270.0
C5	C8	H8	H8A	120.0	120.1
C5	C8	H8	H8B	240.0	240.0
H8A	C8	H8	H8B	120.0	120.0
H8A	C8	C5	N4	64.6	30.0
C5	C8	H8A	H8	240.0	239.9
C5	C8	H8A	H8B	120.0	120.0
H8	C8	H8A	H8B	240.1	240.1
H8B	C8	C5	N4	184.6	150.0
C5	C8	H8B	H8	120.1	120.0
C5	C8	H8B	H8A	240.0	240.0
H8	C8	H8B	H8A	119.9	120.0
HN7	N7	C3	N2	13.1	180.0
C3	N7	HN7	HN7A	120.0	180.0
HN7A	N7	C3	N2	133.2	0.0
C3	N7	HN7A	HN7	240.0	180.0
C1	N9	HN9	HN9A	120.0	180.1
C1	N9	HN9A	HN9	240.0	179.9